Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:76645790-77257015

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137 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Desp3 5 72775341 to 77098356 4323015 QTL despair 3
Cep135 5 76588698 to 76646466 57768 + protein coding gene centrosomal protein 135
A730089K16Rik 5 76655929 to 76658355 2426 - unclassified gene RIKEN cDNA A730089K16 gene
Cpgi15996 5 76657303 to 76658486 1183 CpG island CpG island 15996
Tssr46728 5 76657649 to 76657669 20 + TSS region transcription start site region 46728
Tssr46729 5 76657673 to 76657722 49 + TSS region transcription start site region 46729
Tssr46730 5 76657727 to 76657732 5 + TSS region transcription start site region 46730
Tssr46731 5 76657753 to 76657764 11 + TSS region transcription start site region 46731
C530008M17Rik 5 76657779 to 76873554 215775 + protein coding gene RIKEN cDNA C530008M17 gene
Tssr51429 5 76658310 to 76658336 26 - TSS region transcription start site region 51429
Tssr51430 5 76658337 to 76658361 24 - TSS region transcription start site region 51430
Tssr51431 5 76658363 to 76658392 29 - TSS region transcription start site region 51431
Tssr46732 5 76677234 to 76677270 36 + TSS region transcription start site region 46732
Tssr46733 5 76677274 to 76677279 5 + TSS region transcription start site region 46733
Tssr46734 5 76677295 to 76677305 10 + TSS region transcription start site region 46734
Mdq16 5 76686563 to 76686563 0 QTL mammary ductal QTL 16
Gm7494 5 76742073 to 76742513 440 - pseudogene predicted gene 7494
Gm34369 5 76774789 to 76777408 2619 - lncRNA gene predicted gene, 34369
Tssr46735 5 76809873 to 76809889 16 + TSS region transcription start site region 46735
Tssr46736 5 76809964 to 76810010 46 + TSS region transcription start site region 46736
Tssr46737 5 76810012 to 76810057 45 + TSS region transcription start site region 46737
Tssr46738 5 76822354 to 76822418 64 + TSS region transcription start site region 46738
Tssr46739 5 76822473 to 76822481 8 + TSS region transcription start site region 46739
Tssr46740 5 76822493 to 76822504 11 + TSS region transcription start site region 46740
Tssr46741 5 76822524 to 76822541 17 + TSS region transcription start site region 46741
Tssr46742 5 76822557 to 76822571 14 + TSS region transcription start site region 46742
Tssr46743 5 76840597 to 76840637 40 + TSS region transcription start site region 46743
Tssr46744 5 76855050 to 76855061 11 + TSS region transcription start site region 46744
Tssr46745 5 76855490 to 76855491 1 + TSS region transcription start site region 46745
Cpgi15997 5 76856400 to 76858715 2315 CpG island CpG island 15997
Tssr46746 5 76856650 to 76856666 16 + TSS region transcription start site region 46746
Tssr46747 5 76856753 to 76856770 17 + TSS region transcription start site region 46747
Tssr51432 5 76858566 to 76858582 16 - TSS region transcription start site region 51432
Tssr46748 5 76858724 to 76858738 14 + TSS region transcription start site region 46748
Tssr46749 5 76858740 to 76858752 12 + TSS region transcription start site region 46749
Aasdh 5 76873659 to 76905514 31855 - protein coding gene aminoadipate-semialdehyde dehydrogenase
Cpgi15998 5 76876121 to 76876579 458 CpG island CpG island 15998
D5Mit306 5 76882159 to 76882252 93 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 306
Cpgi15999 5 76905103 to 76905977 874 CpG island CpG island 15999
Tssr51433 5 76905379 to 76905393 14 - TSS region transcription start site region 51433
Tssr51434 5 76905441 to 76905459 18 - TSS region transcription start site region 51434
Tssr51435 5 76905463 to 76905507 44 - TSS region transcription start site region 51435
Ppat 5 76913249 to 76951578 38329 - protein coding gene phosphoribosyl pyrophosphate amidotransferase
Tssr46750 5 76928344 to 76928376 32 + TSS region transcription start site region 46750
2310040G07Rik 5 76928368 to 76947758 19390 + antisense lncRNA gene RIKEN cDNA 2310040G07 gene
Gm42102 5 76931520 to 76938146 6626 + protein coding gene predicted gene, 42102
Cpgi16000 5 76950790 to 76952015 1225 CpG island CpG island 16000
Tssr51436 5 76951160 to 76951174 14 - TSS region transcription start site region 51436
Tssr51437 5 76951178 to 76951198 20 - TSS region transcription start site region 51437
Tssr51438 5 76951207 to 76951232 25 - TSS region transcription start site region 51438
Paics 5 76951308 to 76967507 16199 + protein coding gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
Tssr46751 5 76951325 to 76951363 38 + TSS region transcription start site region 46751
Tssr46752 5 76951383 to 76951394 11 + TSS region transcription start site region 46752
Tssr51439 5 76951560 to 76951589 29 - TSS region transcription start site region 51439
Tssr46753 5 76951627 to 76951638 11 + TSS region transcription start site region 46753
Tssr46754 5 76951716 to 76951795 79 + TSS region transcription start site region 46754
Tssr46755 5 76951799 to 76951811 12 + TSS region transcription start site region 46755
Tssr46756 5 76965939 to 76965942 3 + TSS region transcription start site region 46756
Tssr51440 5 76971483 to 76971487 4 - TSS region transcription start site region 51440
Cpgi16001 5 76974357 to 76975284 927 CpG island CpG island 16001
Tssr51441 5 76974593 to 76974636 43 - TSS region transcription start site region 51441
Tssr46757 5 76974692 to 76974727 35 + TSS region transcription start site region 46757
Srp72 5 76974701 to 76999935 25234 + protein coding gene signal recognition particle 72
Tssr46758 5 76995770 to 76995789 19 + TSS region transcription start site region 46758
Tssr46759 5 76995828 to 76995842 14 + TSS region transcription start site region 46759
Tssr46760 5 76995849 to 76995860 11 + TSS region transcription start site region 46760
Tssr46761 5 76995871 to 76995884 13 + TSS region transcription start site region 46761
Tssr46762 5 76998201 to 76998235 34 + TSS region transcription start site region 46762
Tssr46763 5 77001450 to 77001461 11 + TSS region transcription start site region 46763
Tssr46764 5 77001463 to 77001470 7 + TSS region transcription start site region 46764
Tssr46765 5 77001510 to 77001518 8 + TSS region transcription start site region 46765
Tssr46766 5 77001547 to 77001595 48 + TSS region transcription start site region 46766
Tssr46767 5 77001750 to 77001756 6 + TSS region transcription start site region 46767
Cpgi16002 5 77002729 to 77003063 334 CpG island CpG island 16002
Arl9 5 77004055 to 77010606 6551 + protein coding gene ADP-ribosylation factor-like 9
1700112J05Rik 5 77006449 to 77018863 12414 - lincRNA gene RIKEN cDNA 1700112J05 gene
D5Buc52 5 77007833 to 77007940 107 DNA segment DNA segment, Chr 5, Bucan 52
Cpgi16003 5 77015765 to 77016500 735 CpG island CpG island 16003
Tssr51442 5 77015929 to 77015940 11 - TSS region transcription start site region 51442
Tssr46768 5 77015982 to 77015995 13 + TSS region transcription start site region 46768
Thegl 5 77016023 to 77061529 45506 + protein coding gene theg spermatid protein like
Tssr46769 5 77016023 to 77016054 31 + TSS region transcription start site region 46769
Tssr51443 5 77018840 to 77018853 13 - TSS region transcription start site region 51443
Tssr51444 5 77018857 to 77018867 10 - TSS region transcription start site region 51444
Ogrq2 5 77027976 to 97510356 20482380 QTL overall growth rate QTL 2
Pwgrq15 5 77027976 to 97510356 20482380 QTL post-weaning growth rate QTL 15
Tssr46770 5 77037010 to 77037043 33 + TSS region transcription start site region 46770
Tssr46771 5 77037045 to 77037072 27 + TSS region transcription start site region 46771
Tssr46772 5 77037076 to 77037087 11 + TSS region transcription start site region 46772
Cpgi16004 5 77061349 to 77061611 262 CpG island CpG island 16004
Hopx 5 77086988 to 77115121 28133 - protein coding gene HOP homeobox
Cpgi16005 5 77094655 to 77095669 1014 CpG island CpG island 16005
Tssr51445 5 77095018 to 77095039 21 - TSS region transcription start site region 51445
Tssr51446 5 77095150 to 77095161 11 - TSS region transcription start site region 51446
Tssr51447 5 77095174 to 77095185 11 - TSS region transcription start site region 51447
Tssr51448 5 77095206 to 77095220 14 - TSS region transcription start site region 51448
Tssr51449 5 77095225 to 77095275 50 - TSS region transcription start site region 51449
Tssr1514 5 77095276 to 77095277 1 - TSS region transcription start site region 1514
Tssr51450 5 77095279 to 77095290 11 - TSS region transcription start site region 51450
Tssr46773 5 77097453 to 77097460 7 + TSS region transcription start site region 46773
D5Mit357 5 77098234 to 77098356 122 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 357
Listr1 5 77098234 to 77098356 122 QTL listeriosis resistance 1
Hopxos 5 77098830 to 77102313 3483 + antisense lncRNA gene HOP homeobox, opposite strand
Tssr46774 5 77098860 to 77098875 15 + TSS region transcription start site region 46774
Cpgi16006 5 77114815 to 77115042 227 CpG island CpG island 16006
Tssr51451 5 77114872 to 77114886 14 - TSS region transcription start site region 51451
Tssr51452 5 77114910 to 77114922 12 - TSS region transcription start site region 51452
Tssr51453 5 77115083 to 77115094 11 - TSS region transcription start site region 51453
Tssr51454 5 77115145 to 77115156 11 - TSS region transcription start site region 51454
Gm15831 5 77116810 to 77122348 5538 - lincRNA gene predicted gene 15831
Tssr46775 5 77126684 to 77126701 17 + TSS region transcription start site region 46775
Tssr51455 5 77134530 to 77134534 4 - TSS region transcription start site region 51455
Chaer1 5 77138471 to 77140252 1781 - lincRNA gene cardiac hypertrophy associated epigenetic regulator 1
Tssr51456 5 77140277 to 77140299 22 - TSS region transcription start site region 51456
Gm34598 5 77146097 to 77159173 13076 - lncRNA gene predicted gene, 34598
Tssr51457 5 77158892 to 77158931 39 - TSS region transcription start site region 51457
Cpgi16007 5 77167708 to 77167945 237 CpG island CpG island 16007
Spink2 5 77205107 to 77211471 6364 - protein coding gene serine peptidase inhibitor, Kazal type 2
Tssr51458 5 77205297 to 77205304 7 - TSS region transcription start site region 51458
Tssr46776 5 77205353 to 77205368 15 + TSS region transcription start site region 46776
Cpgi16008 5 77211054 to 77211638 584 CpG island CpG island 16008
Tssr51459 5 77211144 to 77211154 10 - TSS region transcription start site region 51459
Tssr51460 5 77211164 to 77211170 6 - TSS region transcription start site region 51460
Tssr51461 5 77211192 to 77211207 15 - TSS region transcription start site region 51461
Tssr51462 5 77211218 to 77211241 23 - TSS region transcription start site region 51462
Tssr51463 5 77211392 to 77211403 11 - TSS region transcription start site region 51463
Tssr51464 5 77211405 to 77211458 53 - TSS region transcription start site region 51464
Tssr51465 5 77211463 to 77211484 21 - TSS region transcription start site region 51465
Tssr51466 5 77216218 to 77216221 3 - TSS region transcription start site region 51466
Tssr51467 5 77216246 to 77216251 5 - TSS region transcription start site region 51467
Tssr51468 5 77216255 to 77216270 15 - TSS region transcription start site region 51468
Gm19060 5 77227378 to 77227950 572 + pseudogene predicted gene, 19060
Tssr51469 5 77246227 to 77246237 10 - TSS region transcription start site region 51469
Tssr51470 5 77246262 to 77246273 11 - TSS region transcription start site region 51470
D5Nds3 5 77255193 to 77255320 127 DNA segment DNA segment, Chr 5, Nuffield Department of Surgery 3
Ahl14 5 77255215 to 77255313 98 QTL age related hearing loss, early onset 14
D5Mit113 5 77255215 to 77255313 98 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 113