Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:90909312-91964889

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42530 5 90922732 to 90924902 2170 + lincRNA gene predicted gene 42530
Tssr47253 5 90930739 to 90930792 53 + TSS region transcription start site region 47253
Tssr47254 5 90930822 to 90930833 11 + TSS region transcription start site region 47254
Cpgi16044 5 90930920 to 90931845 925 CpG island CpG island 16044
Tssr47255 5 90931089 to 90931112 23 + TSS region transcription start site region 47255
Mthfd2l 5 90931196 to 91021368 90172 + protein coding gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
Tssr47256 5 90931209 to 90931311 102 + TSS region transcription start site region 47256
Tssr51817 5 90932952 to 90932958 6 - TSS region transcription start site region 51817
E330024J20Rik 5 90934163 to 90937691 3528 unclassified gene RIKEN cDNA E330024J20 gene
Tssr47257 5 90935087 to 90935105 18 + TSS region transcription start site region 47257
Tssr51818 5 91014498 to 91014504 6 - TSS region transcription start site region 51818
Tssr47258 5 91027457 to 91027492 35 + TSS region transcription start site region 47258
Epgn 5 91027517 to 91035212 7695 + protein coding gene epithelial mitogen
Gm19610 5 91051871 to 91074773 22902 - antisense lncRNA gene predicted gene, 19610
D5Ertd566e 5 91070553 to 91070787 234 DNA segment DNA segment, Chr 5, ERATO Doi 566, expressed
Tssr47259 5 91074297 to 91074308 11 + TSS region transcription start site region 47259
Cpgi16045 5 91074484 to 91075021 537 CpG island CpG island 16045
Tssr47260 5 91074611 to 91074629 18 + TSS region transcription start site region 47260
Ereg 5 91074622 to 91093646 19024 + protein coding gene epiregulin
Tssr47261 5 91138043 to 91138045 2 + TSS region transcription start site region 47261
Cpgi16046 5 91139380 to 91140026 646 CpG island CpG island 16046
Tssr47262 5 91139591 to 91139607 16 + TSS region transcription start site region 47262
Areg 5 91139599 to 91148432 8833 + protein coding gene amphiregulin
Tssr47263 5 91141052 to 91141058 6 + TSS region transcription start site region 47263
5033428C03Rik 5 91209381 to 91210842 1461 unclassified gene RIKEN cDNA 5033428C03 gene
Gm23092 5 91217898 to 91218004 106 - snRNA gene predicted gene, 23092
Gm19619 5 91257571 to 91283076 25505 - lincRNA gene predicted gene, 19619
D5Mit360 5 91279093 to 91279198 105 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 360
Tssr51819 5 91283045 to 91283057 12 - TSS region transcription start site region 51819
Cpgi16047 5 91302019 to 91302240 221 CpG island CpG island 16047
Btc 5 91357261 to 91402994 45733 - protein coding gene betacellulin, epidermal growth factor family member
D5Mit6 5 91374504 to 91374638 134 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 6
Tssr51820 5 91402844 to 91402851 7 - TSS region transcription start site region 51820
Tssr51821 5 91402880 to 91402885 5 - TSS region transcription start site region 51821
Tssr51822 5 91402905 to 91402922 17 - TSS region transcription start site region 51822
Tssr51823 5 91403002 to 91403024 22 - TSS region transcription start site region 51823
Gm42110 5 91424312 to 91449889 25577 - lncRNA gene predicted gene, 42110
Tssr47264 5 91450031 to 91450040 9 + TSS region transcription start site region 47264
Cpgi16048 5 91517431 to 91518249 818 CpG island CpG island 16048
Tssr47265 5 91517678 to 91517694 16 + TSS region transcription start site region 47265
Parm1 5 91517700 to 91624011 106311 + protein coding gene prostate androgen-regulated mucin-like protein 1
Tssr47266 5 91517701 to 91517719 18 + TSS region transcription start site region 47266
Tssr47267 5 91517732 to 91517749 17 + TSS region transcription start site region 47267
Tssr47268 5 91517751 to 91517762 11 + TSS region transcription start site region 47268
Gm36222 5 91708461 to 91733365 24904 + lncRNA gene predicted gene, 36222
Trmt112-ps1 5 91737705 to 91738079 374 - pseudogene tRNA methyltransferase 11-2, pseudogene 1
Gm7832 5 91760696 to 91761575 879 - pseudogene predicted gene 7832
Tssr51824 5 91761609 to 91761647 38 - TSS region transcription start site region 51824
Tssr51825 5 91761680 to 91761686 6 - TSS region transcription start site region 51825
Gm28271 5 91763325 to 91767914 4589 - lincRNA gene predicted gene 28271
1700063O14Rik 5 91766242 to 91767300 1058 - lincRNA gene RIKEN cDNA 1700063O14 gene
Tssr1546 5 91770186 to 91770190 4 + TSS region transcription start site region 1546
Gm19649 5 91786061 to 91786882 821 - pseudogene predicted gene, 19649
Gm43596 5 91788598 to 91789481 883 + pseudogene predicted gene 43596
Gm5558 5 91806579 to 91807073 494 - pseudogene predicted gene 5558
Tssr51826 5 91807118 to 91807129 11 - TSS region transcription start site region 51826
Gm36303 5 91831379 to 91850950 19571 - lncRNA gene predicted gene, 36303
Gm36357 5 91861741 to 91909746 48005 + lncRNA gene predicted gene, 36357
4930570G05Rik 5 91911399 to 91913402 2003 lncRNA gene RIKEN cDNA 4930570G05 gene
Gm43688 5 91911400 to 91913403 2003 - lincRNA gene predicted gene 43688
Rchy1 5 91948904 to 91963068 14164 - protein coding gene ring finger and CHY zinc finger domain containing 1
Tssr51827 5 91949613 to 91949624 11 - TSS region transcription start site region 51827
Gm43039 5 91958000 to 91958962 962 - unclassified gene predicted gene 43039
Tssr51828 5 91961447 to 91961462 15 - TSS region transcription start site region 51828
Tssr51829 5 91961607 to 91961612 5 - TSS region transcription start site region 51829
Tssr51830 5 91962282 to 91962293 11 - TSS region transcription start site region 51830
Tssr51831 5 91962315 to 91962324 9 - TSS region transcription start site region 51831
Tssr47269 5 91962425 to 91962428 3 + TSS region transcription start site region 47269
Cpgi16049 5 91962430 to 91963401 971 CpG island CpG island 16049
Tssr47270 5 91962440 to 91962445 5 + TSS region transcription start site region 47270
Tssr47271 5 91962466 to 91962473 7 + TSS region transcription start site region 47271
Tssr51832 5 91962715 to 91962740 25 - TSS region transcription start site region 51832
Tssr51833 5 91962839 to 91962887 48 - TSS region transcription start site region 51833
Tssr47272 5 91962875 to 91962910 35 + TSS region transcription start site region 47272
Thap6 5 91962882 to 91972137 9255 + pseudogene THAP domain containing 6
Tssr47273 5 91962922 to 91962942 20 + TSS region transcription start site region 47273
Tssr47274 5 91962944 to 91962958 14 + TSS region transcription start site region 47274
Tssr51834 5 91963080 to 91963105 25 - TSS region transcription start site region 51834
Tssr51835 5 91963106 to 91963137 31 - TSS region transcription start site region 51835
Tssr47275 5 91963317 to 91963327 10 + TSS region transcription start site region 47275
Tssr47276 5 91963347 to 91963359 12 + TSS region transcription start site region 47276