Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:75569502-76418212

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr51403 5 75569911 to 75569918 7 - TSS region transcription start site region 51403
Cpgi15985 5 75574450 to 75576068 1618 CpG island CpG island 15985
Tssr46701 5 75574986 to 75575001 15 + TSS region transcription start site region 46701
l5H1 5 75574987 to 98277030 22702043 heritable phenotypic marker lethal, Chr 5, Harwell 1
Kit 5 75574987 to 75656722 81735 + protein coding gene KIT proto-oncogene receptor tyrosine kinase
Tssr46702 5 75576094 to 75576101 7 + TSS region transcription start site region 46702
Tssr46703 5 75590325 to 75590334 9 + TSS region transcription start site region 46703
Tssr46704 5 75600310 to 75600349 39 + TSS region transcription start site region 46704
Tssr46705 5 75601574 to 75601578 4 + TSS region transcription start site region 46705
Tssr46706 5 75609389 to 75609398 9 + TSS region transcription start site region 46706
Tssr46707 5 75627429 to 75627432 3 + TSS region transcription start site region 46707
Tssr46708 5 75632635 to 75632640 5 + TSS region transcription start site region 46708
Tssr46709 5 75640938 to 75640967 29 + TSS region transcription start site region 46709
Tssr46710 5 75642466 to 75642467 1 + TSS region transcription start site region 46710
Tssr46711 5 75648578 to 75648585 7 + TSS region transcription start site region 46711
Gm32558 5 75675252 to 75688199 12947 + lncRNA gene predicted gene, 32558
Gm43101 5 75727605 to 75735967 8362 + lincRNA gene predicted gene 43101
Cpgi15986 5 75734774 to 75735006 232 CpG island CpG island 15986
Tssr46712 5 75734818 to 75734835 17 + TSS region transcription start site region 46712
Tssr46713 5 75734840 to 75734856 16 + TSS region transcription start site region 46713
Gm43102 5 75737882 to 75740205 2323 + unclassified gene predicted gene 43102
Gm43100 5 75753556 to 75758886 5330 - lincRNA gene predicted gene 43100
Tssr51404 5 75828478 to 75828491 13 - TSS region transcription start site region 51404
Tssr46714 5 75830441 to 75830452 11 + TSS region transcription start site region 46714
Tssr46715 5 75830455 to 75830471 16 + TSS region transcription start site region 46715
Tssr46716 5 75830550 to 75830587 37 + TSS region transcription start site region 46716
Gm19590 5 75833035 to 75835645 2610 - lincRNA gene predicted gene, 19590
Tssr51405 5 75835241 to 75835256 15 - TSS region transcription start site region 51405
Cpgi15987 5 75835568 to 75835819 251 CpG island CpG island 15987
Tssr51406 5 75835617 to 75835626 9 - TSS region transcription start site region 51406
Tssr51407 5 75835641 to 75835652 11 - TSS region transcription start site region 51407
Tssr51408 5 75835676 to 75835697 21 - TSS region transcription start site region 51408
Tssr51409 5 75835816 to 75835825 9 - TSS region transcription start site region 51409
Tssr51410 5 75835833 to 75835842 9 - TSS region transcription start site region 51410
Tssr51411 5 75835877 to 75835887 10 - TSS region transcription start site region 51411
Tssr51412 5 75835933 to 75835940 7 - TSS region transcription start site region 51412
Gm38180 5 75846089 to 75848210 2121 + unclassified gene predicted gene, 38180
Gm28865 5 75849238 to 75852958 3720 - lincRNA gene predicted gene 28865
Gm25374 5 75909827 to 75909927 100 + miRNA gene predicted gene, 25374
Kdr 5 75932827 to 75978458 45631 - protein coding gene kinase insert domain protein receptor
Tssr51413 5 75933663 to 75933667 4 - TSS region transcription start site region 51413
Cpgi15988 5 75933747 to 75934049 302 CpG island CpG island 15988
Tssr51414 5 75940790 to 75940794 4 - TSS region transcription start site region 51414
Tssr51415 5 75967668 to 75967707 39 - TSS region transcription start site region 51415
Gm32727 5 75974502 to 76013212 38710 + lncRNA gene predicted gene, 32727
Cpgi15989 5 75977582 to 75978787 1205 CpG island CpG island 15989
Tssr51416 5 75978447 to 75978463 16 - TSS region transcription start site region 51416
Tssr51417 5 75979215 to 75979221 6 - TSS region transcription start site region 51417
Tssr46717 5 75981222 to 75981245 23 + TSS region transcription start site region 46717
D5Mit307 5 76000267 to 76000386 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 307
Gm24738 5 76006319 to 76006441 122 - rRNA gene predicted gene, 24738
Tssr46718 5 76016385 to 76016393 8 + TSS region transcription start site region 46718
Gm32780 5 76043098 to 76055899 12801 + lincRNA gene predicted gene, 32780
D5Mit202 5 76056430 to 76056578 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 202
Gm6051 5 76060412 to 76060763 351 - pseudogene predicted gene 6051
Cpgi15990 5 76139926 to 76140977 1051 CpG island CpG island 15990
Srd5a3 5 76140273 to 76155503 15230 + protein coding gene steroid 5 alpha-reductase 3
Tssr46719 5 76140298 to 76140317 19 + TSS region transcription start site region 46719
Tssr46720 5 76140711 to 76140725 14 + TSS region transcription start site region 46720
Gm33832 5 76141835 to 76147678 5843 - lncRNA gene predicted gene, 33832
Gm33938 5 76158260 to 76169219 10959 - lncRNA gene predicted gene, 33938
Tssr51418 5 76182490 to 76182498 8 - TSS region transcription start site region 51418
Tssr51419 5 76182507 to 76182523 16 - TSS region transcription start site region 51419
Cpgi15991 5 76183506 to 76184584 1078 CpG island CpG island 15991
Tssr1513 5 76183804 to 76183829 25 - TSS region transcription start site region 1513
Tmem165 5 76183880 to 76209244 25364 + protein coding gene transmembrane protein 165
Tssr46721 5 76183915 to 76183970 55 + TSS region transcription start site region 46721
Apc-ps1 5 76196625 to 76197094 469 + pseudogene adenomatosis polyposis coli, pseudogene 1
Tssr46722 5 76205863 to 76205878 15 + TSS region transcription start site region 46722
Clock 5 76209868 to 76304792 94924 - protein coding gene circadian locomotor output cycles kaput
Tssr51420 5 76231300 to 76231303 3 - TSS region transcription start site region 51420
Ube2n-ps1 5 76232612 to 76233070 458 - pseudogene ubiquitin-conjugating enzyme E2N, pseudogene 1
Gm43658 5 76297600 to 76301775 4175 - unclassified gene predicted gene 43658
Cpgi15992 5 76303546 to 76305383 1837 CpG island CpG island 15992
Tssr51421 5 76304474 to 76304507 33 - TSS region transcription start site region 51421
Tssr51422 5 76304518 to 76304551 33 - TSS region transcription start site region 51422
Tssr51423 5 76304731 to 76304790 59 - TSS region transcription start site region 51423
Gm7467 5 76304882 to 76305532 650 + antisense lncRNA gene predicted gene 7467
Tssr51424 5 76304956 to 76304993 37 - TSS region transcription start site region 51424
Pdcl2 5 76312116 to 76331156 19040 - protein coding gene phosducin-like 2
Tssr51425 5 76331088 to 76331099 11 - TSS region transcription start site region 51425
Tssr51426 5 76331102 to 76331142 40 - TSS region transcription start site region 51426
Tssr51427 5 76331150 to 76331161 11 - TSS region transcription start site region 51427
Tssr46723 5 76331184 to 76331197 13 + TSS region transcription start site region 46723
4930432L08Rik 5 76332539 to 76341890 9351 + unclassified non-coding RNA gene RIKEN cDNA 4930432L08 gene
Nmu 5 76333495 to 76363777 30282 - protein coding gene neuromedin U
Gm34175 5 76342586 to 76347729 5143 + lncRNA gene predicted gene, 34175
Cpgi15993 5 76363538 to 76364053 515 CpG island CpG island 15993
Tssr51428 5 76363787 to 76363791 4 - TSS region transcription start site region 51428
Gm42666 5 76410354 to 76410505 151 + pseudogene predicted gene 42666