Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:73651381-74243376

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15962 5 73650779 to 73651904 1125 CpG island CpG island 15962
Gm34902 5 73650980 to 73652470 1490 - lncRNA gene predicted gene, 34902
Spata18 5 73651365 to 73679484 28119 + protein coding gene spermatogenesis associated 18
Tssr46658 5 73651376 to 73651394 18 + TSS region transcription start site region 46658
Tssr51373 5 73651799 to 73651836 37 - TSS region transcription start site region 51373
Tssr46659 5 73651844 to 73651892 48 + TSS region transcription start site region 46659
Cpgi15963 5 73669357 to 73669872 515 CpG island CpG island 15963
Cpgi15964 5 73721977 to 73722182 205 CpG island CpG island 15964
Gm34960 5 73797525 to 73804674 7149 - lncRNA gene predicted gene, 34960
Cpgi15965 5 73822272 to 73822603 331 CpG island CpG island 15965
1700019F05Rik 5 73912896 to 73920421 7525 + lincRNA gene RIKEN cDNA 1700019F05 gene
D5B6CS40 5 73914563 to 73914732 169 DNA segment DNA segment, Chr 5, B6CS 40
D5Jcs309 5 73941688 to 73941910 222 DNA segment DNA segment, Chr 5, John C. Schimenti 309
Tssr46660 5 73946379 to 73946389 10 + TSS region transcription start site region 46660
C78283 5 73946381 to 73948376 1995 + lincRNA gene expressed sequence C78283
Tssr46661 5 73946902 to 73946909 7 + TSS region transcription start site region 46661
Tssr46662 5 73972814 to 73972817 3 + TSS region transcription start site region 46662
D5Jcs310 5 73990150 to 73990397 247 DNA segment DNA segment, Chr 5, John C. Schimenti 310
Usp46 5 73998726 to 74068411 69685 - protein coding gene ubiquitin specific peptidase 46
Tssr1509 5 74009028 to 74009042 14 - TSS region transcription start site region 1509
Tssr51374 5 74009169 to 74009189 20 - TSS region transcription start site region 51374
Tssr51375 5 74009425 to 74009465 40 - TSS region transcription start site region 51375
Usp46os1 5 74013381 to 74015335 1954 + antisense lncRNA gene ubiquitin specific peptidase 46, opposite strand 1
Tssr46663 5 74014195 to 74014209 14 + TSS region transcription start site region 46663
Tssr46664 5 74014211 to 74014226 15 + TSS region transcription start site region 46664
Tssr1510 5 74029210 to 74029221 11 - TSS region transcription start site region 1510
Tssr51376 5 74029238 to 74029262 24 - TSS region transcription start site region 51376
Cpgi15966 5 74032215 to 74032709 494 CpG island CpG island 15966
Tssr46665 5 74032264 to 74032273 9 + TSS region transcription start site region 46665
Usp46os2 5 74035742 to 74043285 7543 + lncRNA gene ubiquitin specific peptidase 46, opposite strand 2
Gm43417 5 74048299 to 74053505 5206 - unclassified gene predicted gene 43417
Gm43415 5 74060038 to 74060787 749 + unclassified gene predicted gene 43415
Tssr51377 5 74065662 to 74065675 13 - TSS region transcription start site region 51377
Tssr51378 5 74065736 to 74065758 22 - TSS region transcription start site region 51378
Cpgi15967 5 74067855 to 74068937 1082 CpG island CpG island 15967
Tssr51379 5 74068336 to 74068350 14 - TSS region transcription start site region 51379
Tssr51380 5 74068361 to 74068438 77 - TSS region transcription start site region 51380
Gm43416 5 74092137 to 74093151 1014 - unclassified gene predicted gene 43416
Cpgi15968 5 74092801 to 74093557 756 CpG island CpG island 15968
Tssr46666 5 74093061 to 74093072 11 + TSS region transcription start site region 46666
Tssr46667 5 74093075 to 74093100 25 + TSS region transcription start site region 46667
Dancr 5 74093083 to 74094336 1253 + lncRNA gene differentiation antagonizing non-protein coding RNA
Tssr46668 5 74093112 to 74093129 17 + TSS region transcription start site region 46668
Tssr46669 5 74093132 to 74093139 7 + TSS region transcription start site region 46669
Snora26 5 74093530 to 74093650 120 + snoRNA gene small nucleolar RNA, H/ACA box 26
Cpgi15969 5 74126426 to 74126672 246 CpG island CpG island 15969
Gm32002 5 74160683 to 74165284 4601 + lncRNA gene predicted gene, 32002
A330058E17Rik 5 74172161 to 74176050 3889 - unclassified gene RIKEN cDNA A330058E17 gene
Cpgi15970 5 74194675 to 74195946 1271 CpG island CpG island 15970
Tssr46670 5 74195281 to 74195294 13 + TSS region transcription start site region 46670
Rasl11b 5 74195326 to 74199477 4151 + protein coding gene RAS-like, family 11, member B
D5Buc50 5 74202136 to 74202410 274 DNA segment DNA segment, Chr 5, Bucan 50
Scfd2 5 74204816 to 74531742 326926 - protein coding gene Sec1 family domain containing 2
D5Buc51 5 74236964 to 74237184 220 DNA segment DNA segment, Chr 5, Bucan 51