Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:90539672-90739683

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Afm 5 90518949 to 90553544 34595 + protein coding gene afamin
Tssr47164 5 90546288 to 90546289 1 + TSS region transcription start site region 47164
Gm2602 5 90558849 to 90559419 570 + pseudogene predicted gene 2602
Tssr47165 5 90561064 to 90561078 14 + TSS region transcription start site region 47165
Tssr47166 5 90561102 to 90561111 9 + TSS region transcription start site region 47166
5830473C10Rik 5 90561107 to 90597871 36764 + protein coding gene RIKEN cDNA 5830473C10 gene
Gm42109 5 90574145 to 90584972 10827 - lncRNA gene predicted gene, 42109
Tssr47167 5 90583251 to 90583255 4 + TSS region transcription start site region 47167
Cpgi16039 5 90588846 to 90589132 286 CpG island CpG island 16039
Rassf6 5 90603076 to 90640657 37581 - protein coding gene Ras association (RalGDS/AF-6) domain family member 6
Tssr51790 5 90639648 to 90639662 14 - TSS region transcription start site region 51790
Tssr51791 5 90639672 to 90639683 11 - TSS region transcription start site region 51791
Cpgi16040 5 90640188 to 90640658 470 CpG island CpG island 16040
Tssr51792 5 90640417 to 90640425 8 - TSS region transcription start site region 51792
Tssr51793 5 90640464 to 90640539 75 - TSS region transcription start site region 51793
Tssr51794 5 90640602 to 90640695 93 - TSS region transcription start site region 51794
Tssr51795 5 90654424 to 90654437 13 - TSS region transcription start site region 51795
Cpgi16041 5 90658340 to 90658521 181 CpG island CpG island 16041
Tssr1543 5 90690120 to 90690122 2 + TSS region transcription start site region 1543
Tssr51796 5 90694565 to 90694569 4 - TSS region transcription start site region 51796
Tssr51797 5 90696091 to 90696094 3 - TSS region transcription start site region 51797
Tssr51798 5 90696102 to 90696116 14 - TSS region transcription start site region 51798
Tssr51799 5 90696117 to 90696139 22 - TSS region transcription start site region 51799
Tssr1544 5 90696314 to 90696337 23 + TSS region transcription start site region 1544
Tssr51800 5 90700205 to 90700210 5 - TSS region transcription start site region 51800
Tssr47168 5 90703210 to 90703228 18 + TSS region transcription start site region 47168
Gm36084 5 90714987 to 90729296 14309 + lncRNA gene predicted gene, 36084
Tssr47169 5 90719116 to 90719162 46 + TSS region transcription start site region 47169
Tssr47170 5 90719167 to 90719204 37 + TSS region transcription start site region 47170
Tssr47171 5 90719218 to 90719225 7 + TSS region transcription start site region 47171
Tssr47172 5 90722374 to 90722380 6 + TSS region transcription start site region 47172
Tssr47173 5 90723468 to 90723486 18 + TSS region transcription start site region 47173
Tssr47174 5 90723506 to 90723519 13 + TSS region transcription start site region 47174
Tssr47175 5 90723566 to 90723585 19 + TSS region transcription start site region 47175
Tssr47176 5 90739201 to 90739214 13 + TSS region transcription start site region 47176