Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:88582959-89472967

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rufy3 5 88565040 to 88651392 86352 + protein coding gene RUN and FYVE domain containing 3
Tssr47010 5 88583469 to 88583484 15 + TSS region transcription start site region 47010
Tssr47011 5 88583507 to 88583523 16 + TSS region transcription start site region 47011
Tssr47012 5 88583527 to 88583590 63 + TSS region transcription start site region 47012
Tssr47013 5 88583591 to 88583602 11 + TSS region transcription start site region 47013
Tssr47014 5 88583603 to 88583606 3 + TSS region transcription start site region 47014
Tssr47015 5 88583999 to 88584005 6 + TSS region transcription start site region 47015
Tssr47016 5 88584175 to 88584200 25 + TSS region transcription start site region 47016
Tssr47017 5 88584213 to 88584230 17 + TSS region transcription start site region 47017
Tssr47018 5 88593678 to 88593713 35 + TSS region transcription start site region 47018
Tssr47019 5 88650702 to 88650713 11 + TSS region transcription start site region 47019
Tssr47020 5 88650745 to 88650749 4 + TSS region transcription start site region 47020
Tssr47021 5 88657435 to 88657479 44 + TSS region transcription start site region 47021
Grsf1 5 88659448 to 88676171 16723 - protein coding gene G-rich RNA sequence binding factor 1
Tssr51688 5 88670206 to 88670256 50 - TSS region transcription start site region 51688
Cpgi16030 5 88674892 to 88676490 1598 CpG island CpG island 16030
Tssr51689 5 88675190 to 88675227 37 - TSS region transcription start site region 51689
Tssr51690 5 88675542 to 88675563 21 - TSS region transcription start site region 51690
Tssr51691 5 88675565 to 88675592 27 - TSS region transcription start site region 51691
Tssr51692 5 88675613 to 88675655 42 - TSS region transcription start site region 51692
Tssr51693 5 88676111 to 88676129 18 - TSS region transcription start site region 51693
Tssr51694 5 88676135 to 88676186 51 - TSS region transcription start site region 51694
Tssr51695 5 88676192 to 88676209 17 - TSS region transcription start site region 51695
Tssr51696 5 88676226 to 88676237 11 - TSS region transcription start site region 51696
Cpgi16031 5 88688913 to 88689113 200 CpG island CpG island 16031
Cpgi16032 5 88720553 to 88722069 1516 CpG island CpG island 16032
Tssr51697 5 88720769 to 88720782 13 - TSS region transcription start site region 51697
Tssr47022 5 88720857 to 88720876 19 + TSS region transcription start site region 47022
Mob1b 5 88720871 to 88758455 37584 + protein coding gene MOB kinase activator 1B
Tssr47023 5 88720879 to 88720925 46 + TSS region transcription start site region 47023
Tssr47024 5 88720929 to 88720977 48 + TSS region transcription start site region 47024
Tssr47025 5 88721057 to 88721065 8 + TSS region transcription start site region 47025
Gm15682 5 88739247 to 88739729 482 - pseudogene predicted gene 15682
Tssr51698 5 88739771 to 88739774 3 - TSS region transcription start site region 51698
Tssr47026 5 88750667 to 88750671 4 + TSS region transcription start site region 47026
Tssr47027 5 88758078 to 88758092 14 + TSS region transcription start site region 47027
Tssr47028 5 88758637 to 88758642 5 + TSS region transcription start site region 47028
Cpgi16033 5 88764789 to 88765639 850 CpG island CpG island 16033
Tssr47029 5 88764928 to 88764946 18 + TSS region transcription start site region 47029
Tssr47030 5 88764983 to 88764995 12 + TSS region transcription start site region 47030
Tssr47031 5 88765004 to 88765030 26 + TSS region transcription start site region 47031
Dck 5 88765013 to 88783277 18264 + protein coding gene deoxycytidine kinase
Tssr47032 5 88765036 to 88765054 18 + TSS region transcription start site region 47032
Tssr47033 5 88765149 to 88765160 11 + TSS region transcription start site region 47033
Tssr47034 5 88765169 to 88765191 22 + TSS region transcription start site region 47034
Tssr47035 5 88765192 to 88765199 7 + TSS region transcription start site region 47035
Tssr47036 5 88765200 to 88765211 11 + TSS region transcription start site region 47036
Tssr47037 5 88765212 to 88765223 11 + TSS region transcription start site region 47037
Tssr47038 5 88765849 to 88765852 3 + TSS region transcription start site region 47038
Tssr47039 5 88781961 to 88781973 12 + TSS region transcription start site region 47039
Tssr47040 5 88782029 to 88782040 11 + TSS region transcription start site region 47040
Tssr47041 5 88782192 to 88782203 11 + TSS region transcription start site region 47041
Tssr47042 5 88782266 to 88782301 35 + TSS region transcription start site region 47042
Tssr47043 5 88782537 to 88782573 36 + TSS region transcription start site region 47043
Tssr47044 5 88793865 to 88793874 9 + TSS region transcription start site region 47044
Tssr47045 5 88793886 to 88793897 11 + TSS region transcription start site region 47045
Gm42912 5 88793896 to 88813470 19574 + lincRNA gene predicted gene 42912
Tssr47046 5 88793933 to 88793936 3 + TSS region transcription start site region 47046
Tssr47047 5 88793942 to 88793945 3 + TSS region transcription start site region 47047
Gm42911 5 88803594 to 88805223 1629 - pseudogene predicted gene 42911
Tssr47048 5 88815831 to 88815840 9 + TSS region transcription start site region 47048
Tssr1535 5 88815860 to 88815868 8 + TSS region transcription start site region 1535
Tssr47049 5 88825180 to 88825184 4 + TSS region transcription start site region 47049
Mkrn1-ps1 5 88838010 to 88839399 1389 - pseudogene makorin, ring finger protein 1, pseudogene 1
Cpgi16034 5 88886415 to 88888031 1616 CpG island CpG island 16034
Tssr47050 5 88886809 to 88886825 16 + TSS region transcription start site region 47050
Slc4a4 5 88886818 to 89239653 352835 + protein coding gene solute carrier family 4 (anion exchanger), member 4
Tssr47051 5 88934212 to 88934239 27 + TSS region transcription start site region 47051
Tssr47052 5 88934331 to 88934345 14 + TSS region transcription start site region 47052
D5Mit40 5 88947265 to 88947451 186 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 40
D5Mit17 5 88947303 to 88947418 115 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 17
Tssr47053 5 88992875 to 88992878 3 + TSS region transcription start site region 47053
Tssr47054 5 89027959 to 89027967 8 + TSS region transcription start site region 47054
Tssr47055 5 89027998 to 89028012 14 + TSS region transcription start site region 47055
Tssr47056 5 89028023 to 89028034 11 + TSS region transcription start site region 47056
Tssr47057 5 89028035 to 89028096 61 + TSS region transcription start site region 47057
Tssr47058 5 89028097 to 89028104 7 + TSS region transcription start site region 47058
Tssr47059 5 89028129 to 89028134 5 + TSS region transcription start site region 47059
D5Mit311 5 89050781 to 89050899 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 311
Tssr47060 5 89050787 to 89050791 4 + TSS region transcription start site region 47060
Tssr47061 5 89083764 to 89083771 7 + TSS region transcription start site region 47061
Tssr47062 5 89085500 to 89085520 20 + TSS region transcription start site region 47062
Tssr47063 5 89102050 to 89102059 9 + TSS region transcription start site region 47063
Tssr47064 5 89102097 to 89102127 30 + TSS region transcription start site region 47064
Tssr47065 5 89108733 to 89108744 11 + TSS region transcription start site region 47065
D5Dcr51 5 89144799 to 89144894 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 51
Tssr47066 5 89149353 to 89149369 16 + TSS region transcription start site region 47066
Tssr1536 5 89180817 to 89180821 4 + TSS region transcription start site region 1536
D5Mit274 5 89198911 to 89199011 100 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 274
Tssr51699 5 89209109 to 89209121 12 - TSS region transcription start site region 51699
Gm35855 5 89221737 to 89223927 2190 - lncRNA gene predicted gene, 35855
Tssr51700 5 89223857 to 89223887 30 - TSS region transcription start site region 51700
Tssr47067 5 89236279 to 89236289 10 + TSS region transcription start site region 47067
Tssr47068 5 89237256 to 89237269 13 + TSS region transcription start site region 47068
D5Mit272 5 89255624 to 89255751 127 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 272
D5Mit259 5 89271017 to 89271152 135 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 259
Hbnr10 5 89271017 to 89271152 135 QTL Heligmosomoides bakeri nematode resistance 10
D5Mit398 5 89271038 to 89271147 109 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 398
Tssr51701 5 89416278 to 89416283 5 - TSS region transcription start site region 51701
Tssr51702 5 89416339 to 89416342 3 - TSS region transcription start site region 51702
Gc 5 89417522 to 89457898 40376 - protein coding gene vitamin D binding protein
Tssr51703 5 89419049 to 89419053 4 - TSS region transcription start site region 51703
Tssr51704 5 89434624 to 89434658 34 - TSS region transcription start site region 51704
Tssr51705 5 89435022 to 89435057 35 - TSS region transcription start site region 51705
Tssr51706 5 89435577 to 89435588 11 - TSS region transcription start site region 51706
Tssr51707 5 89435610 to 89435648 38 - TSS region transcription start site region 51707
Tssr51708 5 89438265 to 89438274 9 - TSS region transcription start site region 51708
Tssr51709 5 89438442 to 89438455 13 - TSS region transcription start site region 51709
Tssr51710 5 89439608 to 89439646 38 - TSS region transcription start site region 51710
Tssr47069 5 89441191 to 89441224 33 + TSS region transcription start site region 47069
Tssr51711 5 89441263 to 89441303 40 - TSS region transcription start site region 51711
Tssr51712 5 89441595 to 89441613 18 - TSS region transcription start site region 51712
Tssr51713 5 89441614 to 89441632 18 - TSS region transcription start site region 51713
Tssr51714 5 89441635 to 89441647 12 - TSS region transcription start site region 51714
Tssr51715 5 89441652 to 89441670 18 - TSS region transcription start site region 51715
Tssr51716 5 89441671 to 89441691 20 - TSS region transcription start site region 51716
Tssr51717 5 89441881 to 89441892 11 - TSS region transcription start site region 51717
Tssr47070 5 89443408 to 89443445 37 + TSS region transcription start site region 47070
Tssr51718 5 89443473 to 89443493 20 - TSS region transcription start site region 51718
Tssr51719 5 89443514 to 89443535 21 - TSS region transcription start site region 51719
Tssr51720 5 89443559 to 89443583 24 - TSS region transcription start site region 51720
Tssr51721 5 89445317 to 89445328 11 - TSS region transcription start site region 51721
Tssr51722 5 89445346 to 89445366 20 - TSS region transcription start site region 51722
Tssr51723 5 89445371 to 89445389 18 - TSS region transcription start site region 51723
Tssr51724 5 89445394 to 89445432 38 - TSS region transcription start site region 51724
Tssr51725 5 89457763 to 89457784 21 - TSS region transcription start site region 51725
Eae39 5 118725963 to 89271017 -29454946 QTL experimental allergic encephalomyelitis susceptibility 39
Skts4 5 124100176 to 89271017 -34829159 QTL skin tumor susceptibility 4
Prnr1 5 146851125 to 89271017 -57580108 QTL prion resistance 1