Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:8520541-10690170

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145 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rundc3b 5 8490334 to 8622952 132618 - protein coding gene RUN domain containing 3B
Tssr45118 5 8567093 to 8567110 17 + TSS region transcription start site region 45118
Tssr45119 5 8567113 to 8567123 10 + TSS region transcription start site region 45119
Tssr45120 5 8606564 to 8606568 4 + TSS region transcription start site region 45120
Cpgi15534 5 8622087 to 8623568 1481 CpG island CpG island 15534
Tssr50089 5 8622768 to 8622854 86 - TSS region transcription start site region 50089
Tssr50090 5 8622855 to 8622921 66 - TSS region transcription start site region 50090
Tssr50091 5 8622951 to 8622970 19 - TSS region transcription start site region 50091
Tssr50092 5 8622984 to 8622998 14 - TSS region transcription start site region 50092
Tssr50093 5 8623004 to 8623051 47 - TSS region transcription start site region 50093
Tssr45121 5 8659958 to 8659960 2 + TSS region transcription start site region 45121
Tssr45122 5 8660021 to 8660028 7 + TSS region transcription start site region 45122
Tssr45123 5 8660040 to 8660047 7 + TSS region transcription start site region 45123
Tssr45124 5 8660059 to 8660099 40 + TSS region transcription start site region 45124
Abcb1a 5 8660077 to 8748575 88498 + protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 1A
Cpgi15535 5 8660191 to 8660586 395 CpG island CpG island 15535
Tssr45125 5 8660605 to 8660623 18 + TSS region transcription start site region 45125
Tssr45126 5 8660633 to 8660652 19 + TSS region transcription start site region 45126
Gm42684 5 8669520 to 8673134 3614 + unclassified gene predicted gene 42684
Gm31157 5 8692556 to 8695776 3220 - lncRNA gene predicted gene, 31157
Tssr45127 5 8728205 to 8728209 4 + TSS region transcription start site region 45127
Gm42686 5 8731661 to 8735768 4107 - unclassified gene predicted gene 42686
Gm5106 5 8781186 to 8798729 17543 - antisense lncRNA gene predicted gene 5106
D5Mit48 5 8797672 to 8797875 203 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 48
Cpgi15536 5 8798076 to 8798718 642 CpG island CpG island 15536
Tssr45128 5 8798139 to 8798164 25 + TSS region transcription start site region 45128
Abcb1b 5 8798147 to 8866314 68167 + protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 1B
Tssr45129 5 8798644 to 8798654 10 + TSS region transcription start site region 45129
Tssr45130 5 8798677 to 8798684 7 + TSS region transcription start site region 45130
Tssr45131 5 8799777 to 8799780 3 + TSS region transcription start site region 45131
Tssr45132 5 8808095 to 8808106 11 + TSS region transcription start site region 45132
7330423F06Rik 5 8831147 to 8831447 300 + unclassified gene RIKEN cDNA 7330423F06 gene
Tssr45133 5 8833458 to 8833460 2 + TSS region transcription start site region 45133
D5Mit146 5 8840693 to 8840817 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 146
D5Mit47 5 8865949 to 8866062 113 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 47
Cpgi15537 5 8893334 to 8894242 908 CpG island CpG island 15537
Tssr45134 5 8893568 to 8893580 12 + TSS region transcription start site region 45134
Tssr45135 5 8893606 to 8893617 11 + TSS region transcription start site region 45135
Tssr45136 5 8893677 to 8893745 68 + TSS region transcription start site region 45136
Abcb4 5 8893717 to 8959231 65514 + protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 4
Tssr45137 5 8893829 to 8893840 11 + TSS region transcription start site region 45137
Tssr45138 5 8893856 to 8893896 40 + TSS region transcription start site region 45138
Tssr45139 5 8893900 to 8893911 11 + TSS region transcription start site region 45139
Tssr45140 5 8893913 to 8893916 3 + TSS region transcription start site region 45140
Tssr45141 5 8893923 to 8893932 9 + TSS region transcription start site region 45141
Tssr45142 5 8893943 to 8893954 11 + TSS region transcription start site region 45142
Cpgi15538 5 8912750 to 8913110 360 CpG island CpG island 15538
Tssr45143 5 8912759 to 8912763 4 + TSS region transcription start site region 45143
Gm17936 5 8912974 to 8913954 980 + pseudogene predicted gene, 17936
Gm31388 5 8936829 to 8944505 7676 - lncRNA gene predicted gene, 31388
Tssr45144 5 8957179 to 8957183 4 + TSS region transcription start site region 45144
Crot 5 8966033 to 8997146 31113 - protein coding gene carnitine O-octanoyltransferase
Tssr45145 5 8971911 to 8971920 9 + TSS region transcription start site region 45145
Gm15610 5 8971948 to 8972142 194 + pseudogene predicted gene 15610
Tssr50094 5 8995739 to 8995744 5 - TSS region transcription start site region 50094
Tssr50095 5 8996618 to 8996632 14 - TSS region transcription start site region 50095
Tssr50096 5 8996642 to 8996647 5 - TSS region transcription start site region 50096
Tssr50097 5 8996655 to 8996667 12 - TSS region transcription start site region 50097
Cpgi15539 5 8996841 to 8997573 732 CpG island CpG island 15539
Tssr50098 5 8996902 to 8996922 20 - TSS region transcription start site region 50098
Tssr50099 5 8996998 to 8997038 40 - TSS region transcription start site region 50099
Tssr50100 5 8997089 to 8997093 4 - TSS region transcription start site region 50100
Tssr50101 5 8997138 to 8997161 23 - TSS region transcription start site region 50101
Gm37153 5 8997159 to 8997389 230 + unclassified gene predicted gene, 37153
Tssr50102 5 8997165 to 8997172 7 - TSS region transcription start site region 50102
Gm27941 5 8997286 to 8997427 141 - unclassified non-coding RNA gene predicted gene, 27941
Gm15611 5 8998402 to 8999669 1267 - lincRNA gene predicted gene 15611
Gm40264 5 9034746 to 9038592 3846 + lincRNA gene predicted gene, 40264
Gm31449 5 9073427 to 9089632 16205 + lncRNA gene predicted gene, 31449
Tssr45146 5 9073720 to 9073729 9 + TSS region transcription start site region 45146
Cpgi15540 5 9100301 to 9101729 1428 CpG island CpG island 15540
Tssr45147 5 9100656 to 9100667 11 + TSS region transcription start site region 45147
Tssr45148 5 9100681 to 9100778 97 + TSS region transcription start site region 45148
Tmem243 5 9100737 to 9118983 18246 + protein coding gene transmembrane protein 243, mitochondrial
Tssr45149 5 9101088 to 9101107 19 + TSS region transcription start site region 45149
Tssr45150 5 9101202 to 9101232 30 + TSS region transcription start site region 45150
Tssr45151 5 9101236 to 9101302 66 + TSS region transcription start site region 45151
Tssr45152 5 9101319 to 9101345 26 + TSS region transcription start site region 45152
Tssr45153 5 9104822 to 9104827 5 + TSS region transcription start site region 45153
Tssr45154 5 9113245 to 9113262 17 + TSS region transcription start site region 45154
Tssr45155 5 9113264 to 9113282 18 + TSS region transcription start site region 45155
Tssr45156 5 9118578 to 9118595 17 + TSS region transcription start site region 45156
Tssr45157 5 9118713 to 9118733 20 + TSS region transcription start site region 45157
Tssr45158 5 9118838 to 9118843 5 + TSS region transcription start site region 45158
Dmtf1 5 9118868 to 9161776 42908 - protein coding gene cyclin D binding myb-like transcription factor 1
Tssr50103 5 9145938 to 9145961 23 - TSS region transcription start site region 50103
Gm46901 5 9158512 to 9161606 3094 - protein coding gene predicted gene, 46901
Tssr50104 5 9160908 to 9160912 4 - TSS region transcription start site region 50104
Cpgi15541 5 9160953 to 9162109 1156 CpG island CpG island 15541
Tssr50105 5 9161608 to 9161619 11 - TSS region transcription start site region 50105
Tssr50106 5 9161692 to 9161762 70 - TSS region transcription start site region 50106
Tssr45159 5 9161833 to 9161873 40 + TSS region transcription start site region 45159
Tssr45160 5 9161879 to 9161893 14 + TSS region transcription start site region 45160
Gm24666 5 9169063 to 9169229 166 + snRNA gene predicted gene, 24666
Gm7332 5 9260935 to 9261388 453 - pseudogene predicted gene 7332
Gm15734 5 9264222 to 9266022 1800 - lincRNA gene predicted gene 15734
Cpgi15542 5 9265810 to 9266621 811 CpG island CpG island 15542
Tssr45161 5 9266097 to 9266202 105 + TSS region transcription start site region 45161
9330182L06Rik 5 9266123 to 9481827 215704 + protein coding gene RIKEN cDNA 9330182L06 gene
Tssr45162 5 9295401 to 9295409 8 + TSS region transcription start site region 45162
Tssr50107 5 9300102 to 9300109 7 - TSS region transcription start site region 50107
Tssr50108 5 9300110 to 9300118 8 - TSS region transcription start site region 50108
Tssr50109 5 9300124 to 9300138 14 - TSS region transcription start site region 50109
Tssr50110 5 9300139 to 9300144 5 - TSS region transcription start site region 50110
Gm15733 5 9353759 to 9354000 241 + pseudogene predicted gene 15733
Mir879 5 9375704 to 9375779 75 + miRNA gene microRNA 879
Tssr50111 5 9480933 to 9480945 12 - TSS region transcription start site region 50111
Grm3 5 9485541 to 9725170 239629 - protein coding gene glutamate receptor, metabotropic 3
Tssr50112 5 9485641 to 9485645 4 - TSS region transcription start site region 50112
Cpgi15543 5 9570188 to 9570716 528 CpG island CpG island 15543
Gm42455 5 9599872 to 9602607 2735 - unclassified gene predicted gene 42455
Cpgi15544 5 9724918 to 9725375 457 CpG island CpG island 15544
Tssr50113 5 9725151 to 9725163 12 - TSS region transcription start site region 50113
Tssr50114 5 9725229 to 9725248 19 - TSS region transcription start site region 50114
Tssr50115 5 9725253 to 9725265 12 - TSS region transcription start site region 50115
Tssr50116 5 9725277 to 9725297 20 - TSS region transcription start site region 50116
Tssr50117 5 9725305 to 9725345 40 - TSS region transcription start site region 50117
Tssr50118 5 9725404 to 9725468 64 - TSS region transcription start site region 50118
Tssr50119 5 9725472 to 9725483 11 - TSS region transcription start site region 50119
Tssr50120 5 9725794 to 9725862 68 - TSS region transcription start site region 50120
Cpgi15545 5 9725840 to 9726155 315 CpG island CpG island 15545
Gm23312 5 9758839 to 9758940 101 - snRNA gene predicted gene, 23312
Gm35139 5 9768991 to 9769317 326 - pseudogene predicted gene, 35139
Gm35212 5 9779405 to 9780368 963 + pseudogene predicted gene, 35212
D5Mit178 5 9834048 to 9834340 292 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 178
Gm42832 5 9968674 to 9969418 744 + pseudogene predicted gene 42832
Gm6586 5 10067365 to 10070678 3313 + pseudogene predicted gene 6586
Gm5715 5 10116583 to 10118047 1464 + pseudogene predicted gene 5715
D5Mit248 5 10165764 to 10165889 125 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 248
D5Mit248.2 5 10165827 to 10165937 110 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 248.2
Gm10482 5 10187866 to 10237890 50024 + lincRNA gene predicted gene 10482
Tssr45163 5 10233954 to 10233960 6 + TSS region transcription start site region 45163
Gm28685 5 10235871 to 10236971 1100 - pseudogene predicted gene 28685
Gm5152 5 10242041 to 10246526 4485 - protein coding gene predicted gene 5152
Gm3313 5 10251073 to 10255489 4416 - pseudogene predicted gene 3313
Gm31831 5 10302386 to 10355144 52758 + lincRNA gene predicted gene, 31831
Tssr45164 5 10460397 to 10460398 1 + TSS region transcription start site region 45164
Gm17091 5 10537285 to 10539532 2247 + pseudogene predicted gene 17091
Gm4959 5 10558353 to 10559396 1043 + pseudogene predicted gene 4959
D5Mit70 5 10560429 to 10560548 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 70
Cpgi15546 5 10634921 to 10635114 193 CpG island CpG island 15546
Gm42828 5 10668075 to 10668543 468 - pseudogene predicted gene 42828
Mom5 5 33318293 to 8797672 -24520621 QTL modifier of Min 5
Kdnw1 5 40372526 to 8865949 -31506577 QTL kidney weight 1
Sle6 5 87693978 to 8840693 -78853285 QTL systemic lupus erythematosus susceptibility 6