Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:72633580-73919184

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172 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cnga1 5 72603696 to 72642752 39056 - protein coding gene cyclic nucleotide gated channel alpha 1
Tssr46615 5 72635004 to 72635038 34 + TSS region transcription start site region 46615
Tssr51318 5 72636206 to 72636218 12 - TSS region transcription start site region 51318
Tssr51319 5 72636227 to 72636236 9 - TSS region transcription start site region 51319
Tssr51320 5 72642725 to 72642749 24 - TSS region transcription start site region 51320
Tssr51321 5 72642758 to 72642766 8 - TSS region transcription start site region 51321
Tssr46616 5 72644409 to 72644418 9 + TSS region transcription start site region 46616
4933408A14Rik 5 72644410 to 72646552 2142 + lincRNA gene RIKEN cDNA 4933408A14 gene
Cpgi15948 5 72647330 to 72648388 1058 CpG island CpG island 15948
Tssr51322 5 72647667 to 72647683 16 - TSS region transcription start site region 51322
Tssr46617 5 72647779 to 72647801 22 + TSS region transcription start site region 46617
Nipal1 5 72647796 to 72671078 23282 + protein coding gene NIPA-like domain containing 1
Tssr46618 5 72647810 to 72647853 43 + TSS region transcription start site region 46618
D5Buc48 5 72651840 to 72652095 255 DNA segment DNA segment, Chr 5, Bucan 48
Tssr51323 5 72675285 to 72675286 1 - TSS region transcription start site region 51323
Txk 5 72695978 to 72752777 56799 - protein coding gene TXK tyrosine kinase
Gm43717 5 72726062 to 72726371 309 + pseudogene predicted gene 43717
Tssr51324 5 72736540 to 72736575 35 - TSS region transcription start site region 51324
Tssr51325 5 72736598 to 72736610 12 - TSS region transcription start site region 51325
D5Nds2 5 72750852 to 72751015 163 DNA segment DNA segment, Chr 5, Nuffield Department of Surgery 2
Tssr51326 5 72752732 to 72752762 30 - TSS region transcription start site region 51326
Tssr51327 5 72752763 to 72752784 21 - TSS region transcription start site region 51327
Tssr51328 5 72752788 to 72752797 9 - TSS region transcription start site region 51328
Tec 5 72755716 to 72868483 112767 - protein coding gene tec protein tyrosine kinase
Tssr51329 5 72763712 to 72763734 22 - TSS region transcription start site region 51329
Tssr51330 5 72763743 to 72763779 36 - TSS region transcription start site region 51330
Tssr51331 5 72763790 to 72763803 13 - TSS region transcription start site region 51331
Tssr51332 5 72774943 to 72774954 11 - TSS region transcription start site region 51332
D5Mit134 5 72775341 to 72775450 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 134
Desp3 5 72775341 to 77098356 4323015 QTL despair 3
Tssr46619 5 72803097 to 72803100 3 + TSS region transcription start site region 46619
Gm43499 5 72809968 to 72812074 2106 - unclassified gene predicted gene 43499
Tssr51333 5 72813023 to 72813070 47 - TSS region transcription start site region 51333
Tssr51334 5 72813954 to 72813966 12 - TSS region transcription start site region 51334
Tssr51335 5 72840497 to 72840502 5 - TSS region transcription start site region 51335
Tssr51336 5 72846430 to 72846469 39 - TSS region transcription start site region 51336
Tssr51337 5 72852775 to 72852782 7 - TSS region transcription start site region 51337
Cpgi15949 5 72868023 to 72868820 797 CpG island CpG island 15949
Tssr51338 5 72868431 to 72868451 20 - TSS region transcription start site region 51338
Tssr51339 5 72868471 to 72868474 3 - TSS region transcription start site region 51339
Tssr46620 5 72875879 to 72875884 5 + TSS region transcription start site region 46620
Tssr46621 5 72902586 to 72902617 31 + TSS region transcription start site region 46621
Tssr46622 5 72905049 to 72905055 6 + TSS region transcription start site region 46622
Gm9870 5 72912587 to 72914942 2355 - pseudogene predicted gene 9870
Cpgi15950 5 72913781 to 72915594 1813 CpG island CpG island 15950
Tssr51340 5 72914098 to 72914113 15 - TSS region transcription start site region 51340
Tssr51341 5 72914128 to 72914142 14 - TSS region transcription start site region 51341
Tssr46623 5 72914264 to 72914303 39 + TSS region transcription start site region 46623
Tssr46624 5 72914307 to 72914349 42 + TSS region transcription start site region 46624
Tssr46625 5 72914352 to 72914383 31 + TSS region transcription start site region 46625
Slain2 5 72914362 to 72978841 64479 + protein coding gene SLAIN motif family, member 2
Tssr46626 5 72914411 to 72914476 65 + TSS region transcription start site region 46626
Tssr46627 5 72914507 to 72914520 13 + TSS region transcription start site region 46627
Tssr46628 5 72914554 to 72914565 11 + TSS region transcription start site region 46628
Cpgi15951 5 72932855 to 72933219 364 CpG island CpG island 15951
Gm10135 5 72965808 to 72974702 8894 - protein coding gene predicted gene 10135
Gm24776 5 72971179 to 72971264 85 - snRNA gene predicted gene, 24776
Cpgi15952 5 73006753 to 73007677 924 CpG island CpG island 15952
Tssr46629 5 73006897 to 73006916 19 + TSS region transcription start site region 46629
Slc10a4 5 73006904 to 73012955 6051 + protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 4
Tssr46630 5 73006922 to 73006937 15 + TSS region transcription start site region 46630
Cpgi15953 5 73013432 to 73014306 874 CpG island CpG island 15953
Gm15847 5 73013528 to 73017236 3708 + pseudogene predicted gene 15847
Gm42668 5 73015199 to 73017685 2486 + unclassified gene predicted gene 42668
Fryl 5 73020191 to 73256628 236437 - protein coding gene FRY like transcription coactivator
Tssr1507 5 73021998 to 73021999 1 + TSS region transcription start site region 1507
Tssr51342 5 73024655 to 73024658 3 - TSS region transcription start site region 51342
Tssr51343 5 73024806 to 73024811 5 - TSS region transcription start site region 51343
Gm42572 5 73041777 to 73045154 3377 - unclassified gene predicted gene 42572
Cpgi15954 5 73071441 to 73071603 162 CpG island CpG island 15954
Tssr51344 5 73100118 to 73100121 3 - TSS region transcription start site region 51344
Obq27 5 73128312 to 73128312 0 QTL obesity QTL 27
Tssr51345 5 73131432 to 73131437 5 - TSS region transcription start site region 51345
Tssr51346 5 73132948 to 73132967 19 - TSS region transcription start site region 51346
Tssr51347 5 73156370 to 73156390 20 - TSS region transcription start site region 51347
1700071G01Rik 5 73157014 to 73157884 870 + antisense lncRNA gene RIKEN cDNA 1700071G01 gene
Tssr51348 5 73168409 to 73168420 11 - TSS region transcription start site region 51348
Tssr51349 5 73173460 to 73173463 3 - TSS region transcription start site region 51349
Tssr51350 5 73175164 to 73175170 6 - TSS region transcription start site region 51350
Tssr51351 5 73180198 to 73180201 3 - TSS region transcription start site region 51351
Tssr51352 5 73182645 to 73182650 5 - TSS region transcription start site region 51352
Gm42571 5 73187954 to 73190417 2463 - unclassified gene predicted gene 42571
Tssr51353 5 73191836 to 73191847 11 - TSS region transcription start site region 51353
Tssr51354 5 73191848 to 73191922 74 - TSS region transcription start site region 51354
Tssr51355 5 73191927 to 73191932 5 - TSS region transcription start site region 51355
Tssr51356 5 73191948 to 73191961 13 - TSS region transcription start site region 51356
D5Mit356.3 5 73195916 to 73196032 116 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 356.3
D5Mit356 5 73196008 to 73196131 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 356
Tssr51357 5 73209632 to 73209635 3 - TSS region transcription start site region 51357
Gm17207 5 73210156 to 73212643 2487 - sense intronic lncRNA gene predicted gene 17207
Tssr51358 5 73212567 to 73212605 38 - TSS region transcription start site region 51358
Tssr51359 5 73212606 to 73212622 16 - TSS region transcription start site region 51359
Tssr51360 5 73212638 to 73212646 8 - TSS region transcription start site region 51360
Tssr46631 5 73230469 to 73230470 1 + TSS region transcription start site region 46631
D5Buc49 5 73254209 to 73254416 207 DNA segment DNA segment, Chr 5, Bucan 49
Cpgi15955 5 73255323 to 73256820 1497 CpG island CpG island 15955
Tssr51361 5 73256522 to 73256534 12 - TSS region transcription start site region 51361
Tssr51362 5 73256555 to 73256636 81 - TSS region transcription start site region 51362
Tssr46632 5 73256773 to 73256792 19 + TSS region transcription start site region 46632
Tssr46633 5 73256956 to 73256968 12 + TSS region transcription start site region 46633
Gm34411 5 73263429 to 73268986 5557 + lincRNA gene predicted gene, 34411
1700025M24Rik 5 73268580 to 73284184 15604 - lincRNA gene RIKEN cDNA 1700025M24 gene
Gm42734 5 73272872 to 73273749 877 + unclassified gene predicted gene 42734
Tssr51363 5 73284150 to 73284184 34 - TSS region transcription start site region 51363
Gm40316 5 73284233 to 73287542 3309 + lncRNA gene predicted gene, 40316
Tssr46634 5 73284239 to 73284248 9 + TSS region transcription start site region 46634
Tssr46635 5 73284264 to 73284273 9 + TSS region transcription start site region 46635
D5Mit58 5 73290520 to 73290634 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 58
Cpgi15956 5 73292539 to 73293279 740 CpG island CpG island 15956
Ociad1 5 73292784 to 73314069 21285 + protein coding gene OCIA domain containing 1
Tssr46636 5 73292794 to 73292819 25 + TSS region transcription start site region 46636
Tssr46637 5 73292821 to 73292846 25 + TSS region transcription start site region 46637
Tssr1508 5 73292864 to 73292875 11 + TSS region transcription start site region 1508
Tssr46638 5 73293316 to 73293319 3 + TSS region transcription start site region 46638
Tssr46639 5 73304613 to 73304637 24 + TSS region transcription start site region 46639
Tssr46640 5 73306664 to 73306677 13 + TSS region transcription start site region 46640
Gm42733 5 73308059 to 73308577 518 - unclassified gene predicted gene 42733
Gm42732 5 73311364 to 73312560 1196 + unclassified gene predicted gene 42732
Ociad2 5 73322198 to 73338947 16749 - protein coding gene OCIA domain containing 2
Cpgi15957 5 73338139 to 73338888 749 CpG island CpG island 15957
Tssr51364 5 73338554 to 73338576 22 - TSS region transcription start site region 51364
Tssr51365 5 73338580 to 73338640 60 - TSS region transcription start site region 51365
Cpgi15958 5 73338896 to 73339048 152 CpG island CpG island 15958
Tssr51366 5 73338973 to 73339005 32 - TSS region transcription start site region 51366
Tssr51367 5 73339888 to 73339894 6 - TSS region transcription start site region 51367
Gm34496 5 73348694 to 73363766 15072 + lncRNA gene predicted gene, 34496
Tssr46641 5 73380530 to 73380546 16 + TSS region transcription start site region 46641
Gm34583 5 73380560 to 73391102 10542 + lncRNA gene predicted gene, 34583
Tssr46642 5 73380582 to 73380592 10 + TSS region transcription start site region 46642
Gm35960 5 73396799 to 73397813 1014 - pseudogene predicted gene, 35960
Cpgi15959 5 73405982 to 73406647 665 CpG island CpG island 15959
Cwh43 5 73406075 to 73453435 47360 + protein coding gene cell wall biogenesis 43 C-terminal homolog
Tssr46643 5 73406218 to 73406268 50 + TSS region transcription start site region 46643
Gm43798 5 73459329 to 73459722 393 - unclassified gene predicted gene 43798
Gm15653 5 73476447 to 73477353 906 - pseudogene predicted gene 15653
Tssr46644 5 73481020 to 73481035 15 + TSS region transcription start site region 46644
Dcun1d4 5 73481027 to 73560794 79767 + protein coding gene DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
Tssr46645 5 73481051 to 73481062 11 + TSS region transcription start site region 46645
Cpgi15960 5 73490393 to 73492634 2241 CpG island CpG island 15960
Tssr46646 5 73491045 to 73491110 65 + TSS region transcription start site region 46646
Tssr46647 5 73502625 to 73502638 13 + TSS region transcription start site region 46647
Tssr46648 5 73502645 to 73502654 9 + TSS region transcription start site region 46648
Tssr46649 5 73502659 to 73502675 16 + TSS region transcription start site region 46649
Tssr46650 5 73502678 to 73502689 11 + TSS region transcription start site region 46650
Tssr46651 5 73557279 to 73557290 11 + TSS region transcription start site region 46651
Tssr46652 5 73557304 to 73557326 22 + TSS region transcription start site region 46652
Tssr46653 5 73558059 to 73558064 5 + TSS region transcription start site region 46653
Tssr46654 5 73558324 to 73558356 32 + TSS region transcription start site region 46654
Lrrc66 5 73606642 to 73632421 25779 - protein coding gene leucine rich repeat containing 66
Tssr51368 5 73630303 to 73630343 40 - TSS region transcription start site region 51368
Tssr51369 5 73630351 to 73630365 14 - TSS region transcription start site region 51369
Tssr46655 5 73632334 to 73632336 2 + TSS region transcription start site region 46655
Tssr51370 5 73632421 to 73632434 13 - TSS region transcription start site region 51370
Sgcb 5 73632749 to 73647731 14982 - protein coding gene sarcoglycan, beta (dystrophin-associated glycoprotein)
Gm43799 5 73647013 to 73647591 578 - unclassified gene predicted gene 43799
Cpgi15961 5 73647254 to 73648030 776 CpG island CpG island 15961
Tssr51371 5 73647711 to 73647718 7 - TSS region transcription start site region 51371
Tssr51372 5 73647720 to 73647754 34 - TSS region transcription start site region 51372
Cpgi15962 5 73650779 to 73651904 1125 CpG island CpG island 15962
Gm34902 5 73650980 to 73652470 1490 - lncRNA gene predicted gene, 34902
Tssr46656 5 73651331 to 73651344 13 + TSS region transcription start site region 46656
Tssr46657 5 73651346 to 73651369 23 + TSS region transcription start site region 46657
Spata18 5 73651365 to 73679484 28119 + protein coding gene spermatogenesis associated 18
Tssr46658 5 73651376 to 73651394 18 + TSS region transcription start site region 46658
Tssr51373 5 73651799 to 73651836 37 - TSS region transcription start site region 51373
Tssr46659 5 73651844 to 73651892 48 + TSS region transcription start site region 46659
Cpgi15963 5 73669357 to 73669872 515 CpG island CpG island 15963
Cpgi15964 5 73721977 to 73722182 205 CpG island CpG island 15964
Gm34960 5 73797525 to 73804674 7149 - lncRNA gene predicted gene, 34960
Cpgi15965 5 73822272 to 73822603 331 CpG island CpG island 15965
1700019F05Rik 5 73912896 to 73920421 7525 + lincRNA gene RIKEN cDNA 1700019F05 gene
D5B6CS40 5 73914563 to 73914732 169 DNA segment DNA segment, Chr 5, B6CS 40