Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:88135040-89081392

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160 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42622 5 88144704 to 88145058 354 + pseudogene predicted gene 42622
Gm11115 5 88154023 to 88154099 76 - protein coding gene predicted gene 11115
Tssr46973 5 88196986 to 88196993 7 + TSS region transcription start site region 46973
Gm42621 5 88196988 to 88201407 4419 + pseudogene predicted gene 42621
Gm42164 5 88210659 to 88211037 378 + pseudogene predicted gene, 42164
Gm7048 5 88231350 to 88233240 1890 + pseudogene predicted gene 7048
Gm7714 5 88268919 to 88282835 13916 + protein coding gene predicted gene 7714
Tssr46974 5 88268923 to 88268934 11 + TSS region transcription start site region 46974
1700041A01Rik 5 88291361 to 88301023 9662 - lncRNA gene RIKEN cDNA 1700041A01 gene
Tssr46975 5 88317077 to 88317086 9 + TSS region transcription start site region 46975
Tssr46976 5 88317287 to 88317306 19 + TSS region transcription start site region 46976
Prol1 5 88317312 to 88328814 11502 + protein coding gene proline rich, lacrimal 1
Tssr46977 5 88318566 to 88318571 5 + TSS region transcription start site region 46977
Tssr46978 5 88318573 to 88318590 17 + TSS region transcription start site region 46978
Tssr46979 5 88327804 to 88327820 16 + TSS region transcription start site region 46979
Tssr46980 5 88327825 to 88327837 12 + TSS region transcription start site region 46980
Tssr46981 5 88327846 to 88327859 13 + TSS region transcription start site region 46981
Tssr46982 5 88327863 to 88327878 15 + TSS region transcription start site region 46982
Tssr46983 5 88327888 to 88327902 14 + TSS region transcription start site region 46983
Tssr46984 5 88327904 to 88327920 16 + TSS region transcription start site region 46984
Tssr46985 5 88327924 to 88327931 7 + TSS region transcription start site region 46985
Tssr46986 5 88327938 to 88328011 73 + TSS region transcription start site region 46986
Tssr51668 5 88328007 to 88328013 6 - TSS region transcription start site region 51668
Tssr46987 5 88328028 to 88328042 14 + TSS region transcription start site region 46987
Tssr51669 5 88328041 to 88328046 5 - TSS region transcription start site region 51669
Tssr46988 5 88328050 to 88328088 38 + TSS region transcription start site region 46988
Tssr51670 5 88328080 to 88328134 54 - TSS region transcription start site region 51670
Tssr46989 5 88328089 to 88328101 12 + TSS region transcription start site region 46989
Tssr46990 5 88328128 to 88328141 13 + TSS region transcription start site region 46990
Tssr46991 5 88328145 to 88328178 33 + TSS region transcription start site region 46991
Tssr51671 5 88328157 to 88328172 15 - TSS region transcription start site region 51671
Tssr1533 5 88328205 to 88328208 3 - TSS region transcription start site region 1533
Tssr46992 5 88328206 to 88328222 16 + TSS region transcription start site region 46992
Tssr46993 5 88328223 to 88328257 34 + TSS region transcription start site region 46993
Tssr1534 5 88328242 to 88328252 10 - TSS region transcription start site region 1534
Tssr51672 5 88328268 to 88328301 33 - TSS region transcription start site region 51672
Tssr46994 5 88328283 to 88328335 52 + TSS region transcription start site region 46994
Tssr51673 5 88328319 to 88328370 51 - TSS region transcription start site region 51673
Tssr46995 5 88328341 to 88328373 32 + TSS region transcription start site region 46995
Tssr51674 5 88328374 to 88328405 31 - TSS region transcription start site region 51674
Tssr46996 5 88328419 to 88328424 5 + TSS region transcription start site region 46996
Tssr51675 5 88328454 to 88328475 21 - TSS region transcription start site region 51675
Tssr51676 5 88328510 to 88328533 23 - TSS region transcription start site region 51676
Tssr51677 5 88328535 to 88328580 45 - TSS region transcription start site region 51677
Amtn 5 88376108 to 88385916 9808 + protein coding gene amelotin
Gm43431 5 88423215 to 88423554 339 + pseudogene predicted gene 43431
Gm7721 5 88427813 to 88428358 545 + pseudogene predicted gene 7721
Tssr46997 5 88455988 to 88455993 5 + TSS region transcription start site region 46997
Ambn 5 88455991 to 88468531 12540 + protein coding gene ameloblastin
D5Mit273.1 5 88472388 to 88472503 115 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 273.1
D5Mit273 5 88472438 to 88472583 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 273
Enam 5 88487975 to 88506049 18074 + protein coding gene enamelin
Jchain 5 88519809 to 88527891 8082 - protein coding gene immunoglobulin joining chain
Tssr46998 5 88520589 to 88520607 18 + TSS region transcription start site region 46998
Tssr51678 5 88521206 to 88521209 3 - TSS region transcription start site region 51678
Tssr46999 5 88521246 to 88521264 18 + TSS region transcription start site region 46999
Tssr51679 5 88522534 to 88522555 21 - TSS region transcription start site region 51679
Tssr51680 5 88526496 to 88526506 10 - TSS region transcription start site region 51680
Tssr51681 5 88526517 to 88526540 23 - TSS region transcription start site region 51681
Tssr51682 5 88527795 to 88527820 25 - TSS region transcription start site region 51682
Tssr51683 5 88527841 to 88527852 11 - TSS region transcription start site region 51683
Tssr47000 5 88531965 to 88531975 10 + TSS region transcription start site region 47000
Gm43432 5 88545036 to 88545156 120 - pseudogene predicted gene 43432
Tssr47001 5 88553774 to 88553780 6 + TSS region transcription start site region 47001
Cpgi16028 5 88553820 to 88555054 1234 CpG island CpG island 16028
Tssr51684 5 88554126 to 88554189 63 - TSS region transcription start site region 51684
Tssr47002 5 88554425 to 88554442 17 + TSS region transcription start site region 47002
Tssr47003 5 88554448 to 88554495 47 + TSS region transcription start site region 47003
Utp3 5 88554483 to 88556083 1600 + protein coding gene UTP3 small subunit processome component
Gm42107 5 88563440 to 88564861 1421 - lncRNA gene predicted gene, 42107
Cpgi16029 5 88564615 to 88566100 1485 CpG island CpG island 16029
Tssr51685 5 88564818 to 88564829 11 - TSS region transcription start site region 51685
Tssr51686 5 88564833 to 88564905 72 - TSS region transcription start site region 51686
Tssr47004 5 88564982 to 88565005 23 + TSS region transcription start site region 47004
Tssr47005 5 88565009 to 88565058 49 + TSS region transcription start site region 47005
Rufy3 5 88565040 to 88651392 86352 + protein coding gene RUN and FYVE domain containing 3
Tssr47006 5 88565314 to 88565337 23 + TSS region transcription start site region 47006
Tssr51687 5 88565554 to 88565561 7 - TSS region transcription start site region 51687
Tssr47007 5 88568470 to 88568474 4 + TSS region transcription start site region 47007
Tssr47008 5 88581419 to 88581426 7 + TSS region transcription start site region 47008
Tssr47009 5 88581474 to 88581487 13 + TSS region transcription start site region 47009
Tssr47010 5 88583469 to 88583484 15 + TSS region transcription start site region 47010
Tssr47011 5 88583507 to 88583523 16 + TSS region transcription start site region 47011
Tssr47012 5 88583527 to 88583590 63 + TSS region transcription start site region 47012
Tssr47013 5 88583591 to 88583602 11 + TSS region transcription start site region 47013
Tssr47014 5 88583603 to 88583606 3 + TSS region transcription start site region 47014
Tssr47015 5 88583999 to 88584005 6 + TSS region transcription start site region 47015
Tssr47016 5 88584175 to 88584200 25 + TSS region transcription start site region 47016
Tssr47017 5 88584213 to 88584230 17 + TSS region transcription start site region 47017
Tssr47018 5 88593678 to 88593713 35 + TSS region transcription start site region 47018
Tssr47019 5 88650702 to 88650713 11 + TSS region transcription start site region 47019
Tssr47020 5 88650745 to 88650749 4 + TSS region transcription start site region 47020
Tssr47021 5 88657435 to 88657479 44 + TSS region transcription start site region 47021
Grsf1 5 88659448 to 88676171 16723 - protein coding gene G-rich RNA sequence binding factor 1
Tssr51688 5 88670206 to 88670256 50 - TSS region transcription start site region 51688
Cpgi16030 5 88674892 to 88676490 1598 CpG island CpG island 16030
Tssr51689 5 88675190 to 88675227 37 - TSS region transcription start site region 51689
Tssr51690 5 88675542 to 88675563 21 - TSS region transcription start site region 51690
Tssr51691 5 88675565 to 88675592 27 - TSS region transcription start site region 51691
Tssr51692 5 88675613 to 88675655 42 - TSS region transcription start site region 51692
Tssr51693 5 88676111 to 88676129 18 - TSS region transcription start site region 51693
Tssr51694 5 88676135 to 88676186 51 - TSS region transcription start site region 51694
Tssr51695 5 88676192 to 88676209 17 - TSS region transcription start site region 51695
Tssr51696 5 88676226 to 88676237 11 - TSS region transcription start site region 51696
Cpgi16031 5 88688913 to 88689113 200 CpG island CpG island 16031
Cpgi16032 5 88720553 to 88722069 1516 CpG island CpG island 16032
Tssr51697 5 88720769 to 88720782 13 - TSS region transcription start site region 51697
Tssr47022 5 88720857 to 88720876 19 + TSS region transcription start site region 47022
Mob1b 5 88720871 to 88758455 37584 + protein coding gene MOB kinase activator 1B
Tssr47023 5 88720879 to 88720925 46 + TSS region transcription start site region 47023
Tssr47024 5 88720929 to 88720977 48 + TSS region transcription start site region 47024
Tssr47025 5 88721057 to 88721065 8 + TSS region transcription start site region 47025
Gm15682 5 88739247 to 88739729 482 - pseudogene predicted gene 15682
Tssr51698 5 88739771 to 88739774 3 - TSS region transcription start site region 51698
Tssr47026 5 88750667 to 88750671 4 + TSS region transcription start site region 47026
Tssr47027 5 88758078 to 88758092 14 + TSS region transcription start site region 47027
Tssr47028 5 88758637 to 88758642 5 + TSS region transcription start site region 47028
Cpgi16033 5 88764789 to 88765639 850 CpG island CpG island 16033
Tssr47029 5 88764928 to 88764946 18 + TSS region transcription start site region 47029
Tssr47030 5 88764983 to 88764995 12 + TSS region transcription start site region 47030
Tssr47031 5 88765004 to 88765030 26 + TSS region transcription start site region 47031
Dck 5 88765013 to 88783277 18264 + protein coding gene deoxycytidine kinase
Tssr47032 5 88765036 to 88765054 18 + TSS region transcription start site region 47032
Tssr47033 5 88765149 to 88765160 11 + TSS region transcription start site region 47033
Tssr47034 5 88765169 to 88765191 22 + TSS region transcription start site region 47034
Tssr47035 5 88765192 to 88765199 7 + TSS region transcription start site region 47035
Tssr47036 5 88765200 to 88765211 11 + TSS region transcription start site region 47036
Tssr47037 5 88765212 to 88765223 11 + TSS region transcription start site region 47037
Tssr47038 5 88765849 to 88765852 3 + TSS region transcription start site region 47038
Tssr47039 5 88781961 to 88781973 12 + TSS region transcription start site region 47039
Tssr47040 5 88782029 to 88782040 11 + TSS region transcription start site region 47040
Tssr47041 5 88782192 to 88782203 11 + TSS region transcription start site region 47041
Tssr47042 5 88782266 to 88782301 35 + TSS region transcription start site region 47042
Tssr47043 5 88782537 to 88782573 36 + TSS region transcription start site region 47043
Tssr47044 5 88793865 to 88793874 9 + TSS region transcription start site region 47044
Tssr47045 5 88793886 to 88793897 11 + TSS region transcription start site region 47045
Gm42912 5 88793896 to 88813470 19574 + lincRNA gene predicted gene 42912
Tssr47046 5 88793933 to 88793936 3 + TSS region transcription start site region 47046
Tssr47047 5 88793942 to 88793945 3 + TSS region transcription start site region 47047
Gm42911 5 88803594 to 88805223 1629 - pseudogene predicted gene 42911
Tssr47048 5 88815831 to 88815840 9 + TSS region transcription start site region 47048
Tssr1535 5 88815860 to 88815868 8 + TSS region transcription start site region 1535
Tssr47049 5 88825180 to 88825184 4 + TSS region transcription start site region 47049
Mkrn1-ps1 5 88838010 to 88839399 1389 - pseudogene makorin, ring finger protein 1, pseudogene 1
Cpgi16034 5 88886415 to 88888031 1616 CpG island CpG island 16034
Tssr47050 5 88886809 to 88886825 16 + TSS region transcription start site region 47050
Slc4a4 5 88886818 to 89239653 352835 + protein coding gene solute carrier family 4 (anion exchanger), member 4
Tssr47051 5 88934212 to 88934239 27 + TSS region transcription start site region 47051
Tssr47052 5 88934331 to 88934345 14 + TSS region transcription start site region 47052
D5Mit40 5 88947265 to 88947451 186 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 40
D5Mit17 5 88947303 to 88947418 115 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 17
Tssr47053 5 88992875 to 88992878 3 + TSS region transcription start site region 47053
Tssr47054 5 89027959 to 89027967 8 + TSS region transcription start site region 47054
Tssr47055 5 89027998 to 89028012 14 + TSS region transcription start site region 47055
Tssr47056 5 89028023 to 89028034 11 + TSS region transcription start site region 47056
Tssr47057 5 89028035 to 89028096 61 + TSS region transcription start site region 47057
Tssr47058 5 89028097 to 89028104 7 + TSS region transcription start site region 47058
Tssr47059 5 89028129 to 89028134 5 + TSS region transcription start site region 47059
D5Mit311 5 89050781 to 89050899 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 311
Tssr47060 5 89050787 to 89050791 4 + TSS region transcription start site region 47060