Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:90506064-90616078

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Afp 5 90490737 to 90508907 18170 + protein coding gene alpha fetoprotein
Gm43449 5 90499088 to 90515931 16843 - antisense lncRNA gene predicted gene 43449
Tssr47150 5 90506515 to 90506524 9 + TSS region transcription start site region 47150
Tssr47151 5 90506528 to 90506539 11 + TSS region transcription start site region 47151
Tssr47152 5 90506549 to 90506563 14 + TSS region transcription start site region 47152
Tssr51787 5 90506557 to 90506589 32 - TSS region transcription start site region 51787
Tssr47153 5 90506594 to 90506599 5 + TSS region transcription start site region 47153
Tssr51788 5 90506599 to 90506607 8 - TSS region transcription start site region 51788
Tssr47154 5 90506600 to 90506604 4 + TSS region transcription start site region 47154
Tssr47155 5 90506639 to 90506665 26 + TSS region transcription start site region 47155
Tssr51789 5 90506700 to 90506722 22 - TSS region transcription start site region 51789
Tssr47156 5 90507844 to 90507857 13 + TSS region transcription start site region 47156
Tssr47157 5 90507870 to 90507897 27 + TSS region transcription start site region 47157
Tssr47158 5 90508428 to 90508452 24 + TSS region transcription start site region 47158
Tssr47159 5 90508743 to 90508746 3 + TSS region transcription start site region 47159
Tssr47160 5 90508747 to 90508787 40 + TSS region transcription start site region 47160
Tssr47161 5 90508807 to 90508824 17 + TSS region transcription start site region 47161
Tssr47162 5 90518941 to 90518956 15 + TSS region transcription start site region 47162
Afm 5 90518949 to 90553544 34595 + protein coding gene afamin
Tssr47163 5 90524813 to 90524839 26 + TSS region transcription start site region 47163
Tssr47164 5 90546288 to 90546289 1 + TSS region transcription start site region 47164
Gm2602 5 90558849 to 90559419 570 + pseudogene predicted gene 2602
Tssr47165 5 90561064 to 90561078 14 + TSS region transcription start site region 47165
Tssr47166 5 90561102 to 90561111 9 + TSS region transcription start site region 47166
5830473C10Rik 5 90561107 to 90597871 36764 + protein coding gene RIKEN cDNA 5830473C10 gene
Gm42109 5 90574145 to 90584972 10827 - lncRNA gene predicted gene, 42109
Tssr47167 5 90583251 to 90583255 4 + TSS region transcription start site region 47167
Cpgi16039 5 90588846 to 90589132 286 CpG island CpG island 16039
Rassf6 5 90603076 to 90640657 37581 - protein coding gene Ras association (RalGDS/AF-6) domain family member 6