Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:87785029-87994174

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Csn1s2a 5 87774567 to 87788797 14230 + protein coding gene casein alpha s2-like A
Tssr46918 5 87785275 to 87785289 14 + TSS region transcription start site region 46918
Tssr51649 5 87785306 to 87785322 16 - TSS region transcription start site region 51649
Tssr46919 5 87786582 to 87786603 21 + TSS region transcription start site region 46919
Tssr46920 5 87786607 to 87786637 30 + TSS region transcription start site region 46920
Tssr51650 5 87786625 to 87786633 8 - TSS region transcription start site region 51650
Tssr46921 5 87786638 to 87786649 11 + TSS region transcription start site region 46921
Tssr1531 5 87786641 to 87786647 6 - TSS region transcription start site region 1531
Tssr46922 5 87786651 to 87786654 3 + TSS region transcription start site region 46922
Tssr51651 5 87786655 to 87786689 34 - TSS region transcription start site region 51651
Tssr46923 5 87786675 to 87786680 5 + TSS region transcription start site region 46923
Tssr46924 5 87788544 to 87788561 17 + TSS region transcription start site region 46924
Tssr51652 5 87788617 to 87788621 4 - TSS region transcription start site region 51652
Tssr51653 5 87788624 to 87788637 13 - TSS region transcription start site region 51653
Tssr46925 5 87788698 to 87788708 10 + TSS region transcription start site region 46925
Tssr46926 5 87788732 to 87788747 15 + TSS region transcription start site region 46926
Tssr46927 5 87788758 to 87788768 10 + TSS region transcription start site region 46927
Tssr46928 5 87808114 to 87808115 1 + TSS region transcription start site region 46928
Tssr46929 5 87808117 to 87808128 11 + TSS region transcription start site region 46929
Csn1s2b 5 87808121 to 87824421 16300 + protein coding gene casein alpha s2-like B
Tssr46930 5 87811350 to 87811353 3 + TSS region transcription start site region 46930
Tssr46931 5 87825675 to 87825754 79 + TSS region transcription start site region 46931
Prr27 5 87825697 to 87846386 20689 + protein coding gene proline rich 27
Tssr46932 5 87825759 to 87825771 12 + TSS region transcription start site region 46932
Gm42794 5 87839889 to 87843418 3529 - antisense lncRNA gene predicted gene 42794
Tssr51654 5 87843407 to 87843410 3 - TSS region transcription start site region 51654
Tssr51655 5 87843434 to 87843459 25 - TSS region transcription start site region 51655
Gm7337 5 87850359 to 87853012 2653 + pseudogene predicted gene 7337
Tssr46933 5 87885004 to 87885018 14 + TSS region transcription start site region 46933
Odam 5 87885029 to 87894174 9145 + protein coding gene odontogenic, ameloblast asssociated
Tssr46934 5 87887475 to 87887490 15 + TSS region transcription start site region 46934
Tssr46935 5 87887491 to 87887520 29 + TSS region transcription start site region 46935
Tssr46936 5 87887524 to 87887531 7 + TSS region transcription start site region 46936
1700066N21Rik 5 87908588 to 87979351 70763 - antisense lncRNA gene RIKEN cDNA 1700066N21 gene
Tssr46937 5 87908758 to 87908777 19 + TSS region transcription start site region 46937
BC037156 5 87908779 to 87914171 5392 + lincRNA gene cDNA sequence BC037156
Csn3 5 87925575 to 87932545 6970 + protein coding gene casein kappa
Tssr46938 5 87925594 to 87925621 27 + TSS region transcription start site region 46938
Tssr46939 5 87925624 to 87925639 15 + TSS region transcription start site region 46939
Tssr46940 5 87927031 to 87927049 18 + TSS region transcription start site region 46940
Tssr46941 5 87927570 to 87927591 21 + TSS region transcription start site region 46941
Tssr46942 5 87928261 to 87928274 13 + TSS region transcription start site region 46942
Tssr46943 5 87929728 to 87929739 11 + TSS region transcription start site region 46943
Tssr46944 5 87929756 to 87929774 18 + TSS region transcription start site region 46944
Tssr46945 5 87929778 to 87929795 17 + TSS region transcription start site region 46945
Tssr46946 5 87929800 to 87929803 3 + TSS region transcription start site region 46946
Tssr46947 5 87929810 to 87929815 5 + TSS region transcription start site region 46947
Tssr46948 5 87929829 to 87929849 20 + TSS region transcription start site region 46948
Tssr46949 5 87929853 to 87929865 12 + TSS region transcription start site region 46949
Tssr51656 5 87929864 to 87929886 22 - TSS region transcription start site region 51656
Tssr46950 5 87929868 to 87929872 4 + TSS region transcription start site region 46950
Tssr46951 5 87929874 to 87929878 4 + TSS region transcription start site region 46951
Tssr46952 5 87929885 to 87929906 21 + TSS region transcription start site region 46952
Tssr46953 5 87929909 to 87929916 7 + TSS region transcription start site region 46953
Tssr46954 5 87929922 to 87929948 26 + TSS region transcription start site region 46954
Tssr46955 5 87929958 to 87929961 3 + TSS region transcription start site region 46955
Tssr51657 5 87929963 to 87929974 11 - TSS region transcription start site region 51657
Tssr51658 5 87929976 to 87929980 4 - TSS region transcription start site region 51658
Tssr51659 5 87929984 to 87929989 5 - TSS region transcription start site region 51659
Tssr51660 5 87930029 to 87930058 29 - TSS region transcription start site region 51660
Tssr51661 5 87930088 to 87930108 20 - TSS region transcription start site region 51661
Tssr46956 5 87932393 to 87932398 5 + TSS region transcription start site region 46956
Tssr46957 5 87932445 to 87932454 9 + TSS region transcription start site region 46957
Tssr46958 5 87956252 to 87956272 20 + TSS region transcription start site region 46958
Tssr46959 5 87956273 to 87956315 42 + TSS region transcription start site region 46959
Tssr46960 5 87963273 to 87963276 3 + TSS region transcription start site region 46960
Tssr1532 5 87963334 to 87963335 1 + TSS region transcription start site region 1532
BC051076 5 87963485 to 87966352 2867 + antisense lncRNA gene cDNA sequence BC051076
Tssr46961 5 87964400 to 87964407 7 + TSS region transcription start site region 46961
Tssr46962 5 87969455 to 87969461 6 + TSS region transcription start site region 46962
2310003L06Rik 5 87969459 to 87972870 3411 + protein coding gene RIKEN cDNA 2310003L06 gene
Gm28434 5 87969517 to 88008277 38760 + protein coding gene predicted gene 28434
Tssr46963 5 87979432 to 87979458 26 + TSS region transcription start site region 46963
Cabs1 5 87979451 to 87981541 2090 + protein coding gene calcium binding protein, spermatid specific 1
Tssr46964 5 87979470 to 87979477 7 + TSS region transcription start site region 46964