Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:75947116-76696156

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kdr 5 75932827 to 75978458 45631 - protein coding gene kinase insert domain protein receptor
Tssr51415 5 75967668 to 75967707 39 - TSS region transcription start site region 51415
Gm32727 5 75974502 to 76013212 38710 + lncRNA gene predicted gene, 32727
Cpgi15989 5 75977582 to 75978787 1205 CpG island CpG island 15989
Tssr51416 5 75978447 to 75978463 16 - TSS region transcription start site region 51416
Tssr51417 5 75979215 to 75979221 6 - TSS region transcription start site region 51417
Tssr46717 5 75981222 to 75981245 23 + TSS region transcription start site region 46717
D5Mit307 5 76000267 to 76000386 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 307
Gm24738 5 76006319 to 76006441 122 - rRNA gene predicted gene, 24738
Tssr46718 5 76016385 to 76016393 8 + TSS region transcription start site region 46718
Gm32780 5 76043098 to 76055899 12801 + lincRNA gene predicted gene, 32780
D5Mit202 5 76056430 to 76056578 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 202
Gm6051 5 76060412 to 76060763 351 - pseudogene predicted gene 6051
Cpgi15990 5 76139926 to 76140977 1051 CpG island CpG island 15990
Srd5a3 5 76140273 to 76155503 15230 + protein coding gene steroid 5 alpha-reductase 3
Tssr46719 5 76140298 to 76140317 19 + TSS region transcription start site region 46719
Tssr46720 5 76140711 to 76140725 14 + TSS region transcription start site region 46720
Gm33832 5 76141835 to 76147678 5843 - lncRNA gene predicted gene, 33832
Gm33938 5 76158260 to 76169219 10959 - lncRNA gene predicted gene, 33938
Tssr51418 5 76182490 to 76182498 8 - TSS region transcription start site region 51418
Tssr51419 5 76182507 to 76182523 16 - TSS region transcription start site region 51419
Cpgi15991 5 76183506 to 76184584 1078 CpG island CpG island 15991
Tssr1513 5 76183804 to 76183829 25 - TSS region transcription start site region 1513
Tmem165 5 76183880 to 76209244 25364 + protein coding gene transmembrane protein 165
Tssr46721 5 76183915 to 76183970 55 + TSS region transcription start site region 46721
Apc-ps1 5 76196625 to 76197094 469 + pseudogene adenomatosis polyposis coli, pseudogene 1
Tssr46722 5 76205863 to 76205878 15 + TSS region transcription start site region 46722
Clock 5 76209868 to 76304792 94924 - protein coding gene circadian locomotor output cycles kaput
Tssr51420 5 76231300 to 76231303 3 - TSS region transcription start site region 51420
Ube2n-ps1 5 76232612 to 76233070 458 - pseudogene ubiquitin-conjugating enzyme E2N, pseudogene 1
Gm43658 5 76297600 to 76301775 4175 - unclassified gene predicted gene 43658
Cpgi15992 5 76303546 to 76305383 1837 CpG island CpG island 15992
Tssr51421 5 76304474 to 76304507 33 - TSS region transcription start site region 51421
Tssr51422 5 76304518 to 76304551 33 - TSS region transcription start site region 51422
Tssr51423 5 76304731 to 76304790 59 - TSS region transcription start site region 51423
Gm7467 5 76304882 to 76305532 650 + antisense lncRNA gene predicted gene 7467
Tssr51424 5 76304956 to 76304993 37 - TSS region transcription start site region 51424
Pdcl2 5 76312116 to 76331156 19040 - protein coding gene phosducin-like 2
Tssr51425 5 76331088 to 76331099 11 - TSS region transcription start site region 51425
Tssr51426 5 76331102 to 76331142 40 - TSS region transcription start site region 51426
Tssr51427 5 76331150 to 76331161 11 - TSS region transcription start site region 51427
Tssr46723 5 76331184 to 76331197 13 + TSS region transcription start site region 46723
4930432L08Rik 5 76332539 to 76341890 9351 + unclassified non-coding RNA gene RIKEN cDNA 4930432L08 gene
Nmu 5 76333495 to 76363777 30282 - protein coding gene neuromedin U
Gm34175 5 76342586 to 76347729 5143 + lncRNA gene predicted gene, 34175
Cpgi15993 5 76363538 to 76364053 515 CpG island CpG island 15993
Tssr51428 5 76363787 to 76363791 4 - TSS region transcription start site region 51428
Gm42666 5 76410354 to 76410505 151 + pseudogene predicted gene 42666
Gm42665 5 76450701 to 76451774 1073 - pseudogene predicted gene 42665
D5Mit112 5 76454954 to 76455133 179 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 112
Lmr3a 5 76454954 to 76455133 179 QTL leishmaniasis resistance 3a
Lmr3b 5 76454954 to 76455133 179 QTL leishmaniasis resistance 3b
Lmr3c 5 76454954 to 76455133 179 QTL leishmaniasis resistance 3c
Lmr3d 5 76454954 to 76455133 179 QTL leishmaniasis resistance 3d
Gm7271 5 76484077 to 76516628 32551 + protein coding gene predicted gene 7271
Cpgi15994 5 76529130 to 76529766 636 CpG island CpG island 15994
Tssr46724 5 76529303 to 76529386 83 + TSS region transcription start site region 46724
Exoc1 5 76529311 to 76570294 40983 + protein coding gene exocyst complex component 1
Cpgi15995 5 76588391 to 76589294 903 CpG island CpG island 15995
Tssr46725 5 76588663 to 76588742 79 + TSS region transcription start site region 46725
Cep135 5 76588698 to 76646466 57768 + protein coding gene centrosomal protein 135
Tssr46726 5 76588787 to 76588803 16 + TSS region transcription start site region 46726
Tssr46727 5 76588815 to 76588837 22 + TSS region transcription start site region 46727
A730089K16Rik 5 76655929 to 76658355 2426 - unclassified gene RIKEN cDNA A730089K16 gene
Cpgi15996 5 76657303 to 76658486 1183 CpG island CpG island 15996
Tssr46728 5 76657649 to 76657669 20 + TSS region transcription start site region 46728
Tssr46729 5 76657673 to 76657722 49 + TSS region transcription start site region 46729
Tssr46730 5 76657727 to 76657732 5 + TSS region transcription start site region 46730
Tssr46731 5 76657753 to 76657764 11 + TSS region transcription start site region 46731
C530008M17Rik 5 76657779 to 76873554 215775 + protein coding gene RIKEN cDNA C530008M17 gene
Tssr51429 5 76658310 to 76658336 26 - TSS region transcription start site region 51429
Tssr51430 5 76658337 to 76658361 24 - TSS region transcription start site region 51430
Tssr51431 5 76658363 to 76658392 29 - TSS region transcription start site region 51431
Tssr46732 5 76677234 to 76677270 36 + TSS region transcription start site region 46732
Tssr46733 5 76677274 to 76677279 5 + TSS region transcription start site region 46733
Tssr46734 5 76677295 to 76677305 10 + TSS region transcription start site region 46734
Mdq16 5 76686563 to 76686563 0 QTL mammary ductal QTL 16