Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:88990346-89900366

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfibq5 5 84635994 to 89818182 5182188 QTL liver fibrosis QTL 5
Slc4a4 5 88886818 to 89239653 352835 + protein coding gene solute carrier family 4 (anion exchanger), member 4
Tssr47053 5 88992875 to 88992878 3 + TSS region transcription start site region 47053
Tssr47054 5 89027959 to 89027967 8 + TSS region transcription start site region 47054
Tssr47055 5 89027998 to 89028012 14 + TSS region transcription start site region 47055
Tssr47056 5 89028023 to 89028034 11 + TSS region transcription start site region 47056
Tssr47057 5 89028035 to 89028096 61 + TSS region transcription start site region 47057
Tssr47058 5 89028097 to 89028104 7 + TSS region transcription start site region 47058
Tssr47059 5 89028129 to 89028134 5 + TSS region transcription start site region 47059
D5Mit311 5 89050781 to 89050899 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 311
Tssr47060 5 89050787 to 89050791 4 + TSS region transcription start site region 47060
Tssr47061 5 89083764 to 89083771 7 + TSS region transcription start site region 47061
Tssr47062 5 89085500 to 89085520 20 + TSS region transcription start site region 47062
Tssr47063 5 89102050 to 89102059 9 + TSS region transcription start site region 47063
Tssr47064 5 89102097 to 89102127 30 + TSS region transcription start site region 47064
Tssr47065 5 89108733 to 89108744 11 + TSS region transcription start site region 47065
D5Dcr51 5 89144799 to 89144894 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 51
Tssr47066 5 89149353 to 89149369 16 + TSS region transcription start site region 47066
Tssr1536 5 89180817 to 89180821 4 + TSS region transcription start site region 1536
D5Mit274 5 89198911 to 89199011 100 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 274
Tssr51699 5 89209109 to 89209121 12 - TSS region transcription start site region 51699
Gm35855 5 89221737 to 89223927 2190 - lncRNA gene predicted gene, 35855
Tssr51700 5 89223857 to 89223887 30 - TSS region transcription start site region 51700
Tssr47067 5 89236279 to 89236289 10 + TSS region transcription start site region 47067
Tssr47068 5 89237256 to 89237269 13 + TSS region transcription start site region 47068
D5Mit272 5 89255624 to 89255751 127 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 272
D5Mit259 5 89271017 to 89271152 135 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 259
Hbnr10 5 89271017 to 89271152 135 QTL Heligmosomoides bakeri nematode resistance 10
D5Mit398 5 89271038 to 89271147 109 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 398
Tssr51701 5 89416278 to 89416283 5 - TSS region transcription start site region 51701
Tssr51702 5 89416339 to 89416342 3 - TSS region transcription start site region 51702
Gc 5 89417522 to 89457898 40376 - protein coding gene vitamin D binding protein
Tssr51703 5 89419049 to 89419053 4 - TSS region transcription start site region 51703
Tssr51704 5 89434624 to 89434658 34 - TSS region transcription start site region 51704
Tssr51705 5 89435022 to 89435057 35 - TSS region transcription start site region 51705
Tssr51706 5 89435577 to 89435588 11 - TSS region transcription start site region 51706
Tssr51707 5 89435610 to 89435648 38 - TSS region transcription start site region 51707
Tssr51708 5 89438265 to 89438274 9 - TSS region transcription start site region 51708
Tssr51709 5 89438442 to 89438455 13 - TSS region transcription start site region 51709
Tssr51710 5 89439608 to 89439646 38 - TSS region transcription start site region 51710
Tssr47069 5 89441191 to 89441224 33 + TSS region transcription start site region 47069
Tssr51711 5 89441263 to 89441303 40 - TSS region transcription start site region 51711
Tssr51712 5 89441595 to 89441613 18 - TSS region transcription start site region 51712
Tssr51713 5 89441614 to 89441632 18 - TSS region transcription start site region 51713
Tssr51714 5 89441635 to 89441647 12 - TSS region transcription start site region 51714
Tssr51715 5 89441652 to 89441670 18 - TSS region transcription start site region 51715
Tssr51716 5 89441671 to 89441691 20 - TSS region transcription start site region 51716
Tssr51717 5 89441881 to 89441892 11 - TSS region transcription start site region 51717
Tssr47070 5 89443408 to 89443445 37 + TSS region transcription start site region 47070
Tssr51718 5 89443473 to 89443493 20 - TSS region transcription start site region 51718
Tssr51719 5 89443514 to 89443535 21 - TSS region transcription start site region 51719
Tssr51720 5 89443559 to 89443583 24 - TSS region transcription start site region 51720
Tssr51721 5 89445317 to 89445328 11 - TSS region transcription start site region 51721
Tssr51722 5 89445346 to 89445366 20 - TSS region transcription start site region 51722
Tssr51723 5 89445371 to 89445389 18 - TSS region transcription start site region 51723
Tssr51724 5 89445394 to 89445432 38 - TSS region transcription start site region 51724
Tssr51725 5 89457763 to 89457784 21 - TSS region transcription start site region 51725
Gm6366 5 89499152 to 89499977 825 - pseudogene predicted gene 6366
Gm43515 5 89522860 to 89525000 2140 + unclassified gene predicted gene 43515
Cpgi16035 5 89526951 to 89527106 155 CpG island CpG island 16035
Npffr2 5 89527429 to 89583740 56311 + protein coding gene neuropeptide FF receptor 2
Gm7056 5 89616436 to 89622611 6175 + lncRNA gene predicted gene 7056
Tssr51726 5 89676898 to 89676902 4 - TSS region transcription start site region 51726
Adamts3 5 89677087 to 89883334 206247 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3
Gm25320 5 89681916 to 89682239 323 + unclassified non-coding RNA gene predicted gene, 25320
Gm42162 5 89689329 to 89690335 1006 - pseudogene predicted gene, 42162
Gm25758 5 89828871 to 89828999 128 + snoRNA gene predicted gene, 25758
Cpgi16036 5 89882218 to 89883935 1717 CpG island CpG island 16036
Tssr51727 5 89883297 to 89883309 12 - TSS region transcription start site region 51727
Tssr51728 5 89883321 to 89883343 22 - TSS region transcription start site region 51728
Tssr51729 5 89883345 to 89883378 33 - TSS region transcription start site region 51729
Tssr51730 5 89883465 to 89883512 47 - TSS region transcription start site region 51730
Eae39 5 118725963 to 89271017 -29454946 QTL experimental allergic encephalomyelitis susceptibility 39
Skts4 5 124100176 to 89271017 -34829159 QTL skin tumor susceptibility 4
Prnr1 5 146851125 to 89271017 -57580108 QTL prion resistance 1