Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:87876556-88319053

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr46933 5 87885004 to 87885018 14 + TSS region transcription start site region 46933
Odam 5 87885029 to 87894174 9145 + protein coding gene odontogenic, ameloblast asssociated
Tssr46934 5 87887475 to 87887490 15 + TSS region transcription start site region 46934
Tssr46935 5 87887491 to 87887520 29 + TSS region transcription start site region 46935
Tssr46936 5 87887524 to 87887531 7 + TSS region transcription start site region 46936
1700066N21Rik 5 87908588 to 87979351 70763 - antisense lncRNA gene RIKEN cDNA 1700066N21 gene
Tssr46937 5 87908758 to 87908777 19 + TSS region transcription start site region 46937
BC037156 5 87908779 to 87914171 5392 + lincRNA gene cDNA sequence BC037156
Csn3 5 87925575 to 87932545 6970 + protein coding gene casein kappa
Tssr46938 5 87925594 to 87925621 27 + TSS region transcription start site region 46938
Tssr46939 5 87925624 to 87925639 15 + TSS region transcription start site region 46939
Tssr46940 5 87927031 to 87927049 18 + TSS region transcription start site region 46940
Tssr46941 5 87927570 to 87927591 21 + TSS region transcription start site region 46941
Tssr46942 5 87928261 to 87928274 13 + TSS region transcription start site region 46942
Tssr46943 5 87929728 to 87929739 11 + TSS region transcription start site region 46943
Tssr46944 5 87929756 to 87929774 18 + TSS region transcription start site region 46944
Tssr46945 5 87929778 to 87929795 17 + TSS region transcription start site region 46945
Tssr46946 5 87929800 to 87929803 3 + TSS region transcription start site region 46946
Tssr46947 5 87929810 to 87929815 5 + TSS region transcription start site region 46947
Tssr46948 5 87929829 to 87929849 20 + TSS region transcription start site region 46948
Tssr46949 5 87929853 to 87929865 12 + TSS region transcription start site region 46949
Tssr51656 5 87929864 to 87929886 22 - TSS region transcription start site region 51656
Tssr46950 5 87929868 to 87929872 4 + TSS region transcription start site region 46950
Tssr46951 5 87929874 to 87929878 4 + TSS region transcription start site region 46951
Tssr46952 5 87929885 to 87929906 21 + TSS region transcription start site region 46952
Tssr46953 5 87929909 to 87929916 7 + TSS region transcription start site region 46953
Tssr46954 5 87929922 to 87929948 26 + TSS region transcription start site region 46954
Tssr46955 5 87929958 to 87929961 3 + TSS region transcription start site region 46955
Tssr51657 5 87929963 to 87929974 11 - TSS region transcription start site region 51657
Tssr51658 5 87929976 to 87929980 4 - TSS region transcription start site region 51658
Tssr51659 5 87929984 to 87929989 5 - TSS region transcription start site region 51659
Tssr51660 5 87930029 to 87930058 29 - TSS region transcription start site region 51660
Tssr51661 5 87930088 to 87930108 20 - TSS region transcription start site region 51661
Tssr46956 5 87932393 to 87932398 5 + TSS region transcription start site region 46956
Tssr46957 5 87932445 to 87932454 9 + TSS region transcription start site region 46957
Tssr46958 5 87956252 to 87956272 20 + TSS region transcription start site region 46958
Tssr46959 5 87956273 to 87956315 42 + TSS region transcription start site region 46959
Tssr46960 5 87963273 to 87963276 3 + TSS region transcription start site region 46960
Tssr1532 5 87963334 to 87963335 1 + TSS region transcription start site region 1532
BC051076 5 87963485 to 87966352 2867 + antisense lncRNA gene cDNA sequence BC051076
Tssr46961 5 87964400 to 87964407 7 + TSS region transcription start site region 46961
Tssr46962 5 87969455 to 87969461 6 + TSS region transcription start site region 46962
2310003L06Rik 5 87969459 to 87972870 3411 + protein coding gene RIKEN cDNA 2310003L06 gene
Gm28434 5 87969517 to 88008277 38760 + protein coding gene predicted gene 28434
Tssr46963 5 87979432 to 87979458 26 + TSS region transcription start site region 46963
Cabs1 5 87979451 to 87981541 2090 + protein coding gene calcium binding protein, spermatid specific 1
Tssr46964 5 87979470 to 87979477 7 + TSS region transcription start site region 46964
Tssr46965 5 88002486 to 88002497 11 + TSS region transcription start site region 46965
Tssr46966 5 88002530 to 88002552 22 + TSS region transcription start site region 46966
Smr3a 5 88002549 to 88008534 5985 + protein coding gene submaxillary gland androgen regulated protein 3A
Tssr46967 5 88002555 to 88002564 9 + TSS region transcription start site region 46967
Tssr46968 5 88002579 to 88002583 4 + TSS region transcription start site region 46968
Tssr46969 5 88008045 to 88008054 9 + TSS region transcription start site region 46969
Tssr46970 5 88008069 to 88008097 28 + TSS region transcription start site region 46970
Tssr51662 5 88008076 to 88008080 4 - TSS region transcription start site region 51662
Tssr51663 5 88008107 to 88008125 18 - TSS region transcription start site region 51663
Tssr46971 5 88008119 to 88008122 3 + TSS region transcription start site region 46971
Tssr46972 5 88008185 to 88008207 22 + TSS region transcription start site region 46972
Tssr51664 5 88008224 to 88008229 5 - TSS region transcription start site region 51664
Tssr51665 5 88008250 to 88008279 29 - TSS region transcription start site region 51665
Tssr51666 5 88008280 to 88008283 3 - TSS region transcription start site region 51666
Tssr51667 5 88008289 to 88008326 37 - TSS region transcription start site region 51667
Gm7709 5 88062512 to 88064362 1850 + pseudogene predicted gene 7709
Gm42623 5 88070946 to 88071324 378 + pseudogene predicted gene 42623
Smr2 5 88086556 to 88109053 22497 + protein coding gene submaxillary gland androgen regulated protein 2
Gm11116 5 88110567 to 88111530 963 - protein coding gene predicted gene 11116
Gm42622 5 88144704 to 88145058 354 + pseudogene predicted gene 42622
Gm11115 5 88154023 to 88154099 76 - protein coding gene predicted gene 11115
Tssr46973 5 88196986 to 88196993 7 + TSS region transcription start site region 46973
Gm42621 5 88196988 to 88201407 4419 + pseudogene predicted gene 42621
Gm42164 5 88210659 to 88211037 378 + pseudogene predicted gene, 42164
Gm7048 5 88231350 to 88233240 1890 + pseudogene predicted gene 7048
Gm7714 5 88268919 to 88282835 13916 + protein coding gene predicted gene 7714
Tssr46974 5 88268923 to 88268934 11 + TSS region transcription start site region 46974
1700041A01Rik 5 88291361 to 88301023 9662 - lncRNA gene RIKEN cDNA 1700041A01 gene
Tssr46975 5 88317077 to 88317086 9 + TSS region transcription start site region 46975
Tssr46976 5 88317287 to 88317306 19 + TSS region transcription start site region 46976
Prol1 5 88317312 to 88328814 11502 + protein coding gene proline rich, lacrimal 1
Tssr46977 5 88318566 to 88318571 5 + TSS region transcription start site region 46977
Tssr46978 5 88318573 to 88318590 17 + TSS region transcription start site region 46978