Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:87680567-88541530

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248 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Csn1s1 5 87666208 to 87682578 16370 + protein coding gene casein alpha s1
Tssr46879 5 87680808 to 87680826 18 + TSS region transcription start site region 46879
Tssr46880 5 87680844 to 87680869 25 + TSS region transcription start site region 46880
Tssr51611 5 87680888 to 87680899 11 - TSS region transcription start site region 51611
Tssr1527 5 87680890 to 87680897 7 + TSS region transcription start site region 1527
Tssr51612 5 87680939 to 87680944 5 - TSS region transcription start site region 51612
D5Mit337 5 87681787 to 87681909 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 337
Tssr46881 5 87682184 to 87682224 40 + TSS region transcription start site region 46881
Tssr1528 5 87682341 to 87682342 1 + TSS region transcription start site region 1528
Tssr46882 5 87682541 to 87682550 9 + TSS region transcription start site region 46882
Csn2 5 87692619 to 87699429 6810 - protein coding gene casein beta
Tssr51613 5 87692651 to 87692679 28 - TSS region transcription start site region 51613
Tssr51614 5 87692738 to 87692742 4 - TSS region transcription start site region 51614
Tssr51615 5 87692790 to 87692798 8 - TSS region transcription start site region 51615
Tssr51616 5 87692825 to 87692832 7 - TSS region transcription start site region 51616
Tssr51617 5 87692833 to 87692841 8 - TSS region transcription start site region 51617
D5Mit16.2 5 87693666 to 87693863 197 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 16.2
D5Mit12 5 87693862 to 87693978 116 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 12
D5Mit16 5 87693868 to 87694018 150 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 16
D5Mit16.1 5 87693968 to 87694175 207 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 16.1
Sle6 5 87693978 to 8840693 -78853285 QTL systemic lupus erythematosus susceptibility 6
Tssr46883 5 87694501 to 87694511 10 + TSS region transcription start site region 46883
Tssr46884 5 87694514 to 87694526 12 + TSS region transcription start site region 46884
Tssr51618 5 87694530 to 87694540 10 - TSS region transcription start site region 51618
Tssr46885 5 87694542 to 87694547 5 + TSS region transcription start site region 46885
Tssr1529 5 87694554 to 87694561 7 + TSS region transcription start site region 1529
Tssr51619 5 87694568 to 87694574 6 - TSS region transcription start site region 51619
Tssr46886 5 87694570 to 87694577 7 + TSS region transcription start site region 46886
Tssr51620 5 87694577 to 87694584 7 - TSS region transcription start site region 51620
Tssr51621 5 87694586 to 87694603 17 - TSS region transcription start site region 51621
Tssr46887 5 87694587 to 87694594 7 + TSS region transcription start site region 46887
Tssr51622 5 87694624 to 87694639 15 - TSS region transcription start site region 51622
Tssr51623 5 87694649 to 87694655 6 - TSS region transcription start site region 51623
Tssr46888 5 87694656 to 87694700 44 + TSS region transcription start site region 46888
Tssr51624 5 87694667 to 87694672 5 - TSS region transcription start site region 51624
Tssr51625 5 87694673 to 87694682 9 - TSS region transcription start site region 51625
Tssr51626 5 87694683 to 87694694 11 - TSS region transcription start site region 51626
Tssr51627 5 87694698 to 87694720 22 - TSS region transcription start site region 51627
Tssr46889 5 87694705 to 87694719 14 + TSS region transcription start site region 46889
Tssr46890 5 87694720 to 87694752 32 + TSS region transcription start site region 46890
Tssr51628 5 87694739 to 87694830 91 - TSS region transcription start site region 51628
Tssr46891 5 87694764 to 87694765 1 + TSS region transcription start site region 46891
Tssr46892 5 87694768 to 87694794 26 + TSS region transcription start site region 46892
Tssr46893 5 87694796 to 87694820 24 + TSS region transcription start site region 46893
Tssr51629 5 87694831 to 87694924 93 - TSS region transcription start site region 51629
Tssr46894 5 87694843 to 87694865 22 + TSS region transcription start site region 46894
Tssr46895 5 87694866 to 87694885 19 + TSS region transcription start site region 46895
Tssr51630 5 87694925 to 87694972 47 - TSS region transcription start site region 51630
Tssr46896 5 87694961 to 87694964 3 + TSS region transcription start site region 46896
Tssr51631 5 87694974 to 87695011 37 - TSS region transcription start site region 51631
Tssr51632 5 87695268 to 87695270 2 - TSS region transcription start site region 51632
Tssr51633 5 87696053 to 87696074 21 - TSS region transcription start site region 51633
Tssr51634 5 87696175 to 87696179 4 - TSS region transcription start site region 51634
Tssr51635 5 87697139 to 87697146 7 - TSS region transcription start site region 51635
Tssr51636 5 87697165 to 87697170 5 - TSS region transcription start site region 51636
Tssr51637 5 87697278 to 87697298 20 - TSS region transcription start site region 51637
Tssr51638 5 87698054 to 87698056 2 - TSS region transcription start site region 51638
Tssr51639 5 87698061 to 87698092 31 - TSS region transcription start site region 51639
Tssr51640 5 87699398 to 87699400 2 - TSS region transcription start site region 51640
Tssr51641 5 87699414 to 87699427 13 - TSS region transcription start site region 51641
Tssr51642 5 87699447 to 87699448 1 - TSS region transcription start site region 51642
Tssr51643 5 87699469 to 87699477 8 - TSS region transcription start site region 51643
Gm25066 5 87733528 to 87733650 122 + snoRNA gene predicted gene, 25066
Gm42845 5 87737106 to 87737210 104 - pseudogene predicted gene 42845
Gm24314 5 87764679 to 87764801 122 - snoRNA gene predicted gene, 24314
Tssr46897 5 87774552 to 87774573 21 + TSS region transcription start site region 46897
Csn1s2a 5 87774567 to 87788797 14230 + protein coding gene casein alpha s2-like A
Tssr46898 5 87774927 to 87774936 9 + TSS region transcription start site region 46898
Tssr46899 5 87775299 to 87775309 10 + TSS region transcription start site region 46899
Tssr46900 5 87775766 to 87775782 16 + TSS region transcription start site region 46900
Tssr46901 5 87775784 to 87775802 18 + TSS region transcription start site region 46901
Tssr46902 5 87775811 to 87775818 7 + TSS region transcription start site region 46902
Tssr46903 5 87777211 to 87777227 16 + TSS region transcription start site region 46903
Tssr46904 5 87777435 to 87777444 9 + TSS region transcription start site region 46904
Tssr46905 5 87778052 to 87778059 7 + TSS region transcription start site region 46905
Tssr46906 5 87778163 to 87778186 23 + TSS region transcription start site region 46906
Tssr46907 5 87778949 to 87778961 12 + TSS region transcription start site region 46907
Tssr46908 5 87779996 to 87780026 30 + TSS region transcription start site region 46908
Tssr51644 5 87780022 to 87780025 3 - TSS region transcription start site region 51644
Tssr46909 5 87780103 to 87780132 29 + TSS region transcription start site region 46909
Tssr51645 5 87780136 to 87780158 22 - TSS region transcription start site region 51645
Tssr46910 5 87780152 to 87780155 3 + TSS region transcription start site region 46910
Tssr46911 5 87780956 to 87780959 3 + TSS region transcription start site region 46911
Tssr1530 5 87781775 to 87781776 1 + TSS region transcription start site region 1530
Tssr46912 5 87781781 to 87781805 24 + TSS region transcription start site region 46912
Tssr46913 5 87781807 to 87781812 5 + TSS region transcription start site region 46913
Tssr46914 5 87781816 to 87781823 7 + TSS region transcription start site region 46914
Tssr46915 5 87781827 to 87781863 36 + TSS region transcription start site region 46915
Tssr51646 5 87781838 to 87781854 16 - TSS region transcription start site region 51646
Tssr51647 5 87781861 to 87781895 34 - TSS region transcription start site region 51647
Tssr46916 5 87784539 to 87784540 1 + TSS region transcription start site region 46916
Tssr46917 5 87784554 to 87784569 15 + TSS region transcription start site region 46917
Tssr51648 5 87784583 to 87784598 15 - TSS region transcription start site region 51648
Tssr46918 5 87785275 to 87785289 14 + TSS region transcription start site region 46918
Tssr51649 5 87785306 to 87785322 16 - TSS region transcription start site region 51649
Tssr46919 5 87786582 to 87786603 21 + TSS region transcription start site region 46919
Tssr46920 5 87786607 to 87786637 30 + TSS region transcription start site region 46920
Tssr51650 5 87786625 to 87786633 8 - TSS region transcription start site region 51650
Tssr46921 5 87786638 to 87786649 11 + TSS region transcription start site region 46921
Tssr1531 5 87786641 to 87786647 6 - TSS region transcription start site region 1531
Tssr46922 5 87786651 to 87786654 3 + TSS region transcription start site region 46922
Tssr51651 5 87786655 to 87786689 34 - TSS region transcription start site region 51651
Tssr46923 5 87786675 to 87786680 5 + TSS region transcription start site region 46923
Tssr46924 5 87788544 to 87788561 17 + TSS region transcription start site region 46924
Tssr51652 5 87788617 to 87788621 4 - TSS region transcription start site region 51652
Tssr51653 5 87788624 to 87788637 13 - TSS region transcription start site region 51653
Tssr46925 5 87788698 to 87788708 10 + TSS region transcription start site region 46925
Tssr46926 5 87788732 to 87788747 15 + TSS region transcription start site region 46926
Tssr46927 5 87788758 to 87788768 10 + TSS region transcription start site region 46927
Tssr46928 5 87808114 to 87808115 1 + TSS region transcription start site region 46928
Tssr46929 5 87808117 to 87808128 11 + TSS region transcription start site region 46929
Csn1s2b 5 87808121 to 87824421 16300 + protein coding gene casein alpha s2-like B
Tssr46930 5 87811350 to 87811353 3 + TSS region transcription start site region 46930
Tssr46931 5 87825675 to 87825754 79 + TSS region transcription start site region 46931
Prr27 5 87825697 to 87846386 20689 + protein coding gene proline rich 27
Tssr46932 5 87825759 to 87825771 12 + TSS region transcription start site region 46932
Gm42794 5 87839889 to 87843418 3529 - antisense lncRNA gene predicted gene 42794
Tssr51654 5 87843407 to 87843410 3 - TSS region transcription start site region 51654
Tssr51655 5 87843434 to 87843459 25 - TSS region transcription start site region 51655
Gm7337 5 87850359 to 87853012 2653 + pseudogene predicted gene 7337
Tssr46933 5 87885004 to 87885018 14 + TSS region transcription start site region 46933
Odam 5 87885029 to 87894174 9145 + protein coding gene odontogenic, ameloblast asssociated
Tssr46934 5 87887475 to 87887490 15 + TSS region transcription start site region 46934
Tssr46935 5 87887491 to 87887520 29 + TSS region transcription start site region 46935
Tssr46936 5 87887524 to 87887531 7 + TSS region transcription start site region 46936
1700066N21Rik 5 87908588 to 87979351 70763 - antisense lncRNA gene RIKEN cDNA 1700066N21 gene
Tssr46937 5 87908758 to 87908777 19 + TSS region transcription start site region 46937
BC037156 5 87908779 to 87914171 5392 + lincRNA gene cDNA sequence BC037156
Csn3 5 87925575 to 87932545 6970 + protein coding gene casein kappa
Tssr46938 5 87925594 to 87925621 27 + TSS region transcription start site region 46938
Tssr46939 5 87925624 to 87925639 15 + TSS region transcription start site region 46939
Tssr46940 5 87927031 to 87927049 18 + TSS region transcription start site region 46940
Tssr46941 5 87927570 to 87927591 21 + TSS region transcription start site region 46941
Tssr46942 5 87928261 to 87928274 13 + TSS region transcription start site region 46942
Tssr46943 5 87929728 to 87929739 11 + TSS region transcription start site region 46943
Tssr46944 5 87929756 to 87929774 18 + TSS region transcription start site region 46944
Tssr46945 5 87929778 to 87929795 17 + TSS region transcription start site region 46945
Tssr46946 5 87929800 to 87929803 3 + TSS region transcription start site region 46946
Tssr46947 5 87929810 to 87929815 5 + TSS region transcription start site region 46947
Tssr46948 5 87929829 to 87929849 20 + TSS region transcription start site region 46948
Tssr46949 5 87929853 to 87929865 12 + TSS region transcription start site region 46949
Tssr51656 5 87929864 to 87929886 22 - TSS region transcription start site region 51656
Tssr46950 5 87929868 to 87929872 4 + TSS region transcription start site region 46950
Tssr46951 5 87929874 to 87929878 4 + TSS region transcription start site region 46951
Tssr46952 5 87929885 to 87929906 21 + TSS region transcription start site region 46952
Tssr46953 5 87929909 to 87929916 7 + TSS region transcription start site region 46953
Tssr46954 5 87929922 to 87929948 26 + TSS region transcription start site region 46954
Tssr46955 5 87929958 to 87929961 3 + TSS region transcription start site region 46955
Tssr51657 5 87929963 to 87929974 11 - TSS region transcription start site region 51657
Tssr51658 5 87929976 to 87929980 4 - TSS region transcription start site region 51658
Tssr51659 5 87929984 to 87929989 5 - TSS region transcription start site region 51659
Tssr51660 5 87930029 to 87930058 29 - TSS region transcription start site region 51660
Tssr51661 5 87930088 to 87930108 20 - TSS region transcription start site region 51661
Tssr46956 5 87932393 to 87932398 5 + TSS region transcription start site region 46956
Tssr46957 5 87932445 to 87932454 9 + TSS region transcription start site region 46957
Tssr46958 5 87956252 to 87956272 20 + TSS region transcription start site region 46958
Tssr46959 5 87956273 to 87956315 42 + TSS region transcription start site region 46959
Tssr46960 5 87963273 to 87963276 3 + TSS region transcription start site region 46960
Tssr1532 5 87963334 to 87963335 1 + TSS region transcription start site region 1532
BC051076 5 87963485 to 87966352 2867 + antisense lncRNA gene cDNA sequence BC051076
Tssr46961 5 87964400 to 87964407 7 + TSS region transcription start site region 46961
Tssr46962 5 87969455 to 87969461 6 + TSS region transcription start site region 46962
2310003L06Rik 5 87969459 to 87972870 3411 + protein coding gene RIKEN cDNA 2310003L06 gene
Gm28434 5 87969517 to 88008277 38760 + protein coding gene predicted gene 28434
Tssr46963 5 87979432 to 87979458 26 + TSS region transcription start site region 46963
Cabs1 5 87979451 to 87981541 2090 + protein coding gene calcium binding protein, spermatid specific 1
Tssr46964 5 87979470 to 87979477 7 + TSS region transcription start site region 46964
Tssr46965 5 88002486 to 88002497 11 + TSS region transcription start site region 46965
Tssr46966 5 88002530 to 88002552 22 + TSS region transcription start site region 46966
Smr3a 5 88002549 to 88008534 5985 + protein coding gene submaxillary gland androgen regulated protein 3A
Tssr46967 5 88002555 to 88002564 9 + TSS region transcription start site region 46967
Tssr46968 5 88002579 to 88002583 4 + TSS region transcription start site region 46968
Tssr46969 5 88008045 to 88008054 9 + TSS region transcription start site region 46969
Tssr46970 5 88008069 to 88008097 28 + TSS region transcription start site region 46970
Tssr51662 5 88008076 to 88008080 4 - TSS region transcription start site region 51662
Tssr51663 5 88008107 to 88008125 18 - TSS region transcription start site region 51663
Tssr46971 5 88008119 to 88008122 3 + TSS region transcription start site region 46971
Tssr46972 5 88008185 to 88008207 22 + TSS region transcription start site region 46972
Tssr51664 5 88008224 to 88008229 5 - TSS region transcription start site region 51664
Tssr51665 5 88008250 to 88008279 29 - TSS region transcription start site region 51665
Tssr51666 5 88008280 to 88008283 3 - TSS region transcription start site region 51666
Tssr51667 5 88008289 to 88008326 37 - TSS region transcription start site region 51667
Gm7709 5 88062512 to 88064362 1850 + pseudogene predicted gene 7709
Gm42623 5 88070946 to 88071324 378 + pseudogene predicted gene 42623
Smr2 5 88086556 to 88109053 22497 + protein coding gene submaxillary gland androgen regulated protein 2
Gm11116 5 88110567 to 88111530 963 - protein coding gene predicted gene 11116
Gm42622 5 88144704 to 88145058 354 + pseudogene predicted gene 42622
Gm11115 5 88154023 to 88154099 76 - protein coding gene predicted gene 11115
Tssr46973 5 88196986 to 88196993 7 + TSS region transcription start site region 46973
Gm42621 5 88196988 to 88201407 4419 + pseudogene predicted gene 42621
Gm42164 5 88210659 to 88211037 378 + pseudogene predicted gene, 42164
Gm7048 5 88231350 to 88233240 1890 + pseudogene predicted gene 7048
Gm7714 5 88268919 to 88282835 13916 + protein coding gene predicted gene 7714
Tssr46974 5 88268923 to 88268934 11 + TSS region transcription start site region 46974
1700041A01Rik 5 88291361 to 88301023 9662 - lncRNA gene RIKEN cDNA 1700041A01 gene
Tssr46975 5 88317077 to 88317086 9 + TSS region transcription start site region 46975
Tssr46976 5 88317287 to 88317306 19 + TSS region transcription start site region 46976
Prol1 5 88317312 to 88328814 11502 + protein coding gene proline rich, lacrimal 1
Tssr46977 5 88318566 to 88318571 5 + TSS region transcription start site region 46977
Tssr46978 5 88318573 to 88318590 17 + TSS region transcription start site region 46978