Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:77105587-77605602

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hopx 5 77086988 to 77115121 28133 - protein coding gene HOP homeobox
Cpgi16006 5 77114815 to 77115042 227 CpG island CpG island 16006
Tssr51451 5 77114872 to 77114886 14 - TSS region transcription start site region 51451
Tssr51452 5 77114910 to 77114922 12 - TSS region transcription start site region 51452
Tssr51453 5 77115083 to 77115094 11 - TSS region transcription start site region 51453
Tssr51454 5 77115145 to 77115156 11 - TSS region transcription start site region 51454
Gm15831 5 77116810 to 77122348 5538 - lincRNA gene predicted gene 15831
Tssr46775 5 77126684 to 77126701 17 + TSS region transcription start site region 46775
Tssr51455 5 77134530 to 77134534 4 - TSS region transcription start site region 51455
Chaer1 5 77138471 to 77140252 1781 - lincRNA gene cardiac hypertrophy associated epigenetic regulator 1
Tssr51456 5 77140277 to 77140299 22 - TSS region transcription start site region 51456
Gm34598 5 77146097 to 77159173 13076 - lncRNA gene predicted gene, 34598
Tssr51457 5 77158892 to 77158931 39 - TSS region transcription start site region 51457
Cpgi16007 5 77167708 to 77167945 237 CpG island CpG island 16007
Spink2 5 77205107 to 77211471 6364 - protein coding gene serine peptidase inhibitor, Kazal type 2
Tssr51458 5 77205297 to 77205304 7 - TSS region transcription start site region 51458
Tssr46776 5 77205353 to 77205368 15 + TSS region transcription start site region 46776
Cpgi16008 5 77211054 to 77211638 584 CpG island CpG island 16008
Tssr51459 5 77211144 to 77211154 10 - TSS region transcription start site region 51459
Tssr51460 5 77211164 to 77211170 6 - TSS region transcription start site region 51460
Tssr51461 5 77211192 to 77211207 15 - TSS region transcription start site region 51461
Tssr51462 5 77211218 to 77211241 23 - TSS region transcription start site region 51462
Tssr51463 5 77211392 to 77211403 11 - TSS region transcription start site region 51463
Tssr51464 5 77211405 to 77211458 53 - TSS region transcription start site region 51464
Tssr51465 5 77211463 to 77211484 21 - TSS region transcription start site region 51465
Tssr51466 5 77216218 to 77216221 3 - TSS region transcription start site region 51466
Tssr51467 5 77216246 to 77216251 5 - TSS region transcription start site region 51467
Tssr51468 5 77216255 to 77216270 15 - TSS region transcription start site region 51468
Gm19060 5 77227378 to 77227950 572 + pseudogene predicted gene, 19060
Tssr51469 5 77246227 to 77246237 10 - TSS region transcription start site region 51469
Tssr51470 5 77246262 to 77246273 11 - TSS region transcription start site region 51470
D5Nds3 5 77255193 to 77255320 127 DNA segment DNA segment, Chr 5, Nuffield Department of Surgery 3
Ahl14 5 77255215 to 77255313 98 QTL age related hearing loss, early onset 14
D5Mit113 5 77255215 to 77255313 98 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 113
Tssr46777 5 77260310 to 77260330 20 + TSS region transcription start site region 46777
Tssr1515 5 77261686 to 77261687 1 + TSS region transcription start site region 1515
Cpgi16009 5 77265032 to 77266968 1936 CpG island CpG island 16009
Tssr46778 5 77265454 to 77265549 95 + TSS region transcription start site region 46778
Rest 5 77265494 to 77283697 18203 + protein coding gene RE1-silencing transcription factor
Tssr46779 5 77266156 to 77266171 15 + TSS region transcription start site region 46779
Tssr1516 5 77266184 to 77266209 25 + TSS region transcription start site region 1516
Tssr46780 5 77266216 to 77266232 16 + TSS region transcription start site region 46780
Tssr46781 5 77266233 to 77266244 11 + TSS region transcription start site region 46781
Tssr46782 5 77266279 to 77266293 14 + TSS region transcription start site region 46782
Tssr46783 5 77266365 to 77266389 24 + TSS region transcription start site region 46783
Tssr46784 5 77268737 to 77268757 20 + TSS region transcription start site region 46784
Mir5098 5 77272757 to 77272838 81 + miRNA gene microRNA 5098
Tssr46785 5 77280786 to 77280796 10 + TSS region transcription start site region 46785
Tssr46786 5 77283970 to 77283976 6 + TSS region transcription start site region 46786
Tssr46787 5 77285668 to 77285681 13 + TSS region transcription start site region 46787
Noa1 5 77294182 to 77310084 15902 - protein coding gene nitric oxide associated 1
Cpgi16010 5 77308913 to 77310916 2003 CpG island CpG island 16010
Tssr51471 5 77310049 to 77310094 45 - TSS region transcription start site region 51471
Tssr51472 5 77310384 to 77310432 48 - TSS region transcription start site region 51472
Tssr46788 5 77310478 to 77310545 67 + TSS region transcription start site region 46788
Polr2b 5 77310484 to 77349328 38844 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide B
Tssr46789 5 77312543 to 77312560 17 + TSS region transcription start site region 46789
Gm42758 5 77318655 to 77318937 282 + pseudogene predicted gene 42758
Tssr46790 5 77349238 to 77349276 38 + TSS region transcription start site region 46790
Igfbp7 5 77349240 to 77408041 58801 - protein coding gene insulin-like growth factor binding protein 7
Tssr51473 5 77349337 to 77349437 100 - TSS region transcription start site region 51473
Tssr46791 5 77349352 to 77349402 50 + TSS region transcription start site region 46791
Tssr51474 5 77349484 to 77349495 11 - TSS region transcription start site region 51474
Tssr51475 5 77351064 to 77351079 15 - TSS region transcription start site region 51475
Tssr46792 5 77351225 to 77351251 26 + TSS region transcription start site region 46792
Tssr51476 5 77351249 to 77351267 18 - TSS region transcription start site region 51476
Tssr51477 5 77351283 to 77351301 18 - TSS region transcription start site region 51477
Tssr46793 5 77351288 to 77351328 40 + TSS region transcription start site region 46793
Tssr1517 5 77351304 to 77351339 35 - TSS region transcription start site region 1517
Tssr51478 5 77351349 to 77351364 15 - TSS region transcription start site region 51478
Tssr51479 5 77355587 to 77355602 15 - TSS region transcription start site region 51479
Tssr51480 5 77355644 to 77355675 31 - TSS region transcription start site region 51480
Tssr51481 5 77355835 to 77355840 5 - TSS region transcription start site region 51481
D0Wsu3 5 77367509 to 77367670 161 DNA segment DNA segment, Wayne State University 3
Tssr51482 5 77370808 to 77370812 4 - TSS region transcription start site region 51482
Tssr51483 5 77381119 to 77381124 5 - TSS region transcription start site region 51483
D5Buc53 5 77385685 to 77385833 148 DNA segment DNA segment, Chr 5, Bucan 53
Gm34648 5 77386599 to 77393683 7084 + antisense lncRNA gene predicted gene, 34648
Tssr46794 5 77387021 to 77387026 5 + TSS region transcription start site region 46794
Cpgi16011 5 77407401 to 77408329 928 CpG island CpG island 16011
Tssr46795 5 77407571 to 77407583 12 + TSS region transcription start site region 46795
Tssr51484 5 77408034 to 77408051 17 - TSS region transcription start site region 51484
Gm34728 5 77433718 to 77447675 13957 + lincRNA gene predicted gene, 34728
Cpgi16012 5 77434261 to 77434717 456 CpG island CpG island 16012
Cpgi16013 5 77459996 to 77460222 226 CpG island CpG island 16013
Cpgi16014 5 77462713 to 77462937 224 CpG island CpG island 16014
Tssr46796 5 77465462 to 77465481 19 + TSS region transcription start site region 46796
Tssr46797 5 77465483 to 77465496 13 + TSS region transcription start site region 46797
1700017L05Rik 5 77465488 to 77468851 3363 + lincRNA gene RIKEN cDNA 1700017L05 gene
Gm42761 5 77485727 to 77494361 8634 + lincRNA gene predicted gene 42761
D5Mit203 5 77509938 to 77510047 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 203
Pea15b 5 77511178 to 77511748 570 - pseudogene phosphoprotein enriched in astrocytes 15B