Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:72871777-73215154

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr46620 5 72875879 to 72875884 5 + TSS region transcription start site region 46620
Tssr46621 5 72902586 to 72902617 31 + TSS region transcription start site region 46621
Tssr46622 5 72905049 to 72905055 6 + TSS region transcription start site region 46622
Gm9870 5 72912587 to 72914942 2355 - pseudogene predicted gene 9870
Cpgi15950 5 72913781 to 72915594 1813 CpG island CpG island 15950
Tssr51340 5 72914098 to 72914113 15 - TSS region transcription start site region 51340
Tssr51341 5 72914128 to 72914142 14 - TSS region transcription start site region 51341
Tssr46623 5 72914264 to 72914303 39 + TSS region transcription start site region 46623
Tssr46624 5 72914307 to 72914349 42 + TSS region transcription start site region 46624
Tssr46625 5 72914352 to 72914383 31 + TSS region transcription start site region 46625
Slain2 5 72914362 to 72978841 64479 + protein coding gene SLAIN motif family, member 2
Tssr46626 5 72914411 to 72914476 65 + TSS region transcription start site region 46626
Tssr46627 5 72914507 to 72914520 13 + TSS region transcription start site region 46627
Tssr46628 5 72914554 to 72914565 11 + TSS region transcription start site region 46628
Cpgi15951 5 72932855 to 72933219 364 CpG island CpG island 15951
Gm10135 5 72965808 to 72974702 8894 - protein coding gene predicted gene 10135
Gm24776 5 72971179 to 72971264 85 - snRNA gene predicted gene, 24776
Cpgi15952 5 73006753 to 73007677 924 CpG island CpG island 15952
Tssr46629 5 73006897 to 73006916 19 + TSS region transcription start site region 46629
Slc10a4 5 73006904 to 73012955 6051 + protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 4
Tssr46630 5 73006922 to 73006937 15 + TSS region transcription start site region 46630
Cpgi15953 5 73013432 to 73014306 874 CpG island CpG island 15953
Gm15847 5 73013528 to 73017236 3708 + pseudogene predicted gene 15847
Gm42668 5 73015199 to 73017685 2486 + unclassified gene predicted gene 42668
Fryl 5 73020191 to 73256628 236437 - protein coding gene FRY like transcription coactivator
Tssr1507 5 73021998 to 73021999 1 + TSS region transcription start site region 1507
Tssr51342 5 73024655 to 73024658 3 - TSS region transcription start site region 51342
Tssr51343 5 73024806 to 73024811 5 - TSS region transcription start site region 51343
Gm42572 5 73041777 to 73045154 3377 - unclassified gene predicted gene 42572
Cpgi15954 5 73071441 to 73071603 162 CpG island CpG island 15954
Tssr51344 5 73100118 to 73100121 3 - TSS region transcription start site region 51344
Obq27 5 73128312 to 73128312 0 QTL obesity QTL 27
Tssr51345 5 73131432 to 73131437 5 - TSS region transcription start site region 51345
Tssr51346 5 73132948 to 73132967 19 - TSS region transcription start site region 51346
Tssr51347 5 73156370 to 73156390 20 - TSS region transcription start site region 51347
1700071G01Rik 5 73157014 to 73157884 870 + antisense lncRNA gene RIKEN cDNA 1700071G01 gene
Tssr51348 5 73168409 to 73168420 11 - TSS region transcription start site region 51348
Tssr51349 5 73173460 to 73173463 3 - TSS region transcription start site region 51349
Tssr51350 5 73175164 to 73175170 6 - TSS region transcription start site region 51350
Tssr51351 5 73180198 to 73180201 3 - TSS region transcription start site region 51351
Tssr51352 5 73182645 to 73182650 5 - TSS region transcription start site region 51352
Gm42571 5 73187954 to 73190417 2463 - unclassified gene predicted gene 42571
Tssr51353 5 73191836 to 73191847 11 - TSS region transcription start site region 51353
Tssr51354 5 73191848 to 73191922 74 - TSS region transcription start site region 51354
Tssr51355 5 73191927 to 73191932 5 - TSS region transcription start site region 51355
Tssr51356 5 73191948 to 73191961 13 - TSS region transcription start site region 51356
D5Mit356.3 5 73195916 to 73196032 116 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 356.3
D5Mit356 5 73196008 to 73196131 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 356
Tssr51357 5 73209632 to 73209635 3 - TSS region transcription start site region 51357
Gm17207 5 73210156 to 73212643 2487 - sense intronic lncRNA gene predicted gene 17207
Tssr51358 5 73212567 to 73212605 38 - TSS region transcription start site region 51358
Tssr51359 5 73212606 to 73212622 16 - TSS region transcription start site region 51359
Tssr51360 5 73212638 to 73212646 8 - TSS region transcription start site region 51360