Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:89850427-90460536

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Adamts3 5 89677087 to 89883334 206247 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3
Cpgi16036 5 89882218 to 89883935 1717 CpG island CpG island 16036
Tssr51727 5 89883297 to 89883309 12 - TSS region transcription start site region 51727
Tssr51728 5 89883321 to 89883343 22 - TSS region transcription start site region 51728
Tssr51729 5 89883345 to 89883378 33 - TSS region transcription start site region 51729
Tssr51730 5 89883465 to 89883512 47 - TSS region transcription start site region 51730
Eif5al3-ps 5 90132229 to 90132675 446 + pseudogene eukaryotic translation initiation factor 5A-like 3, pseudogene
D5Mit361 5 90155427 to 90155536 109 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 361
Gm35936 5 90193305 to 90200360 7055 + lncRNA gene predicted gene, 35936
Cox18 5 90214724 to 90223996 9272 - protein coding gene cytochrome c oxidase assembly protein 18
Cpgi16037 5 90223453 to 90224310 857 CpG island CpG island 16037
Tssr51731 5 90223923 to 90224020 97 - TSS region transcription start site region 51731
Ankrd17 5 90227166 to 90366572 139406 - protein coding gene ankyrin repeat domain 17
Tssr51732 5 90228979 to 90228998 19 - TSS region transcription start site region 51732
Tssr51733 5 90243779 to 90243825 46 - TSS region transcription start site region 51733
Tssr51734 5 90243850 to 90243861 11 - TSS region transcription start site region 51734
Tssr51735 5 90243979 to 90244051 72 - TSS region transcription start site region 51735
Tssr51736 5 90244354 to 90244366 12 - TSS region transcription start site region 51736
Tssr47071 5 90246799 to 90246823 24 + TSS region transcription start site region 47071
Tssr47072 5 90247269 to 90247274 5 + TSS region transcription start site region 47072
D5Ertd236e 5 90252136 to 90252377 241 DNA segment DNA segment, Chr 5, ERATO Doi 236, expressed
Tssr51737 5 90254770 to 90254812 42 - TSS region transcription start site region 51737
Tssr51738 5 90260154 to 90260183 29 - TSS region transcription start site region 51738
Tssr51739 5 90263336 to 90263369 33 - TSS region transcription start site region 51739
Tssr51740 5 90263381 to 90263395 14 - TSS region transcription start site region 51740
D5Wsu152e 5 90314711 to 90314959 248 DNA segment DNA segment, Chr 5, Wayne State University 152, expressed
AU017193 5 90327599 to 90331506 3907 unclassified gene expressed sequence AU017193
Tssr51741 5 90337688 to 90337693 5 - TSS region transcription start site region 51741
Tssr51742 5 90339724 to 90339802 78 - TSS region transcription start site region 51742
Cpgi16038 5 90365183 to 90367058 1875 CpG island CpG island 16038
Tssr51743 5 90365230 to 90365253 23 - TSS region transcription start site region 51743
Tssr47073 5 90365383 to 90365419 36 + TSS region transcription start site region 47073
Tssr51744 5 90366176 to 90366192 16 - TSS region transcription start site region 51744
Tssr51745 5 90366212 to 90366224 12 - TSS region transcription start site region 51745
Tssr51746 5 90366504 to 90366609 105 - TSS region transcription start site region 51746
Tssr47074 5 90366616 to 90366671 55 + TSS region transcription start site region 47074
Gm9958 5 90367204 to 90368487 1283 + unclassified gene predicted gene 9958
Tssr47075 5 90367571 to 90367589 18 + TSS region transcription start site region 47075
Gm10426 5 90377734 to 90379042 1308 protein coding gene predicted gene 10426
Gm43363 5 90397273 to 90399919 2646 + unclassified gene predicted gene 43363
Gm35999 5 90414392 to 90438690 24298 + lncRNA gene predicted gene, 35999
Tssr51747 5 90450154 to 90450158 4 - TSS region transcription start site region 51747