Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:72976773-73536792

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slain2 5 72914362 to 72978841 64479 + protein coding gene SLAIN motif family, member 2
Cpgi15952 5 73006753 to 73007677 924 CpG island CpG island 15952
Tssr46629 5 73006897 to 73006916 19 + TSS region transcription start site region 46629
Slc10a4 5 73006904 to 73012955 6051 + protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 4
Tssr46630 5 73006922 to 73006937 15 + TSS region transcription start site region 46630
Cpgi15953 5 73013432 to 73014306 874 CpG island CpG island 15953
Gm15847 5 73013528 to 73017236 3708 + pseudogene predicted gene 15847
Gm42668 5 73015199 to 73017685 2486 + unclassified gene predicted gene 42668
Fryl 5 73020191 to 73256628 236437 - protein coding gene FRY like transcription coactivator
Tssr1507 5 73021998 to 73021999 1 + TSS region transcription start site region 1507
Tssr51342 5 73024655 to 73024658 3 - TSS region transcription start site region 51342
Tssr51343 5 73024806 to 73024811 5 - TSS region transcription start site region 51343
Gm42572 5 73041777 to 73045154 3377 - unclassified gene predicted gene 42572
Cpgi15954 5 73071441 to 73071603 162 CpG island CpG island 15954
Tssr51344 5 73100118 to 73100121 3 - TSS region transcription start site region 51344
Obq27 5 73128312 to 73128312 0 QTL obesity QTL 27
Tssr51345 5 73131432 to 73131437 5 - TSS region transcription start site region 51345
Tssr51346 5 73132948 to 73132967 19 - TSS region transcription start site region 51346
Tssr51347 5 73156370 to 73156390 20 - TSS region transcription start site region 51347
1700071G01Rik 5 73157014 to 73157884 870 + antisense lncRNA gene RIKEN cDNA 1700071G01 gene
Tssr51348 5 73168409 to 73168420 11 - TSS region transcription start site region 51348
Tssr51349 5 73173460 to 73173463 3 - TSS region transcription start site region 51349
Tssr51350 5 73175164 to 73175170 6 - TSS region transcription start site region 51350
Tssr51351 5 73180198 to 73180201 3 - TSS region transcription start site region 51351
Tssr51352 5 73182645 to 73182650 5 - TSS region transcription start site region 51352
Gm42571 5 73187954 to 73190417 2463 - unclassified gene predicted gene 42571
Tssr51353 5 73191836 to 73191847 11 - TSS region transcription start site region 51353
Tssr51354 5 73191848 to 73191922 74 - TSS region transcription start site region 51354
Tssr51355 5 73191927 to 73191932 5 - TSS region transcription start site region 51355
Tssr51356 5 73191948 to 73191961 13 - TSS region transcription start site region 51356
D5Mit356.3 5 73195916 to 73196032 116 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 356.3
D5Mit356 5 73196008 to 73196131 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 356
Tssr51357 5 73209632 to 73209635 3 - TSS region transcription start site region 51357
Gm17207 5 73210156 to 73212643 2487 - sense intronic lncRNA gene predicted gene 17207
Tssr51358 5 73212567 to 73212605 38 - TSS region transcription start site region 51358
Tssr51359 5 73212606 to 73212622 16 - TSS region transcription start site region 51359
Tssr51360 5 73212638 to 73212646 8 - TSS region transcription start site region 51360
Tssr46631 5 73230469 to 73230470 1 + TSS region transcription start site region 46631
D5Buc49 5 73254209 to 73254416 207 DNA segment DNA segment, Chr 5, Bucan 49
Cpgi15955 5 73255323 to 73256820 1497 CpG island CpG island 15955
Tssr51361 5 73256522 to 73256534 12 - TSS region transcription start site region 51361
Tssr51362 5 73256555 to 73256636 81 - TSS region transcription start site region 51362
Tssr46632 5 73256773 to 73256792 19 + TSS region transcription start site region 46632
Tssr46633 5 73256956 to 73256968 12 + TSS region transcription start site region 46633
Gm34411 5 73263429 to 73268986 5557 + lincRNA gene predicted gene, 34411
1700025M24Rik 5 73268580 to 73284184 15604 - lincRNA gene RIKEN cDNA 1700025M24 gene
Gm42734 5 73272872 to 73273749 877 + unclassified gene predicted gene 42734
Tssr51363 5 73284150 to 73284184 34 - TSS region transcription start site region 51363
Gm40316 5 73284233 to 73287542 3309 + lncRNA gene predicted gene, 40316
Tssr46634 5 73284239 to 73284248 9 + TSS region transcription start site region 46634
Tssr46635 5 73284264 to 73284273 9 + TSS region transcription start site region 46635
D5Mit58 5 73290520 to 73290634 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 58
Cpgi15956 5 73292539 to 73293279 740 CpG island CpG island 15956
Ociad1 5 73292784 to 73314069 21285 + protein coding gene OCIA domain containing 1
Tssr46636 5 73292794 to 73292819 25 + TSS region transcription start site region 46636
Tssr46637 5 73292821 to 73292846 25 + TSS region transcription start site region 46637
Tssr1508 5 73292864 to 73292875 11 + TSS region transcription start site region 1508
Tssr46638 5 73293316 to 73293319 3 + TSS region transcription start site region 46638
Tssr46639 5 73304613 to 73304637 24 + TSS region transcription start site region 46639
Tssr46640 5 73306664 to 73306677 13 + TSS region transcription start site region 46640
Gm42733 5 73308059 to 73308577 518 - unclassified gene predicted gene 42733
Gm42732 5 73311364 to 73312560 1196 + unclassified gene predicted gene 42732
Ociad2 5 73322198 to 73338947 16749 - protein coding gene OCIA domain containing 2
Cpgi15957 5 73338139 to 73338888 749 CpG island CpG island 15957
Tssr51364 5 73338554 to 73338576 22 - TSS region transcription start site region 51364
Tssr51365 5 73338580 to 73338640 60 - TSS region transcription start site region 51365
Cpgi15958 5 73338896 to 73339048 152 CpG island CpG island 15958
Tssr51366 5 73338973 to 73339005 32 - TSS region transcription start site region 51366
Tssr51367 5 73339888 to 73339894 6 - TSS region transcription start site region 51367
Gm34496 5 73348694 to 73363766 15072 + lncRNA gene predicted gene, 34496
Tssr46641 5 73380530 to 73380546 16 + TSS region transcription start site region 46641
Gm34583 5 73380560 to 73391102 10542 + lncRNA gene predicted gene, 34583
Tssr46642 5 73380582 to 73380592 10 + TSS region transcription start site region 46642
Gm35960 5 73396799 to 73397813 1014 - pseudogene predicted gene, 35960
Cpgi15959 5 73405982 to 73406647 665 CpG island CpG island 15959
Cwh43 5 73406075 to 73453435 47360 + protein coding gene cell wall biogenesis 43 C-terminal homolog
Tssr46643 5 73406218 to 73406268 50 + TSS region transcription start site region 46643
Gm43798 5 73459329 to 73459722 393 - unclassified gene predicted gene 43798
Gm15653 5 73476447 to 73477353 906 - pseudogene predicted gene 15653
Tssr46644 5 73481020 to 73481035 15 + TSS region transcription start site region 46644
Dcun1d4 5 73481027 to 73560794 79767 + protein coding gene DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
Tssr46645 5 73481051 to 73481062 11 + TSS region transcription start site region 46645
Cpgi15960 5 73490393 to 73492634 2241 CpG island CpG island 15960
Tssr46646 5 73491045 to 73491110 65 + TSS region transcription start site region 46646
Tssr46647 5 73502625 to 73502638 13 + TSS region transcription start site region 46647
Tssr46648 5 73502645 to 73502654 9 + TSS region transcription start site region 46648
Tssr46649 5 73502659 to 73502675 16 + TSS region transcription start site region 46649
Tssr46650 5 73502678 to 73502689 11 + TSS region transcription start site region 46650