Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:76960276-77230277

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Desp3 5 72775341 to 77098356 4323015 QTL despair 3
Paics 5 76951308 to 76967507 16199 + protein coding gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
Tssr46756 5 76965939 to 76965942 3 + TSS region transcription start site region 46756
Tssr51440 5 76971483 to 76971487 4 - TSS region transcription start site region 51440
Cpgi16001 5 76974357 to 76975284 927 CpG island CpG island 16001
Tssr51441 5 76974593 to 76974636 43 - TSS region transcription start site region 51441
Tssr46757 5 76974692 to 76974727 35 + TSS region transcription start site region 46757
Srp72 5 76974701 to 76999935 25234 + protein coding gene signal recognition particle 72
Tssr46758 5 76995770 to 76995789 19 + TSS region transcription start site region 46758
Tssr46759 5 76995828 to 76995842 14 + TSS region transcription start site region 46759
Tssr46760 5 76995849 to 76995860 11 + TSS region transcription start site region 46760
Tssr46761 5 76995871 to 76995884 13 + TSS region transcription start site region 46761
Tssr46762 5 76998201 to 76998235 34 + TSS region transcription start site region 46762
Tssr46763 5 77001450 to 77001461 11 + TSS region transcription start site region 46763
Tssr46764 5 77001463 to 77001470 7 + TSS region transcription start site region 46764
Tssr46765 5 77001510 to 77001518 8 + TSS region transcription start site region 46765
Tssr46766 5 77001547 to 77001595 48 + TSS region transcription start site region 46766
Tssr46767 5 77001750 to 77001756 6 + TSS region transcription start site region 46767
Cpgi16002 5 77002729 to 77003063 334 CpG island CpG island 16002
Arl9 5 77004055 to 77010606 6551 + protein coding gene ADP-ribosylation factor-like 9
1700112J05Rik 5 77006449 to 77018863 12414 - lincRNA gene RIKEN cDNA 1700112J05 gene
D5Buc52 5 77007833 to 77007940 107 DNA segment DNA segment, Chr 5, Bucan 52
Cpgi16003 5 77015765 to 77016500 735 CpG island CpG island 16003
Tssr51442 5 77015929 to 77015940 11 - TSS region transcription start site region 51442
Tssr46768 5 77015982 to 77015995 13 + TSS region transcription start site region 46768
Tssr46769 5 77016023 to 77016054 31 + TSS region transcription start site region 46769
Thegl 5 77016023 to 77061529 45506 + protein coding gene theg spermatid protein like
Tssr51443 5 77018840 to 77018853 13 - TSS region transcription start site region 51443
Tssr51444 5 77018857 to 77018867 10 - TSS region transcription start site region 51444
Pwgrq15 5 77027976 to 97510356 20482380 QTL post-weaning growth rate QTL 15
Ogrq2 5 77027976 to 97510356 20482380 QTL overall growth rate QTL 2
Tssr46770 5 77037010 to 77037043 33 + TSS region transcription start site region 46770
Tssr46771 5 77037045 to 77037072 27 + TSS region transcription start site region 46771
Tssr46772 5 77037076 to 77037087 11 + TSS region transcription start site region 46772
Cpgi16004 5 77061349 to 77061611 262 CpG island CpG island 16004
Hopx 5 77086988 to 77115121 28133 - protein coding gene HOP homeobox
Cpgi16005 5 77094655 to 77095669 1014 CpG island CpG island 16005
Tssr51445 5 77095018 to 77095039 21 - TSS region transcription start site region 51445
Tssr51446 5 77095150 to 77095161 11 - TSS region transcription start site region 51446
Tssr51447 5 77095174 to 77095185 11 - TSS region transcription start site region 51447
Tssr51448 5 77095206 to 77095220 14 - TSS region transcription start site region 51448
Tssr51449 5 77095225 to 77095275 50 - TSS region transcription start site region 51449
Tssr1514 5 77095276 to 77095277 1 - TSS region transcription start site region 1514
Tssr51450 5 77095279 to 77095290 11 - TSS region transcription start site region 51450
Tssr46773 5 77097453 to 77097460 7 + TSS region transcription start site region 46773
D5Mit357 5 77098234 to 77098356 122 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 357
Listr1 5 77098234 to 77098356 122 QTL listeriosis resistance 1
Hopxos 5 77098830 to 77102313 3483 + antisense lncRNA gene HOP homeobox, opposite strand
Tssr46774 5 77098860 to 77098875 15 + TSS region transcription start site region 46774
Cpgi16006 5 77114815 to 77115042 227 CpG island CpG island 16006
Tssr51451 5 77114872 to 77114886 14 - TSS region transcription start site region 51451
Tssr51452 5 77114910 to 77114922 12 - TSS region transcription start site region 51452
Tssr51453 5 77115083 to 77115094 11 - TSS region transcription start site region 51453
Tssr51454 5 77115145 to 77115156 11 - TSS region transcription start site region 51454
Gm15831 5 77116810 to 77122348 5538 - lincRNA gene predicted gene 15831
Tssr46775 5 77126684 to 77126701 17 + TSS region transcription start site region 46775
Tssr51455 5 77134530 to 77134534 4 - TSS region transcription start site region 51455
Chaer1 5 77138471 to 77140252 1781 - lincRNA gene cardiac hypertrophy associated epigenetic regulator 1
Tssr51456 5 77140277 to 77140299 22 - TSS region transcription start site region 51456
Gm34598 5 77146097 to 77159173 13076 - lncRNA gene predicted gene, 34598
Tssr51457 5 77158892 to 77158931 39 - TSS region transcription start site region 51457
Cpgi16007 5 77167708 to 77167945 237 CpG island CpG island 16007
Spink2 5 77205107 to 77211471 6364 - protein coding gene serine peptidase inhibitor, Kazal type 2
Tssr51458 5 77205297 to 77205304 7 - TSS region transcription start site region 51458
Tssr46776 5 77205353 to 77205368 15 + TSS region transcription start site region 46776
Cpgi16008 5 77211054 to 77211638 584 CpG island CpG island 16008
Tssr51459 5 77211144 to 77211154 10 - TSS region transcription start site region 51459
Tssr51460 5 77211164 to 77211170 6 - TSS region transcription start site region 51460
Tssr51461 5 77211192 to 77211207 15 - TSS region transcription start site region 51461
Tssr51462 5 77211218 to 77211241 23 - TSS region transcription start site region 51462
Tssr51463 5 77211392 to 77211403 11 - TSS region transcription start site region 51463
Tssr51464 5 77211405 to 77211458 53 - TSS region transcription start site region 51464
Tssr51465 5 77211463 to 77211484 21 - TSS region transcription start site region 51465
Tssr51466 5 77216218 to 77216221 3 - TSS region transcription start site region 51466
Tssr51467 5 77216246 to 77216251 5 - TSS region transcription start site region 51467
Tssr51468 5 77216255 to 77216270 15 - TSS region transcription start site region 51468
Gm19060 5 77227378 to 77227950 572 + pseudogene predicted gene, 19060