Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Desp3 | 5 | 4323015 | QTL | despair 3 | ||
C530008M17Rik | 5 | 215775 | + | protein coding gene | RIKEN cDNA C530008M17 gene | |
Tssr46732 | 5 | 36 | + | TSS region | transcription start site region 46732 | |
Tssr46733 | 5 | 5 | + | TSS region | transcription start site region 46733 | |
Tssr46734 | 5 | 10 | + | TSS region | transcription start site region 46734 | |
Mdq16 | 5 | 0 | QTL | mammary ductal QTL 16 | ||
Gm7494 | 5 | 440 | - | pseudogene | predicted gene 7494 | |
Gm34369 | 5 | 2619 | - | lncRNA gene | predicted gene, 34369 | |
Tssr46735 | 5 | 16 | + | TSS region | transcription start site region 46735 | |
Tssr46736 | 5 | 46 | + | TSS region | transcription start site region 46736 | |
Tssr46737 | 5 | 45 | + | TSS region | transcription start site region 46737 | |
Tssr46738 | 5 | 64 | + | TSS region | transcription start site region 46738 | |
Tssr46739 | 5 | 8 | + | TSS region | transcription start site region 46739 | |
Tssr46740 | 5 | 11 | + | TSS region | transcription start site region 46740 | |
Tssr46741 | 5 | 17 | + | TSS region | transcription start site region 46741 | |
Tssr46742 | 5 | 14 | + | TSS region | transcription start site region 46742 | |
Tssr46743 | 5 | 40 | + | TSS region | transcription start site region 46743 | |
Tssr46744 | 5 | 11 | + | TSS region | transcription start site region 46744 | |
Tssr46745 | 5 | 1 | + | TSS region | transcription start site region 46745 | |
Cpgi15997 | 5 | 2315 | CpG island | CpG island 15997 | ||
Tssr46746 | 5 | 16 | + | TSS region | transcription start site region 46746 | |
Tssr46747 | 5 | 17 | + | TSS region | transcription start site region 46747 | |
Tssr51432 | 5 | 16 | - | TSS region | transcription start site region 51432 | |
Tssr46748 | 5 | 14 | + | TSS region | transcription start site region 46748 | |
Tssr46749 | 5 | 12 | + | TSS region | transcription start site region 46749 | |
Aasdh | 5 | 31855 | - | protein coding gene | aminoadipate-semialdehyde dehydrogenase | |
Cpgi15998 | 5 | 458 | CpG island | CpG island 15998 | ||
D5Mit306 | 5 | 93 | DNA segment | DNA segment, Chr 5, Massachusetts Institute of Technology 306 | ||
Cpgi15999 | 5 | 874 | CpG island | CpG island 15999 | ||
Tssr51433 | 5 | 14 | - | TSS region | transcription start site region 51433 | |
Tssr51434 | 5 | 18 | - | TSS region | transcription start site region 51434 | |
Tssr51435 | 5 | 44 | - | TSS region | transcription start site region 51435 | |
Ppat | 5 | 38329 | - | protein coding gene | phosphoribosyl pyrophosphate amidotransferase | |
Tssr46750 | 5 | 32 | + | TSS region | transcription start site region 46750 | |
2310040G07Rik | 5 | 19390 | + | antisense lncRNA gene | RIKEN cDNA 2310040G07 gene | |
Gm42102 | 5 | 6626 | + | protein coding gene | predicted gene, 42102 | |
Cpgi16000 | 5 | 1225 | CpG island | CpG island 16000 | ||
Tssr51436 | 5 | 14 | - | TSS region | transcription start site region 51436 | |
Tssr51437 | 5 | 20 | - | TSS region | transcription start site region 51437 | |
Tssr51438 | 5 | 25 | - | TSS region | transcription start site region 51438 | |
Paics | 5 | 16199 | + | protein coding gene | phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase | |
Tssr46751 | 5 | 38 | + | TSS region | transcription start site region 46751 | |
Tssr46752 | 5 | 11 | + | TSS region | transcription start site region 46752 | |
Tssr51439 | 5 | 29 | - | TSS region | transcription start site region 51439 | |
Tssr46753 | 5 | 11 | + | TSS region | transcription start site region 46753 | |
Tssr46754 | 5 | 79 | + | TSS region | transcription start site region 46754 | |
Tssr46755 | 5 | 12 | + | TSS region | transcription start site region 46755 | |
Tssr46756 | 5 | 3 | + | TSS region | transcription start site region 46756 | |
Tssr51440 | 5 | 4 | - | TSS region | transcription start site region 51440 | |
Cpgi16001 | 5 | 927 | CpG island | CpG island 16001 | ||
Tssr51441 | 5 | 43 | - | TSS region | transcription start site region 51441 | |
Tssr46757 | 5 | 35 | + | TSS region | transcription start site region 46757 | |
Srp72 | 5 | 25234 | + | protein coding gene | signal recognition particle 72 | |
Tssr46758 | 5 | 19 | + | TSS region | transcription start site region 46758 | |
Tssr46759 | 5 | 14 | + | TSS region | transcription start site region 46759 | |
Tssr46760 | 5 | 11 | + | TSS region | transcription start site region 46760 | |
Tssr46761 | 5 | 13 | + | TSS region | transcription start site region 46761 | |
Tssr46762 | 5 | 34 | + | TSS region | transcription start site region 46762 | |
Tssr46763 | 5 | 11 | + | TSS region | transcription start site region 46763 | |
Tssr46764 | 5 | 7 | + | TSS region | transcription start site region 46764 | |
Tssr46765 | 5 | 8 | + | TSS region | transcription start site region 46765 | |
Tssr46766 | 5 | 48 | + | TSS region | transcription start site region 46766 | |
Tssr46767 | 5 | 6 | + | TSS region | transcription start site region 46767 | |
Cpgi16002 | 5 | 334 | CpG island | CpG island 16002 | ||
Arl9 | 5 | 6551 | + | protein coding gene | ADP-ribosylation factor-like 9 | |
1700112J05Rik | 5 | 12414 | - | lincRNA gene | RIKEN cDNA 1700112J05 gene | |
D5Buc52 | 5 | 107 | DNA segment | DNA segment, Chr 5, Bucan 52 | ||
Cpgi16003 | 5 | 735 | CpG island | CpG island 16003 | ||
Tssr51442 | 5 | 11 | - | TSS region | transcription start site region 51442 | |
Tssr46768 | 5 | 13 | + | TSS region | transcription start site region 46768 | |
Tssr46769 | 5 | 31 | + | TSS region | transcription start site region 46769 | |
Thegl | 5 | 45506 | + | protein coding gene | theg spermatid protein like | |
Tssr51443 | 5 | 13 | - | TSS region | transcription start site region 51443 | |
Tssr51444 | 5 | 10 | - | TSS region | transcription start site region 51444 | |
Pwgrq15 | 5 | 20482380 | QTL | post-weaning growth rate QTL 15 | ||
Ogrq2 | 5 | 20482380 | QTL | overall growth rate QTL 2 | ||
Tssr46770 | 5 | 33 | + | TSS region | transcription start site region 46770 | |
Tssr46771 | 5 | 27 | + | TSS region | transcription start site region 46771 | |
Tssr46772 | 5 | 11 | + | TSS region | transcription start site region 46772 | |
Cpgi16004 | 5 | 262 | CpG island | CpG island 16004 | ||
Hopx | 5 | 28133 | - | protein coding gene | HOP homeobox | |
Cpgi16005 | 5 | 1014 | CpG island | CpG island 16005 | ||
Tssr51445 | 5 | 21 | - | TSS region | transcription start site region 51445 | |
Tssr51446 | 5 | 11 | - | TSS region | transcription start site region 51446 | |
Tssr51447 | 5 | 11 | - | TSS region | transcription start site region 51447 | |
Tssr51448 | 5 | 14 | - | TSS region | transcription start site region 51448 | |
Tssr51449 | 5 | 50 | - | TSS region | transcription start site region 51449 | |
Tssr1514 | 5 | 1 | - | TSS region | transcription start site region 1514 | |
Tssr51450 | 5 | 11 | - | TSS region | transcription start site region 51450 | |
Tssr46773 | 5 | 7 | + | TSS region | transcription start site region 46773 | |
D5Mit357 | 5 | 122 | DNA segment | DNA Segment, Chr 5, Massachusetts Institute of Technology 357 | ||
Listr1 | 5 | 122 | QTL | listeriosis resistance 1 | ||
Hopxos | 5 | 3483 | + | antisense lncRNA gene | HOP homeobox, opposite strand | |
Tssr46774 | 5 | 15 | + | TSS region | transcription start site region 46774 | |
Cpgi16006 | 5 | 227 | CpG island | CpG island 16006 | ||
Tssr51451 | 5 | 14 | - | TSS region | transcription start site region 51451 | |
Tssr51452 | 5 | 12 | - | TSS region | transcription start site region 51452 | |
Tssr51453 | 5 | 11 | - | TSS region | transcription start site region 51453 | |
Tssr51454 | 5 | 11 | - | TSS region | transcription start site region 51454 | |
Gm15831 | 5 | 5538 | - | lincRNA gene | predicted gene 15831 | |
Tssr46775 | 5 | 17 | + | TSS region | transcription start site region 46775 | |
Tssr51455 | 5 | 4 | - | TSS region | transcription start site region 51455 | |
Chaer1 | 5 | 1781 | - | lincRNA gene | cardiac hypertrophy associated epigenetic regulator 1 | |
Tssr51456 | 5 | 22 | - | TSS region | transcription start site region 51456 | |
Gm34598 | 5 | 13076 | - | lncRNA gene | predicted gene, 34598 | |
Tssr51457 | 5 | 39 | - | TSS region | transcription start site region 51457 | |
Cpgi16007 | 5 | 237 | CpG island | CpG island 16007 | ||
Spink2 | 5 | 6364 | - | protein coding gene | serine peptidase inhibitor, Kazal type 2 | |
Tssr51458 | 5 | 7 | - | TSS region | transcription start site region 51458 | |
Tssr46776 | 5 | 15 | + | TSS region | transcription start site region 46776 | |
Cpgi16008 | 5 | 584 | CpG island | CpG island 16008 | ||
Tssr51459 | 5 | 10 | - | TSS region | transcription start site region 51459 | |
Tssr51460 | 5 | 6 | - | TSS region | transcription start site region 51460 | |
Tssr51461 | 5 | 15 | - | TSS region | transcription start site region 51461 | |
Tssr51462 | 5 | 23 | - | TSS region | transcription start site region 51462 | |
Tssr51463 | 5 | 11 | - | TSS region | transcription start site region 51463 | |
Tssr51464 | 5 | 53 | - | TSS region | transcription start site region 51464 | |
Tssr51465 | 5 | 21 | - | TSS region | transcription start site region 51465 | |
Tssr51466 | 5 | 3 | - | TSS region | transcription start site region 51466 | |
Tssr51467 | 5 | 5 | - | TSS region | transcription start site region 51467 | |
Tssr51468 | 5 | 15 | - | TSS region | transcription start site region 51468 | |
Gm19060 | 5 | 572 | + | pseudogene | predicted gene, 19060 | |
Tssr51469 | 5 | 10 | - | TSS region | transcription start site region 51469 | |
Tssr51470 | 5 | 11 | - | TSS region | transcription start site region 51470 | |
D5Nds3 | 5 | 127 | DNA segment | DNA segment, Chr 5, Nuffield Department of Surgery 3 | ||
Ahl14 | 5 | 98 | QTL | age related hearing loss, early onset 14 | ||
D5Mit113 | 5 | 98 | DNA segment | DNA segment, Chr 5, Massachusetts Institute of Technology 113 | ||
Tssr46777 | 5 | 20 | + | TSS region | transcription start site region 46777 | |
Tssr1515 | 5 | 1 | + | TSS region | transcription start site region 1515 | |
Cpgi16009 | 5 | 1936 | CpG island | CpG island 16009 | ||
Tssr46778 | 5 | 95 | + | TSS region | transcription start site region 46778 | |
Rest | 5 | 18203 | + | protein coding gene | RE1-silencing transcription factor | |
Tssr46779 | 5 | 15 | + | TSS region | transcription start site region 46779 | |
Tssr1516 | 5 | 25 | + | TSS region | transcription start site region 1516 | |
Tssr46780 | 5 | 16 | + | TSS region | transcription start site region 46780 | |
Tssr46781 | 5 | 11 | + | TSS region | transcription start site region 46781 | |
Tssr46782 | 5 | 14 | + | TSS region | transcription start site region 46782 | |
Tssr46783 | 5 | 24 | + | TSS region | transcription start site region 46783 | |
Tssr46784 | 5 | 20 | + | TSS region | transcription start site region 46784 | |
Mir5098 | 5 | 81 | + | miRNA gene | microRNA 5098 | |
Tssr46785 | 5 | 10 | + | TSS region | transcription start site region 46785 | |
Tssr46786 | 5 | 6 | + | TSS region | transcription start site region 46786 | |
Tssr46787 | 5 | 13 | + | TSS region | transcription start site region 46787 | |
Noa1 | 5 | 15902 | - | protein coding gene | nitric oxide associated 1 | |
Cpgi16010 | 5 | 2003 | CpG island | CpG island 16010 | ||
Tssr51471 | 5 | 45 | - | TSS region | transcription start site region 51471 | |
Tssr51472 | 5 | 48 | - | TSS region | transcription start site region 51472 | |
Tssr46788 | 5 | 67 | + | TSS region | transcription start site region 46788 | |
Polr2b | 5 | 38844 | + | protein coding gene | polymerase (RNA) II (DNA directed) polypeptide B | |
Tssr46789 | 5 | 17 | + | TSS region | transcription start site region 46789 | |
Gm42758 | 5 | 282 | + | pseudogene | predicted gene 42758 | |
Tssr46790 | 5 | 38 | + | TSS region | transcription start site region 46790 | |
Igfbp7 | 5 | 58801 | - | protein coding gene | insulin-like growth factor binding protein 7 | |
Tssr51473 | 5 | 100 | - | TSS region | transcription start site region 51473 | |
Tssr46791 | 5 | 50 | + | TSS region | transcription start site region 46791 | |
Tssr51474 | 5 | 11 | - | TSS region | transcription start site region 51474 | |
Tssr51475 | 5 | 15 | - | TSS region | transcription start site region 51475 | |
Tssr46792 | 5 | 26 | + | TSS region | transcription start site region 46792 | |
Tssr51476 | 5 | 18 | - | TSS region | transcription start site region 51476 | |
Tssr51477 | 5 | 18 | - | TSS region | transcription start site region 51477 | |
Tssr46793 | 5 | 40 | + | TSS region | transcription start site region 46793 | |
Tssr1517 | 5 | 35 | - | TSS region | transcription start site region 1517 | |
Tssr51478 | 5 | 15 | - | TSS region | transcription start site region 51478 | |
Tssr51479 | 5 | 15 | - | TSS region | transcription start site region 51479 | |
Tssr51480 | 5 | 31 | - | TSS region | transcription start site region 51480 | |
Tssr51481 | 5 | 5 | - | TSS region | transcription start site region 51481 | |
D0Wsu3 | 5 | 161 | DNA segment | DNA segment, Wayne State University 3 | ||
Tssr51482 | 5 | 4 | - | TSS region | transcription start site region 51482 | |
Tssr51483 | 5 | 5 | - | TSS region | transcription start site region 51483 | |
D5Buc53 | 5 | 148 | DNA segment | DNA segment, Chr 5, Bucan 53 | ||
Gm34648 | 5 | 7084 | + | antisense lncRNA gene | predicted gene, 34648 | |
Tssr46794 | 5 | 5 | + | TSS region | transcription start site region 46794 | |
Cpgi16011 | 5 | 928 | CpG island | CpG island 16011 | ||
Tssr46795 | 5 | 12 | + | TSS region | transcription start site region 46795 | |
Tssr51484 | 5 | 17 | - | TSS region | transcription start site region 51484 |