Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:90490602-90790695

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr1540 5 90490668 to 90490678 10 + TSS region transcription start site region 1540
Tssr1541 5 90490697 to 90490711 14 + TSS region transcription start site region 1541
Tssr47123 5 90490729 to 90490744 15 + TSS region transcription start site region 47123
Afp 5 90490737 to 90508907 18170 + protein coding gene alpha fetoprotein
Tssr1542 5 90490815 to 90490820 5 + TSS region transcription start site region 1542
D5Nds4 5 90490918 to 90491001 83 DNA segment DNA segment, Chr 5, Nuffield Department of Surgery 4
Tssr47124 5 90491688 to 90491719 31 + TSS region transcription start site region 47124
Tssr47125 5 90492637 to 90492683 46 + TSS region transcription start site region 47125
Tssr47126 5 90492688 to 90492718 30 + TSS region transcription start site region 47126
Tssr51780 5 90492721 to 90492739 18 - TSS region transcription start site region 51780
Tssr51781 5 90492756 to 90492765 9 - TSS region transcription start site region 51781
Tssr47127 5 90495959 to 90495965 6 + TSS region transcription start site region 47127
Tssr47128 5 90495974 to 90495986 12 + TSS region transcription start site region 47128
Tssr47129 5 90495990 to 90496029 39 + TSS region transcription start site region 47129
Tssr47130 5 90496041 to 90496123 82 + TSS region transcription start site region 47130
Tssr47131 5 90497186 to 90497206 20 + TSS region transcription start site region 47131
Tssr47132 5 90497209 to 90497245 36 + TSS region transcription start site region 47132
Tssr47133 5 90497248 to 90497267 19 + TSS region transcription start site region 47133
Tssr47134 5 90497276 to 90497297 21 + TSS region transcription start site region 47134
Tssr47135 5 90498256 to 90498315 59 + TSS region transcription start site region 47135
Tssr51782 5 90498295 to 90498312 17 - TSS region transcription start site region 51782
Tssr51783 5 90498327 to 90498367 40 - TSS region transcription start site region 51783
Gm43449 5 90499088 to 90515931 16843 - antisense lncRNA gene predicted gene 43449
Tssr47136 5 90499592 to 90499641 49 + TSS region transcription start site region 47136
Tssr47137 5 90499642 to 90499703 61 + TSS region transcription start site region 47137
Tssr47138 5 90500400 to 90500404 4 + TSS region transcription start site region 47138
Tssr47139 5 90501401 to 90501421 20 + TSS region transcription start site region 47139
Tssr47140 5 90501430 to 90501436 6 + TSS region transcription start site region 47140
Tssr47141 5 90501444 to 90501531 87 + TSS region transcription start site region 47141
Tssr51784 5 90501519 to 90501533 14 - TSS region transcription start site region 51784
Tssr47142 5 90501532 to 90501545 13 + TSS region transcription start site region 47142
Tssr47143 5 90503563 to 90503640 77 + TSS region transcription start site region 47143
Tssr47144 5 90503669 to 90503680 11 + TSS region transcription start site region 47144
Tssr47145 5 90504339 to 90504352 13 + TSS region transcription start site region 47145
Tssr47146 5 90504353 to 90504396 43 + TSS region transcription start site region 47146
Tssr51785 5 90504357 to 90504379 22 - TSS region transcription start site region 51785
Tssr47147 5 90504894 to 90504923 29 + TSS region transcription start site region 47147
Tssr47148 5 90504950 to 90504965 15 + TSS region transcription start site region 47148
Tssr47149 5 90504966 to 90505036 70 + TSS region transcription start site region 47149
Tssr51786 5 90504970 to 90504978 8 - TSS region transcription start site region 51786
Tssr47150 5 90506515 to 90506524 9 + TSS region transcription start site region 47150
Tssr47151 5 90506528 to 90506539 11 + TSS region transcription start site region 47151
Tssr47152 5 90506549 to 90506563 14 + TSS region transcription start site region 47152
Tssr51787 5 90506557 to 90506589 32 - TSS region transcription start site region 51787
Tssr47153 5 90506594 to 90506599 5 + TSS region transcription start site region 47153
Tssr51788 5 90506599 to 90506607 8 - TSS region transcription start site region 51788
Tssr47154 5 90506600 to 90506604 4 + TSS region transcription start site region 47154
Tssr47155 5 90506639 to 90506665 26 + TSS region transcription start site region 47155
Tssr51789 5 90506700 to 90506722 22 - TSS region transcription start site region 51789
Tssr47156 5 90507844 to 90507857 13 + TSS region transcription start site region 47156
Tssr47157 5 90507870 to 90507897 27 + TSS region transcription start site region 47157
Tssr47158 5 90508428 to 90508452 24 + TSS region transcription start site region 47158
Tssr47159 5 90508743 to 90508746 3 + TSS region transcription start site region 47159
Tssr47160 5 90508747 to 90508787 40 + TSS region transcription start site region 47160
Tssr47161 5 90508807 to 90508824 17 + TSS region transcription start site region 47161
Tssr47162 5 90518941 to 90518956 15 + TSS region transcription start site region 47162
Afm 5 90518949 to 90553544 34595 + protein coding gene afamin
Tssr47163 5 90524813 to 90524839 26 + TSS region transcription start site region 47163
Tssr47164 5 90546288 to 90546289 1 + TSS region transcription start site region 47164
Gm2602 5 90558849 to 90559419 570 + pseudogene predicted gene 2602
Tssr47165 5 90561064 to 90561078 14 + TSS region transcription start site region 47165
Tssr47166 5 90561102 to 90561111 9 + TSS region transcription start site region 47166
5830473C10Rik 5 90561107 to 90597871 36764 + protein coding gene RIKEN cDNA 5830473C10 gene
Gm42109 5 90574145 to 90584972 10827 - lncRNA gene predicted gene, 42109
Tssr47167 5 90583251 to 90583255 4 + TSS region transcription start site region 47167
Cpgi16039 5 90588846 to 90589132 286 CpG island CpG island 16039
Rassf6 5 90603076 to 90640657 37581 - protein coding gene Ras association (RalGDS/AF-6) domain family member 6
Tssr51790 5 90639648 to 90639662 14 - TSS region transcription start site region 51790
Tssr51791 5 90639672 to 90639683 11 - TSS region transcription start site region 51791
Cpgi16040 5 90640188 to 90640658 470 CpG island CpG island 16040
Tssr51792 5 90640417 to 90640425 8 - TSS region transcription start site region 51792
Tssr51793 5 90640464 to 90640539 75 - TSS region transcription start site region 51793
Tssr51794 5 90640602 to 90640695 93 - TSS region transcription start site region 51794
Tssr51795 5 90654424 to 90654437 13 - TSS region transcription start site region 51795
Cpgi16041 5 90658340 to 90658521 181 CpG island CpG island 16041
Tssr1543 5 90690120 to 90690122 2 + TSS region transcription start site region 1543
Tssr51796 5 90694565 to 90694569 4 - TSS region transcription start site region 51796
Tssr51797 5 90696091 to 90696094 3 - TSS region transcription start site region 51797
Tssr51798 5 90696102 to 90696116 14 - TSS region transcription start site region 51798
Tssr51799 5 90696117 to 90696139 22 - TSS region transcription start site region 51799
Tssr1544 5 90696314 to 90696337 23 + TSS region transcription start site region 1544
Tssr51800 5 90700205 to 90700210 5 - TSS region transcription start site region 51800
Tssr47168 5 90703210 to 90703228 18 + TSS region transcription start site region 47168
Gm36084 5 90714987 to 90729296 14309 + lncRNA gene predicted gene, 36084
Tssr47169 5 90719116 to 90719162 46 + TSS region transcription start site region 47169
Tssr47170 5 90719167 to 90719204 37 + TSS region transcription start site region 47170
Tssr47171 5 90719218 to 90719225 7 + TSS region transcription start site region 47171
Tssr47172 5 90722374 to 90722380 6 + TSS region transcription start site region 47172
Tssr47173 5 90723468 to 90723486 18 + TSS region transcription start site region 47173
Tssr47174 5 90723506 to 90723519 13 + TSS region transcription start site region 47174
Tssr47175 5 90723566 to 90723585 19 + TSS region transcription start site region 47175
Tssr47176 5 90739201 to 90739214 13 + TSS region transcription start site region 47176
Tssr47177 5 90744417 to 90744420 3 + TSS region transcription start site region 47177
Gm43090 5 90750525 to 90750838 313 + pseudogene predicted gene 43090
Cpgi16042 5 90759343 to 90759813 470 CpG island CpG island 16042
Tssr47178 5 90759349 to 90759367 18 + TSS region transcription start site region 47178
Cxcl5 5 90759360 to 90761624 2264 + protein coding gene chemokine (C-X-C motif) ligand 5
Tssr47179 5 90768476 to 90768496 20 + TSS region transcription start site region 47179
Tssr47180 5 90768511 to 90768526 15 + TSS region transcription start site region 47180
Ppbp 5 90768518 to 90770063 1545 + protein coding gene pro-platelet basic protein
Tssr1545 5 90768533 to 90768544 11 + TSS region transcription start site region 1545
Tssr47181 5 90768633 to 90768646 13 + TSS region transcription start site region 47181
Tssr47182 5 90768680 to 90768687 7 + TSS region transcription start site region 47182
Tssr47183 5 90769451 to 90769464 13 + TSS region transcription start site region 47183
Tssr47184 5 90769594 to 90769606 12 + TSS region transcription start site region 47184
Tssr47185 5 90769693 to 90769704 11 + TSS region transcription start site region 47185
Tssr47186 5 90769850 to 90769859 9 + TSS region transcription start site region 47186
Tssr51801 5 90770058 to 90770062 4 - TSS region transcription start site region 51801
Tssr47187 5 90771625 to 90771630 5 + TSS region transcription start site region 47187
Tssr47188 5 90772060 to 90772071 11 + TSS region transcription start site region 47188
Pf4 5 90772435 to 90773383 948 + protein coding gene platelet factor 4
Tssr47189 5 90772469 to 90772480 11 + TSS region transcription start site region 47189
Tssr47190 5 90772493 to 90772509 16 + TSS region transcription start site region 47190
Tssr47191 5 90772537 to 90772551 14 + TSS region transcription start site region 47191
Tssr47192 5 90773187 to 90773200 13 + TSS region transcription start site region 47192
Tssr47193 5 90786100 to 90786105 5 + TSS region transcription start site region 47193
Cxcl3 5 90786101 to 90788093 1992 + protein coding gene chemokine (C-X-C motif) ligand 3
Tssr47194 5 90786332 to 90786361 29 + TSS region transcription start site region 47194
Tssr47195 5 90786363 to 90786384 21 + TSS region transcription start site region 47195
Tssr47196 5 90786390 to 90786410 20 + TSS region transcription start site region 47196
Tssr47197 5 90786412 to 90786441 29 + TSS region transcription start site region 47197
Tssr51802 5 90786432 to 90786467 35 - TSS region transcription start site region 51802
Tssr47198 5 90786504 to 90786515 11 + TSS region transcription start site region 47198
Tssr47199 5 90786576 to 90786587 11 + TSS region transcription start site region 47199
Tssr47200 5 90786597 to 90786635 38 + TSS region transcription start site region 47200
Tssr51803 5 90786602 to 90786631 29 - TSS region transcription start site region 51803
Tssr51804 5 90786656 to 90786673 17 - TSS region transcription start site region 51804
Tssr47201 5 90786666 to 90786680 14 + TSS region transcription start site region 47201
Tssr47202 5 90787424 to 90787440 16 + TSS region transcription start site region 47202
Tssr47203 5 90787449 to 90787489 40 + TSS region transcription start site region 47203
Tssr47204 5 90787502 to 90787563 61 + TSS region transcription start site region 47204
Tssr47205 5 90787569 to 90787579 10 + TSS region transcription start site region 47205
Tssr47206 5 90787604 to 90787633 29 + TSS region transcription start site region 47206
Tssr47207 5 90787743 to 90787768 25 + TSS region transcription start site region 47207
Tssr51805 5 90789796 to 90789829 33 - TSS region transcription start site region 51805