Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:73006379-74324512

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163 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15952 5 73006753 to 73007677 924 CpG island CpG island 15952
Tssr46629 5 73006897 to 73006916 19 + TSS region transcription start site region 46629
Slc10a4 5 73006904 to 73012955 6051 + protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 4
Tssr46630 5 73006922 to 73006937 15 + TSS region transcription start site region 46630
Cpgi15953 5 73013432 to 73014306 874 CpG island CpG island 15953
Gm15847 5 73013528 to 73017236 3708 + pseudogene predicted gene 15847
Gm42668 5 73015199 to 73017685 2486 + unclassified gene predicted gene 42668
Fryl 5 73020191 to 73256628 236437 - protein coding gene FRY like transcription coactivator
Tssr1507 5 73021998 to 73021999 1 + TSS region transcription start site region 1507
Tssr51342 5 73024655 to 73024658 3 - TSS region transcription start site region 51342
Tssr51343 5 73024806 to 73024811 5 - TSS region transcription start site region 51343
Gm42572 5 73041777 to 73045154 3377 - unclassified gene predicted gene 42572
Cpgi15954 5 73071441 to 73071603 162 CpG island CpG island 15954
Tssr51344 5 73100118 to 73100121 3 - TSS region transcription start site region 51344
Obq27 5 73128312 to 73128312 0 QTL obesity QTL 27
Tssr51345 5 73131432 to 73131437 5 - TSS region transcription start site region 51345
Tssr51346 5 73132948 to 73132967 19 - TSS region transcription start site region 51346
Tssr51347 5 73156370 to 73156390 20 - TSS region transcription start site region 51347
1700071G01Rik 5 73157014 to 73157884 870 + antisense lncRNA gene RIKEN cDNA 1700071G01 gene
Tssr51348 5 73168409 to 73168420 11 - TSS region transcription start site region 51348
Tssr51349 5 73173460 to 73173463 3 - TSS region transcription start site region 51349
Tssr51350 5 73175164 to 73175170 6 - TSS region transcription start site region 51350
Tssr51351 5 73180198 to 73180201 3 - TSS region transcription start site region 51351
Tssr51352 5 73182645 to 73182650 5 - TSS region transcription start site region 51352
Gm42571 5 73187954 to 73190417 2463 - unclassified gene predicted gene 42571
Tssr51353 5 73191836 to 73191847 11 - TSS region transcription start site region 51353
Tssr51354 5 73191848 to 73191922 74 - TSS region transcription start site region 51354
Tssr51355 5 73191927 to 73191932 5 - TSS region transcription start site region 51355
Tssr51356 5 73191948 to 73191961 13 - TSS region transcription start site region 51356
D5Mit356.3 5 73195916 to 73196032 116 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 356.3
D5Mit356 5 73196008 to 73196131 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 356
Tssr51357 5 73209632 to 73209635 3 - TSS region transcription start site region 51357
Gm17207 5 73210156 to 73212643 2487 - sense intronic lncRNA gene predicted gene 17207
Tssr51358 5 73212567 to 73212605 38 - TSS region transcription start site region 51358
Tssr51359 5 73212606 to 73212622 16 - TSS region transcription start site region 51359
Tssr51360 5 73212638 to 73212646 8 - TSS region transcription start site region 51360
Tssr46631 5 73230469 to 73230470 1 + TSS region transcription start site region 46631
D5Buc49 5 73254209 to 73254416 207 DNA segment DNA segment, Chr 5, Bucan 49
Cpgi15955 5 73255323 to 73256820 1497 CpG island CpG island 15955
Tssr51361 5 73256522 to 73256534 12 - TSS region transcription start site region 51361
Tssr51362 5 73256555 to 73256636 81 - TSS region transcription start site region 51362
Tssr46632 5 73256773 to 73256792 19 + TSS region transcription start site region 46632
Tssr46633 5 73256956 to 73256968 12 + TSS region transcription start site region 46633
Gm34411 5 73263429 to 73268986 5557 + lincRNA gene predicted gene, 34411
1700025M24Rik 5 73268580 to 73284184 15604 - lincRNA gene RIKEN cDNA 1700025M24 gene
Gm42734 5 73272872 to 73273749 877 + unclassified gene predicted gene 42734
Tssr51363 5 73284150 to 73284184 34 - TSS region transcription start site region 51363
Gm40316 5 73284233 to 73287542 3309 + lncRNA gene predicted gene, 40316
Tssr46634 5 73284239 to 73284248 9 + TSS region transcription start site region 46634
Tssr46635 5 73284264 to 73284273 9 + TSS region transcription start site region 46635
D5Mit58 5 73290520 to 73290634 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 58
Cpgi15956 5 73292539 to 73293279 740 CpG island CpG island 15956
Ociad1 5 73292784 to 73314069 21285 + protein coding gene OCIA domain containing 1
Tssr46636 5 73292794 to 73292819 25 + TSS region transcription start site region 46636
Tssr46637 5 73292821 to 73292846 25 + TSS region transcription start site region 46637
Tssr1508 5 73292864 to 73292875 11 + TSS region transcription start site region 1508
Tssr46638 5 73293316 to 73293319 3 + TSS region transcription start site region 46638
Tssr46639 5 73304613 to 73304637 24 + TSS region transcription start site region 46639
Tssr46640 5 73306664 to 73306677 13 + TSS region transcription start site region 46640
Gm42733 5 73308059 to 73308577 518 - unclassified gene predicted gene 42733
Gm42732 5 73311364 to 73312560 1196 + unclassified gene predicted gene 42732
Ociad2 5 73322198 to 73338947 16749 - protein coding gene OCIA domain containing 2
Cpgi15957 5 73338139 to 73338888 749 CpG island CpG island 15957
Tssr51364 5 73338554 to 73338576 22 - TSS region transcription start site region 51364
Tssr51365 5 73338580 to 73338640 60 - TSS region transcription start site region 51365
Cpgi15958 5 73338896 to 73339048 152 CpG island CpG island 15958
Tssr51366 5 73338973 to 73339005 32 - TSS region transcription start site region 51366
Tssr51367 5 73339888 to 73339894 6 - TSS region transcription start site region 51367
Gm34496 5 73348694 to 73363766 15072 + lncRNA gene predicted gene, 34496
Tssr46641 5 73380530 to 73380546 16 + TSS region transcription start site region 46641
Gm34583 5 73380560 to 73391102 10542 + lncRNA gene predicted gene, 34583
Tssr46642 5 73380582 to 73380592 10 + TSS region transcription start site region 46642
Gm35960 5 73396799 to 73397813 1014 - pseudogene predicted gene, 35960
Cpgi15959 5 73405982 to 73406647 665 CpG island CpG island 15959
Cwh43 5 73406075 to 73453435 47360 + protein coding gene cell wall biogenesis 43 C-terminal homolog
Tssr46643 5 73406218 to 73406268 50 + TSS region transcription start site region 46643
Gm43798 5 73459329 to 73459722 393 - unclassified gene predicted gene 43798
Gm15653 5 73476447 to 73477353 906 - pseudogene predicted gene 15653
Tssr46644 5 73481020 to 73481035 15 + TSS region transcription start site region 46644
Dcun1d4 5 73481027 to 73560794 79767 + protein coding gene DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
Tssr46645 5 73481051 to 73481062 11 + TSS region transcription start site region 46645
Cpgi15960 5 73490393 to 73492634 2241 CpG island CpG island 15960
Tssr46646 5 73491045 to 73491110 65 + TSS region transcription start site region 46646
Tssr46647 5 73502625 to 73502638 13 + TSS region transcription start site region 46647
Tssr46648 5 73502645 to 73502654 9 + TSS region transcription start site region 46648
Tssr46649 5 73502659 to 73502675 16 + TSS region transcription start site region 46649
Tssr46650 5 73502678 to 73502689 11 + TSS region transcription start site region 46650
Tssr46651 5 73557279 to 73557290 11 + TSS region transcription start site region 46651
Tssr46652 5 73557304 to 73557326 22 + TSS region transcription start site region 46652
Tssr46653 5 73558059 to 73558064 5 + TSS region transcription start site region 46653
Tssr46654 5 73558324 to 73558356 32 + TSS region transcription start site region 46654
Lrrc66 5 73606642 to 73632421 25779 - protein coding gene leucine rich repeat containing 66
Tssr51368 5 73630303 to 73630343 40 - TSS region transcription start site region 51368
Tssr51369 5 73630351 to 73630365 14 - TSS region transcription start site region 51369
Tssr46655 5 73632334 to 73632336 2 + TSS region transcription start site region 46655
Tssr51370 5 73632421 to 73632434 13 - TSS region transcription start site region 51370
Sgcb 5 73632749 to 73647731 14982 - protein coding gene sarcoglycan, beta (dystrophin-associated glycoprotein)
Gm43799 5 73647013 to 73647591 578 - unclassified gene predicted gene 43799
Cpgi15961 5 73647254 to 73648030 776 CpG island CpG island 15961
Tssr51371 5 73647711 to 73647718 7 - TSS region transcription start site region 51371
Tssr51372 5 73647720 to 73647754 34 - TSS region transcription start site region 51372
Cpgi15962 5 73650779 to 73651904 1125 CpG island CpG island 15962
Gm34902 5 73650980 to 73652470 1490 - lncRNA gene predicted gene, 34902
Tssr46656 5 73651331 to 73651344 13 + TSS region transcription start site region 46656
Tssr46657 5 73651346 to 73651369 23 + TSS region transcription start site region 46657
Spata18 5 73651365 to 73679484 28119 + protein coding gene spermatogenesis associated 18
Tssr46658 5 73651376 to 73651394 18 + TSS region transcription start site region 46658
Tssr51373 5 73651799 to 73651836 37 - TSS region transcription start site region 51373
Tssr46659 5 73651844 to 73651892 48 + TSS region transcription start site region 46659
Cpgi15963 5 73669357 to 73669872 515 CpG island CpG island 15963
Cpgi15964 5 73721977 to 73722182 205 CpG island CpG island 15964
Gm34960 5 73797525 to 73804674 7149 - lncRNA gene predicted gene, 34960
Cpgi15965 5 73822272 to 73822603 331 CpG island CpG island 15965
1700019F05Rik 5 73912896 to 73920421 7525 + lincRNA gene RIKEN cDNA 1700019F05 gene
D5B6CS40 5 73914563 to 73914732 169 DNA segment DNA segment, Chr 5, B6CS 40
D5Jcs309 5 73941688 to 73941910 222 DNA segment DNA segment, Chr 5, John C. Schimenti 309
Tssr46660 5 73946379 to 73946389 10 + TSS region transcription start site region 46660
C78283 5 73946381 to 73948376 1995 + lincRNA gene expressed sequence C78283
Tssr46661 5 73946902 to 73946909 7 + TSS region transcription start site region 46661
Tssr46662 5 73972814 to 73972817 3 + TSS region transcription start site region 46662
D5Jcs310 5 73990150 to 73990397 247 DNA segment DNA segment, Chr 5, John C. Schimenti 310
Usp46 5 73998726 to 74068411 69685 - protein coding gene ubiquitin specific peptidase 46
Tssr1509 5 74009028 to 74009042 14 - TSS region transcription start site region 1509
Tssr51374 5 74009169 to 74009189 20 - TSS region transcription start site region 51374
Tssr51375 5 74009425 to 74009465 40 - TSS region transcription start site region 51375
Usp46os1 5 74013381 to 74015335 1954 + antisense lncRNA gene ubiquitin specific peptidase 46, opposite strand 1
Tssr46663 5 74014195 to 74014209 14 + TSS region transcription start site region 46663
Tssr46664 5 74014211 to 74014226 15 + TSS region transcription start site region 46664
Tssr1510 5 74029210 to 74029221 11 - TSS region transcription start site region 1510
Tssr51376 5 74029238 to 74029262 24 - TSS region transcription start site region 51376
Cpgi15966 5 74032215 to 74032709 494 CpG island CpG island 15966
Tssr46665 5 74032264 to 74032273 9 + TSS region transcription start site region 46665
Usp46os2 5 74035742 to 74043285 7543 + lncRNA gene ubiquitin specific peptidase 46, opposite strand 2
Gm43417 5 74048299 to 74053505 5206 - unclassified gene predicted gene 43417
Gm43415 5 74060038 to 74060787 749 + unclassified gene predicted gene 43415
Tssr51377 5 74065662 to 74065675 13 - TSS region transcription start site region 51377
Tssr51378 5 74065736 to 74065758 22 - TSS region transcription start site region 51378
Cpgi15967 5 74067855 to 74068937 1082 CpG island CpG island 15967
Tssr51379 5 74068336 to 74068350 14 - TSS region transcription start site region 51379
Tssr51380 5 74068361 to 74068438 77 - TSS region transcription start site region 51380
Gm43416 5 74092137 to 74093151 1014 - unclassified gene predicted gene 43416
Cpgi15968 5 74092801 to 74093557 756 CpG island CpG island 15968
Tssr46666 5 74093061 to 74093072 11 + TSS region transcription start site region 46666
Tssr46667 5 74093075 to 74093100 25 + TSS region transcription start site region 46667
Dancr 5 74093083 to 74094336 1253 + lncRNA gene differentiation antagonizing non-protein coding RNA
Tssr46668 5 74093112 to 74093129 17 + TSS region transcription start site region 46668
Tssr46669 5 74093132 to 74093139 7 + TSS region transcription start site region 46669
Snora26 5 74093530 to 74093650 120 + snoRNA gene small nucleolar RNA, H/ACA box 26
Cpgi15969 5 74126426 to 74126672 246 CpG island CpG island 15969
Gm32002 5 74160683 to 74165284 4601 + lncRNA gene predicted gene, 32002
A330058E17Rik 5 74172161 to 74176050 3889 - unclassified gene RIKEN cDNA A330058E17 gene
Cpgi15970 5 74194675 to 74195946 1271 CpG island CpG island 15970
Tssr46670 5 74195281 to 74195294 13 + TSS region transcription start site region 46670
Rasl11b 5 74195326 to 74199477 4151 + protein coding gene RAS-like, family 11, member B
D5Buc50 5 74202136 to 74202410 274 DNA segment DNA segment, Chr 5, Bucan 50
Scfd2 5 74204816 to 74531742 326926 - protein coding gene Sec1 family domain containing 2
D5Buc51 5 74236964 to 74237184 220 DNA segment DNA segment, Chr 5, Bucan 51
Gm42599 5 74249148 to 74249616 468 - unclassified gene predicted gene 42599
Tssr51381 5 74262684 to 74262707 23 - TSS region transcription start site region 51381
Tssr51382 5 74262710 to 74262722 12 - TSS region transcription start site region 51382
Gm32064 5 74309332 to 74359666 50334 + lncRNA gene predicted gene, 32064
Gm15981 5 74316578 to 74317034 456 - pseudogene predicted gene 15981
Recrq8 5 132500000 to 74300000 -58200000 QTL recombination rate in male meiosis QTL 8