Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:74195535-74875558

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15970 5 74194675 to 74195946 1271 CpG island CpG island 15970
Rasl11b 5 74195326 to 74199477 4151 + protein coding gene RAS-like, family 11, member B
D5Buc50 5 74202136 to 74202410 274 DNA segment DNA segment, Chr 5, Bucan 50
Scfd2 5 74204816 to 74531742 326926 - protein coding gene Sec1 family domain containing 2
D5Buc51 5 74236964 to 74237184 220 DNA segment DNA segment, Chr 5, Bucan 51
Gm42599 5 74249148 to 74249616 468 - unclassified gene predicted gene 42599
Tssr51381 5 74262684 to 74262707 23 - TSS region transcription start site region 51381
Tssr51382 5 74262710 to 74262722 12 - TSS region transcription start site region 51382
Gm32064 5 74309332 to 74359666 50334 + lncRNA gene predicted gene, 32064
Gm15981 5 74316578 to 74317034 456 - pseudogene predicted gene 15981
Tssr46671 5 74337702 to 74337709 7 + TSS region transcription start site region 46671
Gm15982 5 74356583 to 74358419 1836 - pseudogene predicted gene 15982
6720475M21Rik 5 74367163 to 74369915 2752 - unclassified gene RIKEN cDNA 6720475M21 gene
Tssr46672 5 74386432 to 74386435 3 + TSS region transcription start site region 46672
Tssr51383 5 74395644 to 74395647 3 - TSS region transcription start site region 51383
Tssr46673 5 74402992 to 74402998 6 + TSS region transcription start site region 46673
Tssr51384 5 74405095 to 74405132 37 - TSS region transcription start site region 51384
Gm43167 5 74429500 to 74431105 1605 - unclassified gene predicted gene 43167
D5Jcs311 5 74435247 to 74435470 223 DNA segment DNA segment, Chr 5, John C. Schimenti 311
D5B6CS103 5 74492140 to 74492306 166 DNA segment DNA segment, Chr 5, B6CS 103
Cpgi15971 5 74530771 to 74531935 1164 CpG island CpG island 15971
Tssr51385 5 74531666 to 74531754 88 - TSS region transcription start site region 51385
Cpgi15972 5 74535309 to 74536151 842 CpG island CpG island 15972
Fip1l1 5 74535449 to 74598800 63351 + protein coding gene FIP1 like 1 (S. cerevisiae)
Tssr46674 5 74535466 to 74535524 58 + TSS region transcription start site region 46674
Tssr46675 5 74535535 to 74535558 23 + TSS region transcription start site region 46675
Tssr46676 5 74535641 to 74535691 50 + TSS region transcription start site region 46676
Tssr46677 5 74572493 to 74572510 17 + TSS region transcription start site region 46677
Gm43747 5 74575947 to 74577276 1329 + unclassified gene predicted gene 43747
Tssr46678 5 74581246 to 74581249 3 + TSS region transcription start site region 46678
Tssr46679 5 74581568 to 74581572 4 + TSS region transcription start site region 46679
Lnx1 5 74592447 to 74702912 110465 - protein coding gene ligand of numb-protein X 1
Tssr46680 5 74614502 to 74614503 1 + TSS region transcription start site region 46680
D5Jcs312 5 74626319 to 74626515 196 DNA segment DNA segment, Chr 5, John C. Schimenti 312
Gm32304 5 74647643 to 74658336 10693 + lncRNA gene predicted gene, 32304
Tssr1511 5 74647680 to 74647731 51 + TSS region transcription start site region 1511
Tssr51386 5 74677814 to 74677873 59 - TSS region transcription start site region 51386
Gm15984 5 74702454 to 74719238 16784 + antisense lncRNA gene predicted gene 15984
Tssr51387 5 74702854 to 74702886 32 - TSS region transcription start site region 51387
Tssr51388 5 74702891 to 74702914 23 - TSS region transcription start site region 51388
Tssr51389 5 74702953 to 74702966 13 - TSS region transcription start site region 51389
Tssr51390 5 74711084 to 74711100 16 - TSS region transcription start site region 51390
Gm15985 5 74731516 to 74734451 2935 - lincRNA gene predicted gene 15985
Gm42575 5 74749882 to 74754438 4556 + lincRNA gene predicted gene 42575
D5Jcs313 5 74800044 to 74800225 181 DNA segment DNA segment, Chr 5, John C. Schimenti 313
D5Mit135 5 74815713 to 74815951 238 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 135
Recrq8 5 132500000 to 74300000 -58200000 QTL recombination rate in male meiosis QTL 8