Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:87977888-88677902

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128 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700066N21Rik 5 87908588 to 87979351 70763 - antisense lncRNA gene RIKEN cDNA 1700066N21 gene
Gm28434 5 87969517 to 88008277 38760 + protein coding gene predicted gene 28434
Tssr46963 5 87979432 to 87979458 26 + TSS region transcription start site region 46963
Cabs1 5 87979451 to 87981541 2090 + protein coding gene calcium binding protein, spermatid specific 1
Tssr46964 5 87979470 to 87979477 7 + TSS region transcription start site region 46964
Tssr46965 5 88002486 to 88002497 11 + TSS region transcription start site region 46965
Tssr46966 5 88002530 to 88002552 22 + TSS region transcription start site region 46966
Smr3a 5 88002549 to 88008534 5985 + protein coding gene submaxillary gland androgen regulated protein 3A
Tssr46967 5 88002555 to 88002564 9 + TSS region transcription start site region 46967
Tssr46968 5 88002579 to 88002583 4 + TSS region transcription start site region 46968
Tssr46969 5 88008045 to 88008054 9 + TSS region transcription start site region 46969
Tssr46970 5 88008069 to 88008097 28 + TSS region transcription start site region 46970
Tssr51662 5 88008076 to 88008080 4 - TSS region transcription start site region 51662
Tssr51663 5 88008107 to 88008125 18 - TSS region transcription start site region 51663
Tssr46971 5 88008119 to 88008122 3 + TSS region transcription start site region 46971
Tssr46972 5 88008185 to 88008207 22 + TSS region transcription start site region 46972
Tssr51664 5 88008224 to 88008229 5 - TSS region transcription start site region 51664
Tssr51665 5 88008250 to 88008279 29 - TSS region transcription start site region 51665
Tssr51666 5 88008280 to 88008283 3 - TSS region transcription start site region 51666
Tssr51667 5 88008289 to 88008326 37 - TSS region transcription start site region 51667
Gm7709 5 88062512 to 88064362 1850 + pseudogene predicted gene 7709
Gm42623 5 88070946 to 88071324 378 + pseudogene predicted gene 42623
Smr2 5 88086556 to 88109053 22497 + protein coding gene submaxillary gland androgen regulated protein 2
Gm11116 5 88110567 to 88111530 963 - protein coding gene predicted gene 11116
Gm42622 5 88144704 to 88145058 354 + pseudogene predicted gene 42622
Gm11115 5 88154023 to 88154099 76 - protein coding gene predicted gene 11115
Tssr46973 5 88196986 to 88196993 7 + TSS region transcription start site region 46973
Gm42621 5 88196988 to 88201407 4419 + pseudogene predicted gene 42621
Gm42164 5 88210659 to 88211037 378 + pseudogene predicted gene, 42164
Gm7048 5 88231350 to 88233240 1890 + pseudogene predicted gene 7048
Gm7714 5 88268919 to 88282835 13916 + protein coding gene predicted gene 7714
Tssr46974 5 88268923 to 88268934 11 + TSS region transcription start site region 46974
1700041A01Rik 5 88291361 to 88301023 9662 - lncRNA gene RIKEN cDNA 1700041A01 gene
Tssr46975 5 88317077 to 88317086 9 + TSS region transcription start site region 46975
Tssr46976 5 88317287 to 88317306 19 + TSS region transcription start site region 46976
Prol1 5 88317312 to 88328814 11502 + protein coding gene proline rich, lacrimal 1
Tssr46977 5 88318566 to 88318571 5 + TSS region transcription start site region 46977
Tssr46978 5 88318573 to 88318590 17 + TSS region transcription start site region 46978
Tssr46979 5 88327804 to 88327820 16 + TSS region transcription start site region 46979
Tssr46980 5 88327825 to 88327837 12 + TSS region transcription start site region 46980
Tssr46981 5 88327846 to 88327859 13 + TSS region transcription start site region 46981
Tssr46982 5 88327863 to 88327878 15 + TSS region transcription start site region 46982
Tssr46983 5 88327888 to 88327902 14 + TSS region transcription start site region 46983
Tssr46984 5 88327904 to 88327920 16 + TSS region transcription start site region 46984
Tssr46985 5 88327924 to 88327931 7 + TSS region transcription start site region 46985
Tssr46986 5 88327938 to 88328011 73 + TSS region transcription start site region 46986
Tssr51668 5 88328007 to 88328013 6 - TSS region transcription start site region 51668
Tssr46987 5 88328028 to 88328042 14 + TSS region transcription start site region 46987
Tssr51669 5 88328041 to 88328046 5 - TSS region transcription start site region 51669
Tssr46988 5 88328050 to 88328088 38 + TSS region transcription start site region 46988
Tssr51670 5 88328080 to 88328134 54 - TSS region transcription start site region 51670
Tssr46989 5 88328089 to 88328101 12 + TSS region transcription start site region 46989
Tssr46990 5 88328128 to 88328141 13 + TSS region transcription start site region 46990
Tssr46991 5 88328145 to 88328178 33 + TSS region transcription start site region 46991
Tssr51671 5 88328157 to 88328172 15 - TSS region transcription start site region 51671
Tssr1533 5 88328205 to 88328208 3 - TSS region transcription start site region 1533
Tssr46992 5 88328206 to 88328222 16 + TSS region transcription start site region 46992
Tssr46993 5 88328223 to 88328257 34 + TSS region transcription start site region 46993
Tssr1534 5 88328242 to 88328252 10 - TSS region transcription start site region 1534
Tssr51672 5 88328268 to 88328301 33 - TSS region transcription start site region 51672
Tssr46994 5 88328283 to 88328335 52 + TSS region transcription start site region 46994
Tssr51673 5 88328319 to 88328370 51 - TSS region transcription start site region 51673
Tssr46995 5 88328341 to 88328373 32 + TSS region transcription start site region 46995
Tssr51674 5 88328374 to 88328405 31 - TSS region transcription start site region 51674
Tssr46996 5 88328419 to 88328424 5 + TSS region transcription start site region 46996
Tssr51675 5 88328454 to 88328475 21 - TSS region transcription start site region 51675
Tssr51676 5 88328510 to 88328533 23 - TSS region transcription start site region 51676
Tssr51677 5 88328535 to 88328580 45 - TSS region transcription start site region 51677
Amtn 5 88376108 to 88385916 9808 + protein coding gene amelotin
Gm43431 5 88423215 to 88423554 339 + pseudogene predicted gene 43431
Gm7721 5 88427813 to 88428358 545 + pseudogene predicted gene 7721
Tssr46997 5 88455988 to 88455993 5 + TSS region transcription start site region 46997
Ambn 5 88455991 to 88468531 12540 + protein coding gene ameloblastin
D5Mit273.1 5 88472388 to 88472503 115 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 273.1
D5Mit273 5 88472438 to 88472583 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 273
Enam 5 88487975 to 88506049 18074 + protein coding gene enamelin
Jchain 5 88519809 to 88527891 8082 - protein coding gene immunoglobulin joining chain
Tssr46998 5 88520589 to 88520607 18 + TSS region transcription start site region 46998
Tssr51678 5 88521206 to 88521209 3 - TSS region transcription start site region 51678
Tssr46999 5 88521246 to 88521264 18 + TSS region transcription start site region 46999
Tssr51679 5 88522534 to 88522555 21 - TSS region transcription start site region 51679
Tssr51680 5 88526496 to 88526506 10 - TSS region transcription start site region 51680
Tssr51681 5 88526517 to 88526540 23 - TSS region transcription start site region 51681
Tssr51682 5 88527795 to 88527820 25 - TSS region transcription start site region 51682
Tssr51683 5 88527841 to 88527852 11 - TSS region transcription start site region 51683
Tssr47000 5 88531965 to 88531975 10 + TSS region transcription start site region 47000
Gm43432 5 88545036 to 88545156 120 - pseudogene predicted gene 43432
Tssr47001 5 88553774 to 88553780 6 + TSS region transcription start site region 47001
Cpgi16028 5 88553820 to 88555054 1234 CpG island CpG island 16028
Tssr51684 5 88554126 to 88554189 63 - TSS region transcription start site region 51684
Tssr47002 5 88554425 to 88554442 17 + TSS region transcription start site region 47002
Tssr47003 5 88554448 to 88554495 47 + TSS region transcription start site region 47003
Utp3 5 88554483 to 88556083 1600 + protein coding gene UTP3 small subunit processome component
Gm42107 5 88563440 to 88564861 1421 - lncRNA gene predicted gene, 42107
Cpgi16029 5 88564615 to 88566100 1485 CpG island CpG island 16029
Tssr51685 5 88564818 to 88564829 11 - TSS region transcription start site region 51685
Tssr51686 5 88564833 to 88564905 72 - TSS region transcription start site region 51686
Tssr47004 5 88564982 to 88565005 23 + TSS region transcription start site region 47004
Tssr47005 5 88565009 to 88565058 49 + TSS region transcription start site region 47005
Rufy3 5 88565040 to 88651392 86352 + protein coding gene RUN and FYVE domain containing 3
Tssr47006 5 88565314 to 88565337 23 + TSS region transcription start site region 47006
Tssr51687 5 88565554 to 88565561 7 - TSS region transcription start site region 51687
Tssr47007 5 88568470 to 88568474 4 + TSS region transcription start site region 47007
Tssr47008 5 88581419 to 88581426 7 + TSS region transcription start site region 47008
Tssr47009 5 88581474 to 88581487 13 + TSS region transcription start site region 47009
Tssr47010 5 88583469 to 88583484 15 + TSS region transcription start site region 47010
Tssr47011 5 88583507 to 88583523 16 + TSS region transcription start site region 47011
Tssr47012 5 88583527 to 88583590 63 + TSS region transcription start site region 47012
Tssr47013 5 88583591 to 88583602 11 + TSS region transcription start site region 47013
Tssr47014 5 88583603 to 88583606 3 + TSS region transcription start site region 47014
Tssr47015 5 88583999 to 88584005 6 + TSS region transcription start site region 47015
Tssr47016 5 88584175 to 88584200 25 + TSS region transcription start site region 47016
Tssr47017 5 88584213 to 88584230 17 + TSS region transcription start site region 47017
Tssr47018 5 88593678 to 88593713 35 + TSS region transcription start site region 47018
Tssr47019 5 88650702 to 88650713 11 + TSS region transcription start site region 47019
Tssr47020 5 88650745 to 88650749 4 + TSS region transcription start site region 47020
Tssr47021 5 88657435 to 88657479 44 + TSS region transcription start site region 47021
Grsf1 5 88659448 to 88676171 16723 - protein coding gene G-rich RNA sequence binding factor 1
Tssr51688 5 88670206 to 88670256 50 - TSS region transcription start site region 51688
Cpgi16030 5 88674892 to 88676490 1598 CpG island CpG island 16030
Tssr51689 5 88675190 to 88675227 37 - TSS region transcription start site region 51689
Tssr51690 5 88675542 to 88675563 21 - TSS region transcription start site region 51690
Tssr51691 5 88675565 to 88675592 27 - TSS region transcription start site region 51691
Tssr51692 5 88675613 to 88675655 42 - TSS region transcription start site region 51692
Tssr51693 5 88676111 to 88676129 18 - TSS region transcription start site region 51693
Tssr51694 5 88676135 to 88676186 51 - TSS region transcription start site region 51694
Tssr51695 5 88676192 to 88676209 17 - TSS region transcription start site region 51695
Tssr51696 5 88676226 to 88676237 11 - TSS region transcription start site region 51696