Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:74339734-75419735

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scfd2 5 74204816 to 74531742 326926 - protein coding gene Sec1 family domain containing 2
Gm32064 5 74309332 to 74359666 50334 + lncRNA gene predicted gene, 32064
Gm15982 5 74356583 to 74358419 1836 - pseudogene predicted gene 15982
6720475M21Rik 5 74367163 to 74369915 2752 - unclassified gene RIKEN cDNA 6720475M21 gene
Tssr46672 5 74386432 to 74386435 3 + TSS region transcription start site region 46672
Tssr51383 5 74395644 to 74395647 3 - TSS region transcription start site region 51383
Tssr46673 5 74402992 to 74402998 6 + TSS region transcription start site region 46673
Tssr51384 5 74405095 to 74405132 37 - TSS region transcription start site region 51384
Gm43167 5 74429500 to 74431105 1605 - unclassified gene predicted gene 43167
D5Jcs311 5 74435247 to 74435470 223 DNA segment DNA segment, Chr 5, John C. Schimenti 311
D5B6CS103 5 74492140 to 74492306 166 DNA segment DNA segment, Chr 5, B6CS 103
Cpgi15971 5 74530771 to 74531935 1164 CpG island CpG island 15971
Tssr51385 5 74531666 to 74531754 88 - TSS region transcription start site region 51385
Cpgi15972 5 74535309 to 74536151 842 CpG island CpG island 15972
Fip1l1 5 74535449 to 74598800 63351 + protein coding gene FIP1 like 1 (S. cerevisiae)
Tssr46674 5 74535466 to 74535524 58 + TSS region transcription start site region 46674
Tssr46675 5 74535535 to 74535558 23 + TSS region transcription start site region 46675
Tssr46676 5 74535641 to 74535691 50 + TSS region transcription start site region 46676
Tssr46677 5 74572493 to 74572510 17 + TSS region transcription start site region 46677
Gm43747 5 74575947 to 74577276 1329 + unclassified gene predicted gene 43747
Tssr46678 5 74581246 to 74581249 3 + TSS region transcription start site region 46678
Tssr46679 5 74581568 to 74581572 4 + TSS region transcription start site region 46679
Lnx1 5 74592447 to 74702912 110465 - protein coding gene ligand of numb-protein X 1
Tssr46680 5 74614502 to 74614503 1 + TSS region transcription start site region 46680
D5Jcs312 5 74626319 to 74626515 196 DNA segment DNA segment, Chr 5, John C. Schimenti 312
Gm32304 5 74647643 to 74658336 10693 + lncRNA gene predicted gene, 32304
Tssr1511 5 74647680 to 74647731 51 + TSS region transcription start site region 1511
Tssr51386 5 74677814 to 74677873 59 - TSS region transcription start site region 51386
Gm15984 5 74702454 to 74719238 16784 + antisense lncRNA gene predicted gene 15984
Tssr51387 5 74702854 to 74702886 32 - TSS region transcription start site region 51387
Tssr51388 5 74702891 to 74702914 23 - TSS region transcription start site region 51388
Tssr51389 5 74702953 to 74702966 13 - TSS region transcription start site region 51389
Tssr51390 5 74711084 to 74711100 16 - TSS region transcription start site region 51390
Gm15985 5 74731516 to 74734451 2935 - lincRNA gene predicted gene 15985
Gm42575 5 74749882 to 74754438 4556 + lincRNA gene predicted gene 42575
D5Jcs313 5 74800044 to 74800225 181 DNA segment DNA segment, Chr 5, John C. Schimenti 313
D5Mit135 5 74815713 to 74815951 238 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 135
Tssr51391 5 74879734 to 74879735 1 - TSS region transcription start site region 51391
Gm17906 5 74883338 to 74884115 777 + pseudogene predicted gene, 17906
Tssr1512 5 74922081 to 74922087 6 + TSS region transcription start site region 1512
Cpgi15973 5 74943983 to 74944321 338 CpG island CpG island 15973
Gm6116 5 74949194 to 74966368 17174 + lincRNA gene predicted gene 6116
D5Jpk5 5 74959351 to 74959459 108 DNA segment DNA segment, Chr 5, Japan, Kominami 5
Tssr46681 5 74979878 to 74979906 28 + TSS region transcription start site region 46681
Tssr51392 5 74983579 to 74983580 1 - TSS region transcription start site region 51392
Gm42577 5 74985856 to 74989066 3210 - unclassified gene predicted gene 42577
Tssr51393 5 75004344 to 75004354 10 - TSS region transcription start site region 51393
Chic2 5 75005004 to 75044641 39637 - protein coding gene cysteine-rich hydrophobic domain 2
Gm42576 5 75020236 to 75023081 2845 - unclassified gene predicted gene 42576
Tssr51394 5 75025023 to 75025026 3 - TSS region transcription start site region 51394
Tssr51395 5 75043183 to 75043201 18 - TSS region transcription start site region 51395
Tssr51396 5 75043257 to 75043263 6 - TSS region transcription start site region 51396
Cpgi15974 5 75043785 to 75045006 1221 CpG island CpG island 15974
Tssr51397 5 75044413 to 75044424 11 - TSS region transcription start site region 51397
Tssr51398 5 75044463 to 75044500 37 - TSS region transcription start site region 51398
Tssr51399 5 75044562 to 75044662 100 - TSS region transcription start site region 51399
Tssr51400 5 75044673 to 75044695 22 - TSS region transcription start site region 51400
Tssr51401 5 75044697 to 75044708 11 - TSS region transcription start site region 51401
Gm18593 5 75048489 to 75050035 1546 + pseudogene predicted gene, 18593
Cpgi15975 5 75067029 to 75067605 576 CpG island CpG island 15975
Cpgi15976 5 75071115 to 75071338 223 CpG island CpG island 15976
Cpgi15977 5 75075273 to 75076673 1400 CpG island CpG island 15977
Tssr46682 5 75075590 to 75075597 7 + TSS region transcription start site region 46682
Gsx2 5 75075601 to 75077893 2292 + protein coding gene GS homeobox 2
Cpgi15978 5 75076973 to 75077387 414 CpG island CpG island 15978
Cpgi15979 5 75085053 to 75085287 234 CpG island CpG island 15979
Gm2040 5 75108635 to 75108923 288 + pseudogene predicted gene 2040
Tssr46683 5 75110304 to 75110351 47 + TSS region transcription start site region 46683
Gm19583 5 75110321 to 75147107 36786 + lincRNA gene predicted gene, 19583
Tssr51402 5 75119744 to 75119747 3 - TSS region transcription start site region 51402
Olfr1401-ps1 5 75141349 to 75141558 209 - pseudogene olfactory receptor 1401, pseudogene 1
Cpgi15980 5 75148568 to 75148866 298 CpG island CpG island 15980
Cpgi15981 5 75151221 to 75151684 463 CpG island CpG island 15981
Tssr46684 5 75151380 to 75151400 20 + TSS region transcription start site region 46684
Tssr46685 5 75152159 to 75152186 27 + TSS region transcription start site region 46685
Tssr46686 5 75152274 to 75152297 23 + TSS region transcription start site region 46686
Pdgfra 5 75152292 to 75198215 45923 + protein coding gene platelet derived growth factor receptor, alpha polypeptide
Tssr46687 5 75152316 to 75152367 51 + TSS region transcription start site region 46687
Cpgi15982 5 75152801 to 75153962 1161 CpG island CpG island 15982
Gm42802 5 75153055 to 75153653 598 - antisense lncRNA gene predicted gene 42802
Tssr46688 5 75153522 to 75153541 19 + TSS region transcription start site region 46688
Tssr46689 5 75153581 to 75153609 28 + TSS region transcription start site region 46689
Dshv2 5 75154687 to 97871944 22717257 QTL dorsal hippocampal volume 2
Ph 5 75154687 to 75169980 15293 heritable phenotypic marker patch deletion region
D5Mit201 5 75154687 to 75154796 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 201
Gm42803 5 75154885 to 75155335 450 - unclassified gene predicted gene 42803
Tssr46690 5 75155437 to 75155480 43 + TSS region transcription start site region 46690
Cpgi15983 5 75155791 to 75156858 1067 CpG island CpG island 15983
Tssr46691 5 75155871 to 75155886 15 + TSS region transcription start site region 46691
Tssr46692 5 75155892 to 75155919 27 + TSS region transcription start site region 46692
Tssr46693 5 75155947 to 75155956 9 + TSS region transcription start site region 46693
Tssr46694 5 75163794 to 75163805 11 + TSS region transcription start site region 46694
Ahl7 5 75169841 to 75169980 139 QTL age related hearing loss 7
D5Mit235 5 75169841 to 75169980 139 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 235
Mir7025 5 75176831 to 75176904 73 + miRNA gene microRNA 7025
Tssr46695 5 75180088 to 75180108 20 + TSS region transcription start site region 46695
Tssr46696 5 75180110 to 75180126 16 + TSS region transcription start site region 46696
Tssr46697 5 75180134 to 75180138 4 + TSS region transcription start site region 46697
Tssr46698 5 75180182 to 75180193 11 + TSS region transcription start site region 46698
Cpgi15984 5 75195042 to 75195321 279 CpG island CpG island 15984
Tssr46699 5 75203722 to 75203726 4 + TSS region transcription start site region 46699
Gm42799 5 75246443 to 75246770 327 + pseudogene predicted gene 42799
Gm18345 5 75342443 to 75343832 1389 + pseudogene predicted gene, 18345
Gm22084 5 75372041 to 75372145 104 - snRNA gene predicted gene, 22084
Tssr46700 5 75378947 to 75378970 23 + TSS region transcription start site region 46700
Gm42800 5 75387775 to 75399372 11597 - lincRNA gene predicted gene 42800
Cia27 5 119880564 to 75154687 -44725877 QTL collagen induced arthritis QTL 27