Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:86114304-87494319

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Uba6 5 86110720 to 86172743 62023 - protein coding gene ubiquitin-like modifier activating enzyme 6
Tssr51520 5 86159303 to 86159316 13 - TSS region transcription start site region 51520
Cpgi16026 5 86172162 to 86173195 1033 CpG island CpG island 16026
Tssr51521 5 86172747 to 86172793 46 - TSS region transcription start site region 51521
Tssr46844 5 86173038 to 86173052 14 + TSS region transcription start site region 46844
Gnrhr 5 86180754 to 86197901 17147 - protein coding gene gonadotropin releasing hormone receptor
Tssr51522 5 86197847 to 86197856 9 - TSS region transcription start site region 51522
Tssr51523 5 86197881 to 86197895 14 - TSS region transcription start site region 51523
Tssr51524 5 86197925 to 86197935 10 - TSS region transcription start site region 51524
Tmprss11c 5 86231481 to 86289308 57827 - protein coding gene transmembrane protease, serine 11c
Gm25473 5 86236855 to 86236961 106 - snRNA gene predicted gene, 25473
Tmprss11d 5 86302854 to 86373387 70533 - protein coding gene transmembrane protease, serine 11d
Tssr51525 5 86327743 to 86327757 14 - TSS region transcription start site region 51525
Gm35367 5 86344043 to 86396805 52762 + lncRNA gene predicted gene, 35367
Tssr51526 5 86373401 to 86373407 6 - TSS region transcription start site region 51526
Tssr51527 5 86373413 to 86373428 15 - TSS region transcription start site region 51527
Tssr51528 5 86373438 to 86373450 12 - TSS region transcription start site region 51528
Tssr51529 5 86373537 to 86373567 30 - TSS region transcription start site region 51529
Tmprss11a 5 86410410 to 86468990 58580 - protein coding gene transmembrane protease, serine 11a
Tssr51530 5 86469055 to 86469062 7 - TSS region transcription start site region 51530
Tssr51531 5 86469072 to 86469123 51 - TSS region transcription start site region 51531
Tssr51532 5 86469134 to 86469141 7 - TSS region transcription start site region 51532
Tmprss11g 5 86485877 to 86518600 32723 - protein coding gene transmembrane protease, serine 11g
Tssr46845 5 86496131 to 86496135 4 + TSS region transcription start site region 46845
Tssr51533 5 86518549 to 86518561 12 - TSS region transcription start site region 51533
Tssr51534 5 86518562 to 86518577 15 - TSS region transcription start site region 51534
Tssr51535 5 86518578 to 86518610 32 - TSS region transcription start site region 51535
Tssr51536 5 86518616 to 86518627 11 - TSS region transcription start site region 51536
Tssr51537 5 86518677 to 86518690 13 - TSS region transcription start site region 51537
Tmprss11f 5 86521898 to 86632424 110526 - protein coding gene transmembrane protease, serine 11f
Tssr51538 5 86591433 to 86591472 39 - TSS region transcription start site region 51538
Tssr51539 5 86632378 to 86632391 13 - TSS region transcription start site region 51539
Tssr51540 5 86632417 to 86632431 14 - TSS region transcription start site region 51540
Tssr51541 5 86632460 to 86632471 11 - TSS region transcription start site region 51541
Tmprss11b 5 86659522 to 86676298 16776 - protein coding gene transmembrane protease, serine 11B
Tssr51542 5 86676310 to 86676320 10 - TSS region transcription start site region 51542
Tssr51543 5 86676328 to 86676335 7 - TSS region transcription start site region 51543
Tssr51544 5 86676346 to 86676369 23 - TSS region transcription start site region 51544
Gm43056 5 86683850 to 86686640 2790 - lincRNA gene predicted gene 43056
Tmprss11e 5 86705186 to 86745807 40621 - protein coding gene transmembrane protease, serine 11e
Gm16579 5 86728899 to 86759736 30837 + antisense lncRNA gene predicted gene 16579
Gm43055 5 86728906 to 86817106 88200 + lincRNA gene predicted gene 43055
Tssr51545 5 86745787 to 86745812 25 - TSS region transcription start site region 51545
Gm43057 5 86767141 to 86783033 15892 - lincRNA gene predicted gene 43057
Tssr51546 5 86783107 to 86783118 11 - TSS region transcription start site region 51546
Tssr51547 5 86783169 to 86783178 9 - TSS region transcription start site region 51547
Tssr51548 5 86783202 to 86783213 11 - TSS region transcription start site region 51548
Tssr51549 5 86795223 to 86795229 6 - TSS region transcription start site region 51549
Cpgi16027 5 86803911 to 86804927 1016 CpG island CpG island 16027
Tssr51550 5 86803993 to 86804006 13 - TSS region transcription start site region 51550
Tssr46846 5 86804192 to 86804208 16 + TSS region transcription start site region 46846
Tssr46847 5 86804214 to 86804276 62 + TSS region transcription start site region 46847
Ythdc1 5 86804221 to 86836659 32438 + protein coding gene YTH domain containing 1
Tssr46848 5 86804281 to 86804297 16 + TSS region transcription start site region 46848
Tssr46849 5 86804304 to 86804319 15 + TSS region transcription start site region 46849
Tssr46850 5 86804339 to 86804344 5 + TSS region transcription start site region 46850
Tssr46851 5 86804360 to 86804367 7 + TSS region transcription start site region 46851
Tssr46852 5 86804382 to 86804393 11 + TSS region transcription start site region 46852
Tssr46853 5 86804508 to 86804517 9 + TSS region transcription start site region 46853
Tssr51551 5 86804784 to 86804813 29 - TSS region transcription start site region 51551
Tssr46854 5 86816761 to 86816765 4 + TSS region transcription start site region 46854
Tssr46855 5 86833267 to 86833276 9 + TSS region transcription start site region 46855
Gm21461 5 86860657 to 86863506 2849 - pseudogene predicted gene, 21461
Ugt2b34 5 86889770 to 86906937 17167 - protein coding gene UDP glucuronosyltransferase 2 family, polypeptide B34
Tssr51552 5 86890119 to 86890149 30 - TSS region transcription start site region 51552
Tssr51553 5 86890253 to 86890261 8 - TSS region transcription start site region 51553
Tssr51554 5 86890682 to 86890694 12 - TSS region transcription start site region 51554
Tssr51555 5 86891181 to 86891196 15 - TSS region transcription start site region 51555
Tssr46856 5 86903812 to 86903821 9 + TSS region transcription start site region 46856
Tssr46857 5 86903862 to 86903869 7 + TSS region transcription start site region 46857
Tssr51556 5 86906348 to 86906359 11 - TSS region transcription start site region 51556
Tssr51557 5 86906938 to 86906955 17 - TSS region transcription start site region 51557
Gm25211 5 86916216 to 86916322 106 - snRNA gene predicted gene, 25211
Ugt2b1 5 86916639 to 86926503 9864 - protein coding gene UDP glucuronosyltransferase 2 family, polypeptide B1
Tssr51558 5 86916977 to 86916987 10 - TSS region transcription start site region 51558
Tssr1521 5 86916999 to 86917004 5 - TSS region transcription start site region 1521
Tssr51559 5 86917030 to 86917035 5 - TSS region transcription start site region 51559
Tssr51560 5 86917040 to 86917044 4 - TSS region transcription start site region 51560
Tssr51561 5 86917281 to 86917293 12 - TSS region transcription start site region 51561
Tssr51562 5 86917315 to 86917328 13 - TSS region transcription start site region 51562
Tssr51563 5 86917467 to 86917483 16 - TSS region transcription start site region 51563
Tssr1522 5 86926508 to 86926520 12 - TSS region transcription start site region 1522
Tssr51564 5 86926521 to 86926537 16 - TSS region transcription start site region 51564
Gm24121 5 86928903 to 86929008 105 - snRNA gene predicted gene, 24121
Gm20121 5 86960121 to 86961714 1593 - pseudogene predicted gene, 20121
Gm7631 5 86976820 to 86991777 14957 + pseudogene predicted gene 7631
Tssr46858 5 86997089 to 86997099 10 + TSS region transcription start site region 46858
Gm5869 5 86997159 to 86998415 1256 + pseudogene predicted gene 5869
Tssr46859 5 87000838 to 87000884 46 + TSS region transcription start site region 46859
Ugt2b35 5 87000860 to 87013274 12414 + protein coding gene UDP glucuronosyltransferase 2 family, polypeptide B35
Tssr46860 5 87010192 to 87010203 11 + TSS region transcription start site region 46860
Gm18635 5 87014151 to 87014929 778 + pseudogene predicted gene, 18635
Gm42465 5 87054603 to 87055665 1062 - pseudogene predicted gene 42465
Ugt2b36 5 87065927 to 87092555 26628 - protein coding gene UDP glucuronosyltransferase 2 family, polypeptide B36
Tssr51565 5 87091150 to 87091178 28 - TSS region transcription start site region 51565
Tssr51566 5 87091984 to 87091987 3 - TSS region transcription start site region 51566
Tssr51567 5 87092007 to 87092022 15 - TSS region transcription start site region 51567
Tssr51568 5 87092034 to 87092041 7 - TSS region transcription start site region 51568
Tssr51569 5 87092074 to 87092087 13 - TSS region transcription start site region 51569
Tssr51570 5 87092535 to 87092542 7 - TSS region transcription start site region 51570
Tssr51571 5 87092548 to 87092563 15 - TSS region transcription start site region 51571
Gm31230 5 87097182 to 87100395 3213 - pseudogene predicted gene, 31230
Gm42795 5 87114534 to 87114609 75 - pseudogene predicted gene 42795
Ugt2b5 5 87124960 to 87140318 15358 - protein coding gene UDP glucuronosyltransferase 2 family, polypeptide B5
Tssr51572 5 87127856 to 87127858 2 - TSS region transcription start site region 51572
Tssr51573 5 87140329 to 87140352 23 - TSS region transcription start site region 51573
Gm5717 5 87162277 to 87175278 13001 - pseudogene predicted gene 5717
Gm43369 5 87191622 to 87193173 1551 - pseudogene predicted gene 43369
Gm19418 5 87207117 to 87218111 10994 - pseudogene predicted gene, 19418
Ugt2b37 5 87240492 to 87254788 14296 - protein coding gene UDP glucuronosyltransferase 2 family, polypeptide B37
Tssr1523 5 87254800 to 87254818 18 - TSS region transcription start site region 1523
Gm7646 5 87290179 to 87311817 21638 - pseudogene predicted gene 7646
Tssr51574 5 87296266 to 87296267 1 - TSS region transcription start site region 51574
Ugt2a3 5 87324972 to 87337195 12223 - protein coding gene UDP glucuronosyltransferase 2 family, polypeptide A3
Tssr51575 5 87336497 to 87336526 29 - TSS region transcription start site region 51575
Tssr51576 5 87336552 to 87336563 11 - TSS region transcription start site region 51576
Tssr51577 5 87336676 to 87336686 10 - TSS region transcription start site region 51577
Tssr51578 5 87337119 to 87337131 12 - TSS region transcription start site region 51578
Tssr51579 5 87337136 to 87337139 3 - TSS region transcription start site region 51579
Tssr51580 5 87337165 to 87337203 38 - TSS region transcription start site region 51580
Gm7652 5 87351480 to 87364818 13338 - pseudogene predicted gene 7652
Gm42796 5 87355835 to 87356921 1086 + unclassified gene predicted gene 42796
Gm35570 5 87369803 to 87370483 680 - pseudogene predicted gene, 35570
Gm21049 5 87376158 to 87379920 3762 - pseudogene predicted gene, 21049
D5Mit260 5 87377012 to 87377132 120 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 260
Tssr51581 5 87379949 to 87379954 5 - TSS region transcription start site region 51581
Gm2439 5 87392058 to 87400371 8313 - pseudogene predicted gene 2439
Gm43370 5 87401319 to 87402978 1659 - pseudogene predicted gene 43370
Ugt2b38 5 87409942 to 87424203 14261 - protein coding gene UDP glucuronosyltransferase 2 family, polypeptide B38
Tssr51582 5 87424201 to 87424205 4 - TSS region transcription start site region 51582
Ugt2a1 5 87459490 to 87490871 31381 - protein coding gene UDP glucuronosyltransferase 2 family, polypeptide A1
Ugt2a2 5 87459493 to 87482258 22765 - protein coding gene UDP glucuronosyltransferase 2 family, polypeptide A2
Gm43638 5 87460240 to 87486806 26566 - protein coding gene predicted gene 43638
Tssr51583 5 87482278 to 87482283 5 - TSS region transcription start site region 51583
Tssr51584 5 87490869 to 87490875 6 - TSS region transcription start site region 51584