Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:8893402-9104669

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15537 5 8893334 to 8894242 908 CpG island CpG island 15537
Tssr45134 5 8893568 to 8893580 12 + TSS region transcription start site region 45134
Tssr45135 5 8893606 to 8893617 11 + TSS region transcription start site region 45135
Tssr45136 5 8893677 to 8893745 68 + TSS region transcription start site region 45136
Abcb4 5 8893717 to 8959231 65514 + protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 4
Tssr45137 5 8893829 to 8893840 11 + TSS region transcription start site region 45137
Tssr45138 5 8893856 to 8893896 40 + TSS region transcription start site region 45138
Tssr45139 5 8893900 to 8893911 11 + TSS region transcription start site region 45139
Tssr45140 5 8893913 to 8893916 3 + TSS region transcription start site region 45140
Tssr45141 5 8893923 to 8893932 9 + TSS region transcription start site region 45141
Tssr45142 5 8893943 to 8893954 11 + TSS region transcription start site region 45142
Cpgi15538 5 8912750 to 8913110 360 CpG island CpG island 15538
Tssr45143 5 8912759 to 8912763 4 + TSS region transcription start site region 45143
Gm17936 5 8912974 to 8913954 980 + pseudogene predicted gene, 17936
Gm31388 5 8936829 to 8944505 7676 - lncRNA gene predicted gene, 31388
Tssr45144 5 8957179 to 8957183 4 + TSS region transcription start site region 45144
Crot 5 8966033 to 8997146 31113 - protein coding gene carnitine O-octanoyltransferase
Tssr45145 5 8971911 to 8971920 9 + TSS region transcription start site region 45145
Gm15610 5 8971948 to 8972142 194 + pseudogene predicted gene 15610
Tssr50094 5 8995739 to 8995744 5 - TSS region transcription start site region 50094
Tssr50095 5 8996618 to 8996632 14 - TSS region transcription start site region 50095
Tssr50096 5 8996642 to 8996647 5 - TSS region transcription start site region 50096
Tssr50097 5 8996655 to 8996667 12 - TSS region transcription start site region 50097
Cpgi15539 5 8996841 to 8997573 732 CpG island CpG island 15539
Tssr50098 5 8996902 to 8996922 20 - TSS region transcription start site region 50098
Tssr50099 5 8996998 to 8997038 40 - TSS region transcription start site region 50099
Tssr50100 5 8997089 to 8997093 4 - TSS region transcription start site region 50100
Tssr50101 5 8997138 to 8997161 23 - TSS region transcription start site region 50101
Gm37153 5 8997159 to 8997389 230 + unclassified gene predicted gene, 37153
Tssr50102 5 8997165 to 8997172 7 - TSS region transcription start site region 50102
Gm27941 5 8997286 to 8997427 141 - unclassified non-coding RNA gene predicted gene, 27941
Gm15611 5 8998402 to 8999669 1267 - lincRNA gene predicted gene 15611
Gm40264 5 9034746 to 9038592 3846 + lincRNA gene predicted gene, 40264
Gm31449 5 9073427 to 9089632 16205 + lncRNA gene predicted gene, 31449
Tssr45146 5 9073720 to 9073729 9 + TSS region transcription start site region 45146
Cpgi15540 5 9100301 to 9101729 1428 CpG island CpG island 15540
Tssr45147 5 9100656 to 9100667 11 + TSS region transcription start site region 45147
Tssr45148 5 9100681 to 9100778 97 + TSS region transcription start site region 45148
Tmem243 5 9100737 to 9118983 18246 + protein coding gene transmembrane protein 243, mitochondrial
Tssr45149 5 9101088 to 9101107 19 + TSS region transcription start site region 45149
Tssr45150 5 9101202 to 9101232 30 + TSS region transcription start site region 45150
Tssr45151 5 9101236 to 9101302 66 + TSS region transcription start site region 45151
Tssr45152 5 9101319 to 9101345 26 + TSS region transcription start site region 45152