Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:76872010-77202043

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Desp3 5 72775341 to 77098356 4323015 QTL despair 3
C530008M17Rik 5 76657779 to 76873554 215775 + protein coding gene RIKEN cDNA C530008M17 gene
Aasdh 5 76873659 to 76905514 31855 - protein coding gene aminoadipate-semialdehyde dehydrogenase
Cpgi15998 5 76876121 to 76876579 458 CpG island CpG island 15998
D5Mit306 5 76882159 to 76882252 93 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 306
Cpgi15999 5 76905103 to 76905977 874 CpG island CpG island 15999
Tssr51433 5 76905379 to 76905393 14 - TSS region transcription start site region 51433
Tssr51434 5 76905441 to 76905459 18 - TSS region transcription start site region 51434
Tssr51435 5 76905463 to 76905507 44 - TSS region transcription start site region 51435
Ppat 5 76913249 to 76951578 38329 - protein coding gene phosphoribosyl pyrophosphate amidotransferase
Tssr46750 5 76928344 to 76928376 32 + TSS region transcription start site region 46750
2310040G07Rik 5 76928368 to 76947758 19390 + antisense lncRNA gene RIKEN cDNA 2310040G07 gene
Gm42102 5 76931520 to 76938146 6626 + protein coding gene predicted gene, 42102
Cpgi16000 5 76950790 to 76952015 1225 CpG island CpG island 16000
Tssr51436 5 76951160 to 76951174 14 - TSS region transcription start site region 51436
Tssr51437 5 76951178 to 76951198 20 - TSS region transcription start site region 51437
Tssr51438 5 76951207 to 76951232 25 - TSS region transcription start site region 51438
Paics 5 76951308 to 76967507 16199 + protein coding gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
Tssr46751 5 76951325 to 76951363 38 + TSS region transcription start site region 46751
Tssr46752 5 76951383 to 76951394 11 + TSS region transcription start site region 46752
Tssr51439 5 76951560 to 76951589 29 - TSS region transcription start site region 51439
Tssr46753 5 76951627 to 76951638 11 + TSS region transcription start site region 46753
Tssr46754 5 76951716 to 76951795 79 + TSS region transcription start site region 46754
Tssr46755 5 76951799 to 76951811 12 + TSS region transcription start site region 46755
Tssr46756 5 76965939 to 76965942 3 + TSS region transcription start site region 46756
Tssr51440 5 76971483 to 76971487 4 - TSS region transcription start site region 51440
Cpgi16001 5 76974357 to 76975284 927 CpG island CpG island 16001
Tssr51441 5 76974593 to 76974636 43 - TSS region transcription start site region 51441
Tssr46757 5 76974692 to 76974727 35 + TSS region transcription start site region 46757
Srp72 5 76974701 to 76999935 25234 + protein coding gene signal recognition particle 72
Tssr46758 5 76995770 to 76995789 19 + TSS region transcription start site region 46758
Tssr46759 5 76995828 to 76995842 14 + TSS region transcription start site region 46759
Tssr46760 5 76995849 to 76995860 11 + TSS region transcription start site region 46760
Tssr46761 5 76995871 to 76995884 13 + TSS region transcription start site region 46761
Tssr46762 5 76998201 to 76998235 34 + TSS region transcription start site region 46762
Tssr46763 5 77001450 to 77001461 11 + TSS region transcription start site region 46763
Tssr46764 5 77001463 to 77001470 7 + TSS region transcription start site region 46764
Tssr46765 5 77001510 to 77001518 8 + TSS region transcription start site region 46765
Tssr46766 5 77001547 to 77001595 48 + TSS region transcription start site region 46766
Tssr46767 5 77001750 to 77001756 6 + TSS region transcription start site region 46767
Cpgi16002 5 77002729 to 77003063 334 CpG island CpG island 16002
Arl9 5 77004055 to 77010606 6551 + protein coding gene ADP-ribosylation factor-like 9
1700112J05Rik 5 77006449 to 77018863 12414 - lincRNA gene RIKEN cDNA 1700112J05 gene
D5Buc52 5 77007833 to 77007940 107 DNA segment DNA segment, Chr 5, Bucan 52
Cpgi16003 5 77015765 to 77016500 735 CpG island CpG island 16003
Tssr51442 5 77015929 to 77015940 11 - TSS region transcription start site region 51442
Tssr46768 5 77015982 to 77015995 13 + TSS region transcription start site region 46768
Tssr46769 5 77016023 to 77016054 31 + TSS region transcription start site region 46769
Thegl 5 77016023 to 77061529 45506 + protein coding gene theg spermatid protein like
Tssr51443 5 77018840 to 77018853 13 - TSS region transcription start site region 51443
Tssr51444 5 77018857 to 77018867 10 - TSS region transcription start site region 51444
Pwgrq15 5 77027976 to 97510356 20482380 QTL post-weaning growth rate QTL 15
Ogrq2 5 77027976 to 97510356 20482380 QTL overall growth rate QTL 2
Tssr46770 5 77037010 to 77037043 33 + TSS region transcription start site region 46770
Tssr46771 5 77037045 to 77037072 27 + TSS region transcription start site region 46771
Tssr46772 5 77037076 to 77037087 11 + TSS region transcription start site region 46772
Cpgi16004 5 77061349 to 77061611 262 CpG island CpG island 16004
Hopx 5 77086988 to 77115121 28133 - protein coding gene HOP homeobox
Cpgi16005 5 77094655 to 77095669 1014 CpG island CpG island 16005
Tssr51445 5 77095018 to 77095039 21 - TSS region transcription start site region 51445
Tssr51446 5 77095150 to 77095161 11 - TSS region transcription start site region 51446
Tssr51447 5 77095174 to 77095185 11 - TSS region transcription start site region 51447
Tssr51448 5 77095206 to 77095220 14 - TSS region transcription start site region 51448
Tssr51449 5 77095225 to 77095275 50 - TSS region transcription start site region 51449
Tssr1514 5 77095276 to 77095277 1 - TSS region transcription start site region 1514
Tssr51450 5 77095279 to 77095290 11 - TSS region transcription start site region 51450
Tssr46773 5 77097453 to 77097460 7 + TSS region transcription start site region 46773
D5Mit357 5 77098234 to 77098356 122 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 357
Listr1 5 77098234 to 77098356 122 QTL listeriosis resistance 1
Hopxos 5 77098830 to 77102313 3483 + antisense lncRNA gene HOP homeobox, opposite strand
Tssr46774 5 77098860 to 77098875 15 + TSS region transcription start site region 46774
Cpgi16006 5 77114815 to 77115042 227 CpG island CpG island 16006
Tssr51451 5 77114872 to 77114886 14 - TSS region transcription start site region 51451
Tssr51452 5 77114910 to 77114922 12 - TSS region transcription start site region 51452
Tssr51453 5 77115083 to 77115094 11 - TSS region transcription start site region 51453
Tssr51454 5 77115145 to 77115156 11 - TSS region transcription start site region 51454
Gm15831 5 77116810 to 77122348 5538 - lincRNA gene predicted gene 15831
Tssr46775 5 77126684 to 77126701 17 + TSS region transcription start site region 46775
Tssr51455 5 77134530 to 77134534 4 - TSS region transcription start site region 51455
Chaer1 5 77138471 to 77140252 1781 - lincRNA gene cardiac hypertrophy associated epigenetic regulator 1
Tssr51456 5 77140277 to 77140299 22 - TSS region transcription start site region 51456
Gm34598 5 77146097 to 77159173 13076 - lncRNA gene predicted gene, 34598
Tssr51457 5 77158892 to 77158931 39 - TSS region transcription start site region 51457
Cpgi16007 5 77167708 to 77167945 237 CpG island CpG island 16007