Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:88788733-89428744

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr47044 5 88793865 to 88793874 9 + TSS region transcription start site region 47044
Tssr47045 5 88793886 to 88793897 11 + TSS region transcription start site region 47045
Gm42912 5 88793896 to 88813470 19574 + lincRNA gene predicted gene 42912
Tssr47046 5 88793933 to 88793936 3 + TSS region transcription start site region 47046
Tssr47047 5 88793942 to 88793945 3 + TSS region transcription start site region 47047
Gm42911 5 88803594 to 88805223 1629 - pseudogene predicted gene 42911
Tssr47048 5 88815831 to 88815840 9 + TSS region transcription start site region 47048
Tssr1535 5 88815860 to 88815868 8 + TSS region transcription start site region 1535
Tssr47049 5 88825180 to 88825184 4 + TSS region transcription start site region 47049
Mkrn1-ps1 5 88838010 to 88839399 1389 - pseudogene makorin, ring finger protein 1, pseudogene 1
Cpgi16034 5 88886415 to 88888031 1616 CpG island CpG island 16034
Tssr47050 5 88886809 to 88886825 16 + TSS region transcription start site region 47050
Slc4a4 5 88886818 to 89239653 352835 + protein coding gene solute carrier family 4 (anion exchanger), member 4
Tssr47051 5 88934212 to 88934239 27 + TSS region transcription start site region 47051
Tssr47052 5 88934331 to 88934345 14 + TSS region transcription start site region 47052
D5Mit40 5 88947265 to 88947451 186 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 40
D5Mit17 5 88947303 to 88947418 115 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 17
Tssr47053 5 88992875 to 88992878 3 + TSS region transcription start site region 47053
Tssr47054 5 89027959 to 89027967 8 + TSS region transcription start site region 47054
Tssr47055 5 89027998 to 89028012 14 + TSS region transcription start site region 47055
Tssr47056 5 89028023 to 89028034 11 + TSS region transcription start site region 47056
Tssr47057 5 89028035 to 89028096 61 + TSS region transcription start site region 47057
Tssr47058 5 89028097 to 89028104 7 + TSS region transcription start site region 47058
Tssr47059 5 89028129 to 89028134 5 + TSS region transcription start site region 47059
D5Mit311 5 89050781 to 89050899 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 311
Tssr47060 5 89050787 to 89050791 4 + TSS region transcription start site region 47060
Tssr47061 5 89083764 to 89083771 7 + TSS region transcription start site region 47061
Tssr47062 5 89085500 to 89085520 20 + TSS region transcription start site region 47062
Tssr47063 5 89102050 to 89102059 9 + TSS region transcription start site region 47063
Tssr47064 5 89102097 to 89102127 30 + TSS region transcription start site region 47064
Tssr47065 5 89108733 to 89108744 11 + TSS region transcription start site region 47065
D5Dcr51 5 89144799 to 89144894 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 51
Tssr47066 5 89149353 to 89149369 16 + TSS region transcription start site region 47066
Tssr1536 5 89180817 to 89180821 4 + TSS region transcription start site region 1536
D5Mit274 5 89198911 to 89199011 100 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 274
Tssr51699 5 89209109 to 89209121 12 - TSS region transcription start site region 51699
Gm35855 5 89221737 to 89223927 2190 - lncRNA gene predicted gene, 35855
Tssr51700 5 89223857 to 89223887 30 - TSS region transcription start site region 51700
Tssr47067 5 89236279 to 89236289 10 + TSS region transcription start site region 47067
Tssr47068 5 89237256 to 89237269 13 + TSS region transcription start site region 47068
D5Mit272 5 89255624 to 89255751 127 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 272
Hbnr10 5 89271017 to 89271152 135 QTL Heligmosomoides bakeri nematode resistance 10
D5Mit259 5 89271017 to 89271152 135 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 259
D5Mit398 5 89271038 to 89271147 109 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 398
Tssr51701 5 89416278 to 89416283 5 - TSS region transcription start site region 51701
Tssr51702 5 89416339 to 89416342 3 - TSS region transcription start site region 51702
Gc 5 89417522 to 89457898 40376 - protein coding gene vitamin D binding protein
Tssr51703 5 89419049 to 89419053 4 - TSS region transcription start site region 51703
Eae39 5 118725963 to 89271017 -29454946 QTL experimental allergic encephalomyelitis susceptibility 39
Skts4 5 124100176 to 89271017 -34829159 QTL skin tumor susceptibility 4
Prnr1 5 146851125 to 89271017 -57580108 QTL prion resistance 1