Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:8980541-10230170

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Crot 5 8966033 to 8997146 31113 - protein coding gene carnitine O-octanoyltransferase
Tssr50094 5 8995739 to 8995744 5 - TSS region transcription start site region 50094
Tssr50095 5 8996618 to 8996632 14 - TSS region transcription start site region 50095
Tssr50096 5 8996642 to 8996647 5 - TSS region transcription start site region 50096
Tssr50097 5 8996655 to 8996667 12 - TSS region transcription start site region 50097
Cpgi15539 5 8996841 to 8997573 732 CpG island CpG island 15539
Tssr50098 5 8996902 to 8996922 20 - TSS region transcription start site region 50098
Tssr50099 5 8996998 to 8997038 40 - TSS region transcription start site region 50099
Tssr50100 5 8997089 to 8997093 4 - TSS region transcription start site region 50100
Tssr50101 5 8997138 to 8997161 23 - TSS region transcription start site region 50101
Gm37153 5 8997159 to 8997389 230 + unclassified gene predicted gene, 37153
Tssr50102 5 8997165 to 8997172 7 - TSS region transcription start site region 50102
Gm27941 5 8997286 to 8997427 141 - unclassified non-coding RNA gene predicted gene, 27941
Gm15611 5 8998402 to 8999669 1267 - lincRNA gene predicted gene 15611
Gm40264 5 9034746 to 9038592 3846 + lincRNA gene predicted gene, 40264
Gm31449 5 9073427 to 9089632 16205 + lncRNA gene predicted gene, 31449
Tssr45146 5 9073720 to 9073729 9 + TSS region transcription start site region 45146
Cpgi15540 5 9100301 to 9101729 1428 CpG island CpG island 15540
Tssr45147 5 9100656 to 9100667 11 + TSS region transcription start site region 45147
Tssr45148 5 9100681 to 9100778 97 + TSS region transcription start site region 45148
Tmem243 5 9100737 to 9118983 18246 + protein coding gene transmembrane protein 243, mitochondrial
Tssr45149 5 9101088 to 9101107 19 + TSS region transcription start site region 45149
Tssr45150 5 9101202 to 9101232 30 + TSS region transcription start site region 45150
Tssr45151 5 9101236 to 9101302 66 + TSS region transcription start site region 45151
Tssr45152 5 9101319 to 9101345 26 + TSS region transcription start site region 45152
Tssr45153 5 9104822 to 9104827 5 + TSS region transcription start site region 45153
Tssr45154 5 9113245 to 9113262 17 + TSS region transcription start site region 45154
Tssr45155 5 9113264 to 9113282 18 + TSS region transcription start site region 45155
Tssr45156 5 9118578 to 9118595 17 + TSS region transcription start site region 45156
Tssr45157 5 9118713 to 9118733 20 + TSS region transcription start site region 45157
Tssr45158 5 9118838 to 9118843 5 + TSS region transcription start site region 45158
Dmtf1 5 9118868 to 9161776 42908 - protein coding gene cyclin D binding myb-like transcription factor 1
Tssr50103 5 9145938 to 9145961 23 - TSS region transcription start site region 50103
Gm46901 5 9158512 to 9161606 3094 - protein coding gene predicted gene, 46901
Tssr50104 5 9160908 to 9160912 4 - TSS region transcription start site region 50104
Cpgi15541 5 9160953 to 9162109 1156 CpG island CpG island 15541
Tssr50105 5 9161608 to 9161619 11 - TSS region transcription start site region 50105
Tssr50106 5 9161692 to 9161762 70 - TSS region transcription start site region 50106
Tssr45159 5 9161833 to 9161873 40 + TSS region transcription start site region 45159
Tssr45160 5 9161879 to 9161893 14 + TSS region transcription start site region 45160
Gm24666 5 9169063 to 9169229 166 + snRNA gene predicted gene, 24666
Gm7332 5 9260935 to 9261388 453 - pseudogene predicted gene 7332
Gm15734 5 9264222 to 9266022 1800 - lincRNA gene predicted gene 15734
Cpgi15542 5 9265810 to 9266621 811 CpG island CpG island 15542
Tssr45161 5 9266097 to 9266202 105 + TSS region transcription start site region 45161
9330182L06Rik 5 9266123 to 9481827 215704 + protein coding gene RIKEN cDNA 9330182L06 gene
Tssr45162 5 9295401 to 9295409 8 + TSS region transcription start site region 45162
Tssr50107 5 9300102 to 9300109 7 - TSS region transcription start site region 50107
Tssr50108 5 9300110 to 9300118 8 - TSS region transcription start site region 50108
Tssr50109 5 9300124 to 9300138 14 - TSS region transcription start site region 50109
Tssr50110 5 9300139 to 9300144 5 - TSS region transcription start site region 50110
Gm15733 5 9353759 to 9354000 241 + pseudogene predicted gene 15733
Mir879 5 9375704 to 9375779 75 + miRNA gene microRNA 879
Tssr50111 5 9480933 to 9480945 12 - TSS region transcription start site region 50111
Grm3 5 9485541 to 9725170 239629 - protein coding gene glutamate receptor, metabotropic 3
Tssr50112 5 9485641 to 9485645 4 - TSS region transcription start site region 50112
Cpgi15543 5 9570188 to 9570716 528 CpG island CpG island 15543
Gm42455 5 9599872 to 9602607 2735 - unclassified gene predicted gene 42455
Cpgi15544 5 9724918 to 9725375 457 CpG island CpG island 15544
Tssr50113 5 9725151 to 9725163 12 - TSS region transcription start site region 50113
Tssr50114 5 9725229 to 9725248 19 - TSS region transcription start site region 50114
Tssr50115 5 9725253 to 9725265 12 - TSS region transcription start site region 50115
Tssr50116 5 9725277 to 9725297 20 - TSS region transcription start site region 50116
Tssr50117 5 9725305 to 9725345 40 - TSS region transcription start site region 50117
Tssr50118 5 9725404 to 9725468 64 - TSS region transcription start site region 50118
Tssr50119 5 9725472 to 9725483 11 - TSS region transcription start site region 50119
Tssr50120 5 9725794 to 9725862 68 - TSS region transcription start site region 50120
Cpgi15545 5 9725840 to 9726155 315 CpG island CpG island 15545
Gm23312 5 9758839 to 9758940 101 - snRNA gene predicted gene, 23312
Gm35139 5 9768991 to 9769317 326 - pseudogene predicted gene, 35139
Gm35212 5 9779405 to 9780368 963 + pseudogene predicted gene, 35212
D5Mit178 5 9834048 to 9834340 292 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 178
Gm42832 5 9968674 to 9969418 744 + pseudogene predicted gene 42832
Gm6586 5 10067365 to 10070678 3313 + pseudogene predicted gene 6586
Gm5715 5 10116583 to 10118047 1464 + pseudogene predicted gene 5715
D5Mit248 5 10165764 to 10165889 125 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 248
D5Mit248.2 5 10165827 to 10165937 110 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 248.2
Gm10482 5 10187866 to 10237890 50024 + lincRNA gene predicted gene 10482