Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:88382975-88611049

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Amtn 5 88376108 to 88385916 9808 + protein coding gene amelotin
Gm43431 5 88423215 to 88423554 339 + pseudogene predicted gene 43431
Gm7721 5 88427813 to 88428358 545 + pseudogene predicted gene 7721
Tssr46997 5 88455988 to 88455993 5 + TSS region transcription start site region 46997
Ambn 5 88455991 to 88468531 12540 + protein coding gene ameloblastin
D5Mit273.1 5 88472388 to 88472503 115 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 273.1
D5Mit273 5 88472438 to 88472583 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 273
Enam 5 88487975 to 88506049 18074 + protein coding gene enamelin
Jchain 5 88519809 to 88527891 8082 - protein coding gene immunoglobulin joining chain
Tssr46998 5 88520589 to 88520607 18 + TSS region transcription start site region 46998
Tssr51678 5 88521206 to 88521209 3 - TSS region transcription start site region 51678
Tssr46999 5 88521246 to 88521264 18 + TSS region transcription start site region 46999
Tssr51679 5 88522534 to 88522555 21 - TSS region transcription start site region 51679
Tssr51680 5 88526496 to 88526506 10 - TSS region transcription start site region 51680
Tssr51681 5 88526517 to 88526540 23 - TSS region transcription start site region 51681
Tssr51682 5 88527795 to 88527820 25 - TSS region transcription start site region 51682
Tssr51683 5 88527841 to 88527852 11 - TSS region transcription start site region 51683
Tssr47000 5 88531965 to 88531975 10 + TSS region transcription start site region 47000
Gm43432 5 88545036 to 88545156 120 - pseudogene predicted gene 43432
Tssr47001 5 88553774 to 88553780 6 + TSS region transcription start site region 47001
Cpgi16028 5 88553820 to 88555054 1234 CpG island CpG island 16028
Tssr51684 5 88554126 to 88554189 63 - TSS region transcription start site region 51684
Tssr47002 5 88554425 to 88554442 17 + TSS region transcription start site region 47002
Tssr47003 5 88554448 to 88554495 47 + TSS region transcription start site region 47003
Utp3 5 88554483 to 88556083 1600 + protein coding gene UTP3 small subunit processome component
Gm42107 5 88563440 to 88564861 1421 - lncRNA gene predicted gene, 42107
Cpgi16029 5 88564615 to 88566100 1485 CpG island CpG island 16029
Tssr51685 5 88564818 to 88564829 11 - TSS region transcription start site region 51685
Tssr51686 5 88564833 to 88564905 72 - TSS region transcription start site region 51686
Tssr47004 5 88564982 to 88565005 23 + TSS region transcription start site region 47004
Tssr47005 5 88565009 to 88565058 49 + TSS region transcription start site region 47005
Rufy3 5 88565040 to 88651392 86352 + protein coding gene RUN and FYVE domain containing 3
Tssr47006 5 88565314 to 88565337 23 + TSS region transcription start site region 47006
Tssr51687 5 88565554 to 88565561 7 - TSS region transcription start site region 51687
Tssr47007 5 88568470 to 88568474 4 + TSS region transcription start site region 47007
Tssr47008 5 88581419 to 88581426 7 + TSS region transcription start site region 47008
Tssr47009 5 88581474 to 88581487 13 + TSS region transcription start site region 47009
Tssr47010 5 88583469 to 88583484 15 + TSS region transcription start site region 47010
Tssr47011 5 88583507 to 88583523 16 + TSS region transcription start site region 47011
Tssr47012 5 88583527 to 88583590 63 + TSS region transcription start site region 47012
Tssr47013 5 88583591 to 88583602 11 + TSS region transcription start site region 47013
Tssr47014 5 88583603 to 88583606 3 + TSS region transcription start site region 47014
Tssr47015 5 88583999 to 88584005 6 + TSS region transcription start site region 47015
Tssr47016 5 88584175 to 88584200 25 + TSS region transcription start site region 47016
Tssr47017 5 88584213 to 88584230 17 + TSS region transcription start site region 47017
Tssr47018 5 88593678 to 88593713 35 + TSS region transcription start site region 47018