Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:81248145-85385195

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Adgrl3 5 81020138 to 81825133 804995 + protein coding gene adhesion G protein-coupled receptor L3
Gm43594 5 81249249 to 81252690 3441 + unclassified gene predicted gene 43594
Cpgi16019 5 81329731 to 81329965 234 CpG island CpG island 16019
Tssr46812 5 81418114 to 81418119 5 + TSS region transcription start site region 46812
Tssr46813 5 81420068 to 81420070 2 + TSS region transcription start site region 46813
Tssr46814 5 81461240 to 81461250 10 + TSS region transcription start site region 46814
Tssr46815 5 81512827 to 81512832 5 + TSS region transcription start site region 46815
A230055J12Rik 5 81514027 to 81518139 4112 unclassified non-coding RNA gene RIKEN cDNA A230055J12 gene
D5Mit236 5 81525572 to 81525760 188 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 236
Gm43084 5 81535726 to 81536672 946 + unclassified gene predicted gene 43084
Tssr51485 5 81556063 to 81556076 13 - TSS region transcription start site region 51485
Tssr46816 5 81556347 to 81556362 15 + TSS region transcription start site region 46816
Tssr46817 5 81571578 to 81571582 4 + TSS region transcription start site region 46817
Tssr46818 5 81583209 to 81583227 18 + TSS region transcription start site region 46818
Gm46946 5 81628063 to 81628845 782 - lncRNA gene predicted gene, 46946
Gm22048 5 81735927 to 81736015 88 + miRNA gene predicted gene, 22048
Gm16054 5 81791909 to 81798426 6517 - antisense lncRNA gene predicted gene 16054
Tssr46819 5 81794335 to 81794348 13 + TSS region transcription start site region 46819
Tssr46820 5 81794366 to 81794377 11 + TSS region transcription start site region 46820
Cpgi16020 5 81794482 to 81794992 510 CpG island CpG island 16020
Tssr46821 5 81800735 to 81800740 5 + TSS region transcription start site region 46821
Tssr51486 5 81801013 to 81801023 10 - TSS region transcription start site region 51486
2900064F13Rik 5 81826816 to 81827823 1007 + unclassified gene RIKEN cDNA 2900064F13 gene
Cpgi16021 5 81969987 to 81970268 281 CpG island CpG island 16021
D5Mit359 5 82021630 to 82021744 114 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 359
1700008H02Rik 5 82119679 to 82121362 1683 - unclassified gene RIKEN cDNA 1700008H02 gene
1700031L13Rik 5 82122789 to 82124711 1922 - lincRNA gene RIKEN cDNA 1700031L13 gene
Tssr51487 5 82123336 to 82123347 11 - TSS region transcription start site region 51487
Tssr51488 5 82123366 to 82123373 7 - TSS region transcription start site region 51488
Tssr51489 5 82124647 to 82124655 8 - TSS region transcription start site region 51489
Tssr51490 5 82124661 to 82124672 11 - TSS region transcription start site region 51490
Tssr51491 5 82124691 to 82124697 6 - TSS region transcription start site region 51491
Tssr51492 5 82124702 to 82124723 21 - TSS region transcription start site region 51492
Tssr51493 5 82124728 to 82124740 12 - TSS region transcription start site region 51493
D5Ertd102e 5 82149879 to 82150108 229 DNA segment DNA segment, Chr 5, ERATO Doi 102, expressed
D5Dcr70 5 82211008 to 82211104 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 70
Rpl7-ps7 5 82336851 to 82337649 798 + pseudogene ribosomal protein L7, pseudogene 7
Tssr1520 5 82701948 to 82701951 3 + TSS region transcription start site region 1520
Mir1187 5 82798944 to 82799065 121 - miRNA gene microRNA 1187
Gm24129 5 82803765 to 82803861 96 + snRNA gene predicted gene, 24129
Gm43217 5 83040638 to 83041004 366 - pseudogene predicted gene 43217
Tecrl 5 83278145 to 83355195 77050 - protein coding gene trans-2,3-enoyl-CoA reductase-like
Gm15626 5 83299585 to 83300452 867 - pseudogene predicted gene 15626
Tssr51494 5 83354888 to 83354911 23 - TSS region transcription start site region 51494
Tssr51495 5 83354924 to 83354944 20 - TSS region transcription start site region 51495
Tssr51496 5 83354946 to 83354973 27 - TSS region transcription start site region 51496
Tssr51497 5 83354979 to 83355060 81 - TSS region transcription start site region 51497
Tssr51498 5 83355072 to 83355092 20 - TSS region transcription start site region 51498
Tssr51499 5 83355093 to 83355113 20 - TSS region transcription start site region 51499
Tssr51500 5 83355120 to 83355127 7 - TSS region transcription start site region 51500
M2fscn2 5 83381814 to 83381814 0 QTL modifier 2 of FSCN2
M1fscn2 5 83381814 to 83381814 0 QTL modifier 1 of Fscn2
D5Mit396 5 83446310 to 83446443 133 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 396
Gm44303 5 83464794 to 83464876 82 + miRNA gene predicted gene, 44303
D5Mit397 5 83520791 to 83521014 223 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 397
Gm25765 5 83648823 to 83648954 131 - snoRNA gene predicted gene, 25765
Gm25806 5 83690004 to 83690125 121 - snRNA gene predicted gene, 25806
Gm24792 5 83723462 to 83723589 127 - snoRNA gene predicted gene, 24792
Gm2337 5 83728594 to 83729157 563 + pseudogene predicted gene 2337
Tssr46822 5 83837189 to 83837195 6 + TSS region transcription start site region 46822
Gm4866 5 83863163 to 83863751 588 + pseudogene predicted gene 4866
Epha5 5 84054761 to 84417382 362621 - protein coding gene Eph receptor A5
Tssr51501 5 84066985 to 84067014 29 - TSS region transcription start site region 51501
Tssr51502 5 84067041 to 84067068 27 - TSS region transcription start site region 51502
Tssr51503 5 84067102 to 84067112 10 - TSS region transcription start site region 51503
Tssr51504 5 84067116 to 84067139 23 - TSS region transcription start site region 51504
Tssr51505 5 84067185 to 84067204 19 - TSS region transcription start site region 51505
Tssr46823 5 84123212 to 84123217 5 + TSS region transcription start site region 46823
Hmgn2-ps1 5 84123313 to 84123591 278 + pseudogene high mobility group nucleosomal binding domain 2, pseudogene 1
Tssr51506 5 84321734 to 84321742 8 - TSS region transcription start site region 51506
Cpgi16022 5 84416096 to 84416782 686 CpG island CpG island 16022
Cpgi16023 5 84416882 to 84417839 957 CpG island CpG island 16023
Tssr51507 5 84417112 to 84417119 7 - TSS region transcription start site region 51507
Tssr51508 5 84417143 to 84417150 7 - TSS region transcription start site region 51508
Tssr51509 5 84417298 to 84417309 11 - TSS region transcription start site region 51509
Tssr51510 5 84417324 to 84417337 13 - TSS region transcription start site region 51510
Tssr51511 5 84417368 to 84417389 21 - TSS region transcription start site region 51511
Tssr51512 5 84417395 to 84417400 5 - TSS region transcription start site region 51512
Tssr51513 5 84417478 to 84417489 11 - TSS region transcription start site region 51513
Gm42163 5 84417527 to 84466952 49425 + lncRNA gene predicted gene, 42163
Gm43532 5 84428805 to 84432620 3815 + lincRNA gene predicted gene 43532
Gm43531 5 84618706 to 84619819 1113 + pseudogene predicted gene 43531
Lfibq5 5 84635994 to 89818182 5182188 QTL liver fibrosis QTL 5
D5Mit414 5 84641880 to 84642009 129 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 414
Gm20104 5 84807321 to 84808331 1010 - pseudogene predicted gene, 20104
Gm21006 5 84866179 to 84866845 666 - pseudogene predicted gene, 21006
Cpgi16024 5 84895745 to 84896128 383 CpG island CpG island 16024
D5Mit362 5 85009602 to 85009717 115 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 362
D5Mit206 5 85117113 to 85117246 133 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 206
D5Mit154 5 85224632 to 85224779 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 154