Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:73262749-74017731

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm34411 5 73263429 to 73268986 5557 + lincRNA gene predicted gene, 34411
1700025M24Rik 5 73268580 to 73284184 15604 - lincRNA gene RIKEN cDNA 1700025M24 gene
Gm42734 5 73272872 to 73273749 877 + unclassified gene predicted gene 42734
Tssr51363 5 73284150 to 73284184 34 - TSS region transcription start site region 51363
Gm40316 5 73284233 to 73287542 3309 + lncRNA gene predicted gene, 40316
Tssr46634 5 73284239 to 73284248 9 + TSS region transcription start site region 46634
Tssr46635 5 73284264 to 73284273 9 + TSS region transcription start site region 46635
D5Mit58 5 73290520 to 73290634 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 58
Cpgi15956 5 73292539 to 73293279 740 CpG island CpG island 15956
Ociad1 5 73292784 to 73314069 21285 + protein coding gene OCIA domain containing 1
Tssr46636 5 73292794 to 73292819 25 + TSS region transcription start site region 46636
Tssr46637 5 73292821 to 73292846 25 + TSS region transcription start site region 46637
Tssr1508 5 73292864 to 73292875 11 + TSS region transcription start site region 1508
Tssr46638 5 73293316 to 73293319 3 + TSS region transcription start site region 46638
Tssr46639 5 73304613 to 73304637 24 + TSS region transcription start site region 46639
Tssr46640 5 73306664 to 73306677 13 + TSS region transcription start site region 46640
Gm42733 5 73308059 to 73308577 518 - unclassified gene predicted gene 42733
Gm42732 5 73311364 to 73312560 1196 + unclassified gene predicted gene 42732
Ociad2 5 73322198 to 73338947 16749 - protein coding gene OCIA domain containing 2
Cpgi15957 5 73338139 to 73338888 749 CpG island CpG island 15957
Tssr51364 5 73338554 to 73338576 22 - TSS region transcription start site region 51364
Tssr51365 5 73338580 to 73338640 60 - TSS region transcription start site region 51365
Cpgi15958 5 73338896 to 73339048 152 CpG island CpG island 15958
Tssr51366 5 73338973 to 73339005 32 - TSS region transcription start site region 51366
Tssr51367 5 73339888 to 73339894 6 - TSS region transcription start site region 51367
Gm34496 5 73348694 to 73363766 15072 + lncRNA gene predicted gene, 34496
Tssr46641 5 73380530 to 73380546 16 + TSS region transcription start site region 46641
Gm34583 5 73380560 to 73391102 10542 + lncRNA gene predicted gene, 34583
Tssr46642 5 73380582 to 73380592 10 + TSS region transcription start site region 46642
Gm35960 5 73396799 to 73397813 1014 - pseudogene predicted gene, 35960
Cpgi15959 5 73405982 to 73406647 665 CpG island CpG island 15959
Cwh43 5 73406075 to 73453435 47360 + protein coding gene cell wall biogenesis 43 C-terminal homolog
Tssr46643 5 73406218 to 73406268 50 + TSS region transcription start site region 46643
Gm43798 5 73459329 to 73459722 393 - unclassified gene predicted gene 43798
Gm15653 5 73476447 to 73477353 906 - pseudogene predicted gene 15653
Tssr46644 5 73481020 to 73481035 15 + TSS region transcription start site region 46644
Dcun1d4 5 73481027 to 73560794 79767 + protein coding gene DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
Tssr46645 5 73481051 to 73481062 11 + TSS region transcription start site region 46645
Cpgi15960 5 73490393 to 73492634 2241 CpG island CpG island 15960
Tssr46646 5 73491045 to 73491110 65 + TSS region transcription start site region 46646
Tssr46647 5 73502625 to 73502638 13 + TSS region transcription start site region 46647
Tssr46648 5 73502645 to 73502654 9 + TSS region transcription start site region 46648
Tssr46649 5 73502659 to 73502675 16 + TSS region transcription start site region 46649
Tssr46650 5 73502678 to 73502689 11 + TSS region transcription start site region 46650
Tssr46651 5 73557279 to 73557290 11 + TSS region transcription start site region 46651
Tssr46652 5 73557304 to 73557326 22 + TSS region transcription start site region 46652
Tssr46653 5 73558059 to 73558064 5 + TSS region transcription start site region 46653
Tssr46654 5 73558324 to 73558356 32 + TSS region transcription start site region 46654
Lrrc66 5 73606642 to 73632421 25779 - protein coding gene leucine rich repeat containing 66
Tssr51368 5 73630303 to 73630343 40 - TSS region transcription start site region 51368
Tssr51369 5 73630351 to 73630365 14 - TSS region transcription start site region 51369
Tssr46655 5 73632334 to 73632336 2 + TSS region transcription start site region 46655
Tssr51370 5 73632421 to 73632434 13 - TSS region transcription start site region 51370
Sgcb 5 73632749 to 73647731 14982 - protein coding gene sarcoglycan, beta (dystrophin-associated glycoprotein)
Gm43799 5 73647013 to 73647591 578 - unclassified gene predicted gene 43799
Cpgi15961 5 73647254 to 73648030 776 CpG island CpG island 15961
Tssr51371 5 73647711 to 73647718 7 - TSS region transcription start site region 51371
Tssr51372 5 73647720 to 73647754 34 - TSS region transcription start site region 51372
Cpgi15962 5 73650779 to 73651904 1125 CpG island CpG island 15962
Gm34902 5 73650980 to 73652470 1490 - lncRNA gene predicted gene, 34902
Tssr46656 5 73651331 to 73651344 13 + TSS region transcription start site region 46656
Tssr46657 5 73651346 to 73651369 23 + TSS region transcription start site region 46657
Spata18 5 73651365 to 73679484 28119 + protein coding gene spermatogenesis associated 18
Tssr46658 5 73651376 to 73651394 18 + TSS region transcription start site region 46658
Tssr51373 5 73651799 to 73651836 37 - TSS region transcription start site region 51373
Tssr46659 5 73651844 to 73651892 48 + TSS region transcription start site region 46659
Cpgi15963 5 73669357 to 73669872 515 CpG island CpG island 15963
Cpgi15964 5 73721977 to 73722182 205 CpG island CpG island 15964
Gm34960 5 73797525 to 73804674 7149 - lncRNA gene predicted gene, 34960
Cpgi15965 5 73822272 to 73822603 331 CpG island CpG island 15965
1700019F05Rik 5 73912896 to 73920421 7525 + lincRNA gene RIKEN cDNA 1700019F05 gene
D5B6CS40 5 73914563 to 73914732 169 DNA segment DNA segment, Chr 5, B6CS 40
D5Jcs309 5 73941688 to 73941910 222 DNA segment DNA segment, Chr 5, John C. Schimenti 309
Tssr46660 5 73946379 to 73946389 10 + TSS region transcription start site region 46660
C78283 5 73946381 to 73948376 1995 + lincRNA gene expressed sequence C78283
Tssr46661 5 73946902 to 73946909 7 + TSS region transcription start site region 46661
Tssr46662 5 73972814 to 73972817 3 + TSS region transcription start site region 46662
D5Jcs310 5 73990150 to 73990397 247 DNA segment DNA segment, Chr 5, John C. Schimenti 310
Usp46 5 73998726 to 74068411 69685 - protein coding gene ubiquitin specific peptidase 46
Tssr1509 5 74009028 to 74009042 14 - TSS region transcription start site region 1509
Tssr51374 5 74009169 to 74009189 20 - TSS region transcription start site region 51374
Tssr51375 5 74009425 to 74009465 40 - TSS region transcription start site region 51375
Usp46os1 5 74013381 to 74015335 1954 + antisense lncRNA gene ubiquitin specific peptidase 46, opposite strand 1
Tssr46663 5 74014195 to 74014209 14 + TSS region transcription start site region 46663
Tssr46664 5 74014211 to 74014226 15 + TSS region transcription start site region 46664