Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:72527586-73277617

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nfxl1 5 72513301 to 72559684 46383 - protein coding gene nuclear transcription factor, X-box binding-like 1
Gm43815 5 72554240 to 72555229 989 - unclassified gene predicted gene 43815
Tssr51312 5 72556283 to 72556316 33 - TSS region transcription start site region 51312
Cpgi15945 5 72558938 to 72560000 1062 CpG island CpG island 15945
Tssr51313 5 72559614 to 72559691 77 - TSS region transcription start site region 51313
D5Mit152 5 72560395 to 72560492 97 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 152
Gm34144 5 72572174 to 72572432 258 + pseudogene predicted gene, 34144
Zar1 5 72577113 to 72581362 4249 - protein coding gene zygote arrest 1
Cpgi15946 5 72580243 to 72581289 1046 CpG island CpG island 15946
Gm5868 5 72581639 to 72587550 5911 - protein coding gene predicted gene 5868
Cpgi15947 5 72586830 to 72587603 773 CpG island CpG island 15947
Tssr51314 5 72587544 to 72587555 11 - TSS region transcription start site region 51314
Tssr46614 5 72602805 to 72602810 5 + TSS region transcription start site region 46614
Cnga1 5 72603696 to 72642752 39056 - protein coding gene cyclic nucleotide gated channel alpha 1
Tssr51315 5 72616775 to 72616784 9 - TSS region transcription start site region 51315
Tssr51316 5 72617382 to 72617391 9 - TSS region transcription start site region 51316
Gm5297 5 72626858 to 72628028 1170 - pseudogene predicted gene 5297
Tssr51317 5 72627937 to 72627942 5 - TSS region transcription start site region 51317
Tssr46615 5 72635004 to 72635038 34 + TSS region transcription start site region 46615
Tssr51318 5 72636206 to 72636218 12 - TSS region transcription start site region 51318
Tssr51319 5 72636227 to 72636236 9 - TSS region transcription start site region 51319
Tssr51320 5 72642725 to 72642749 24 - TSS region transcription start site region 51320
Tssr51321 5 72642758 to 72642766 8 - TSS region transcription start site region 51321
Tssr46616 5 72644409 to 72644418 9 + TSS region transcription start site region 46616
4933408A14Rik 5 72644410 to 72646552 2142 + lincRNA gene RIKEN cDNA 4933408A14 gene
Cpgi15948 5 72647330 to 72648388 1058 CpG island CpG island 15948
Tssr51322 5 72647667 to 72647683 16 - TSS region transcription start site region 51322
Tssr46617 5 72647779 to 72647801 22 + TSS region transcription start site region 46617
Nipal1 5 72647796 to 72671078 23282 + protein coding gene NIPA-like domain containing 1
Tssr46618 5 72647810 to 72647853 43 + TSS region transcription start site region 46618
D5Buc48 5 72651840 to 72652095 255 DNA segment DNA segment, Chr 5, Bucan 48
Tssr51323 5 72675285 to 72675286 1 - TSS region transcription start site region 51323
Txk 5 72695978 to 72752777 56799 - protein coding gene TXK tyrosine kinase
Gm43717 5 72726062 to 72726371 309 + pseudogene predicted gene 43717
Tssr51324 5 72736540 to 72736575 35 - TSS region transcription start site region 51324
Tssr51325 5 72736598 to 72736610 12 - TSS region transcription start site region 51325
D5Nds2 5 72750852 to 72751015 163 DNA segment DNA segment, Chr 5, Nuffield Department of Surgery 2
Tssr51326 5 72752732 to 72752762 30 - TSS region transcription start site region 51326
Tssr51327 5 72752763 to 72752784 21 - TSS region transcription start site region 51327
Tssr51328 5 72752788 to 72752797 9 - TSS region transcription start site region 51328
Tec 5 72755716 to 72868483 112767 - protein coding gene tec protein tyrosine kinase
Tssr51329 5 72763712 to 72763734 22 - TSS region transcription start site region 51329
Tssr51330 5 72763743 to 72763779 36 - TSS region transcription start site region 51330
Tssr51331 5 72763790 to 72763803 13 - TSS region transcription start site region 51331
Tssr51332 5 72774943 to 72774954 11 - TSS region transcription start site region 51332
Desp3 5 72775341 to 77098356 4323015 QTL despair 3
D5Mit134 5 72775341 to 72775450 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 134
Tssr46619 5 72803097 to 72803100 3 + TSS region transcription start site region 46619
Gm43499 5 72809968 to 72812074 2106 - unclassified gene predicted gene 43499
Tssr51333 5 72813023 to 72813070 47 - TSS region transcription start site region 51333
Tssr51334 5 72813954 to 72813966 12 - TSS region transcription start site region 51334
Tssr51335 5 72840497 to 72840502 5 - TSS region transcription start site region 51335
Tssr51336 5 72846430 to 72846469 39 - TSS region transcription start site region 51336
Tssr51337 5 72852775 to 72852782 7 - TSS region transcription start site region 51337
Cpgi15949 5 72868023 to 72868820 797 CpG island CpG island 15949
Tssr51338 5 72868431 to 72868451 20 - TSS region transcription start site region 51338
Tssr51339 5 72868471 to 72868474 3 - TSS region transcription start site region 51339
Tssr46620 5 72875879 to 72875884 5 + TSS region transcription start site region 46620
Tssr46621 5 72902586 to 72902617 31 + TSS region transcription start site region 46621
Tssr46622 5 72905049 to 72905055 6 + TSS region transcription start site region 46622
Gm9870 5 72912587 to 72914942 2355 - pseudogene predicted gene 9870
Cpgi15950 5 72913781 to 72915594 1813 CpG island CpG island 15950
Tssr51340 5 72914098 to 72914113 15 - TSS region transcription start site region 51340
Tssr51341 5 72914128 to 72914142 14 - TSS region transcription start site region 51341
Tssr46623 5 72914264 to 72914303 39 + TSS region transcription start site region 46623
Tssr46624 5 72914307 to 72914349 42 + TSS region transcription start site region 46624
Tssr46625 5 72914352 to 72914383 31 + TSS region transcription start site region 46625
Slain2 5 72914362 to 72978841 64479 + protein coding gene SLAIN motif family, member 2
Tssr46626 5 72914411 to 72914476 65 + TSS region transcription start site region 46626
Tssr46627 5 72914507 to 72914520 13 + TSS region transcription start site region 46627
Tssr46628 5 72914554 to 72914565 11 + TSS region transcription start site region 46628
Cpgi15951 5 72932855 to 72933219 364 CpG island CpG island 15951
Gm10135 5 72965808 to 72974702 8894 - protein coding gene predicted gene 10135
Gm24776 5 72971179 to 72971264 85 - snRNA gene predicted gene, 24776
Cpgi15952 5 73006753 to 73007677 924 CpG island CpG island 15952
Tssr46629 5 73006897 to 73006916 19 + TSS region transcription start site region 46629
Slc10a4 5 73006904 to 73012955 6051 + protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 4
Tssr46630 5 73006922 to 73006937 15 + TSS region transcription start site region 46630
Cpgi15953 5 73013432 to 73014306 874 CpG island CpG island 15953
Gm15847 5 73013528 to 73017236 3708 + pseudogene predicted gene 15847
Gm42668 5 73015199 to 73017685 2486 + unclassified gene predicted gene 42668
Fryl 5 73020191 to 73256628 236437 - protein coding gene FRY like transcription coactivator
Tssr1507 5 73021998 to 73021999 1 + TSS region transcription start site region 1507
Tssr51342 5 73024655 to 73024658 3 - TSS region transcription start site region 51342
Tssr51343 5 73024806 to 73024811 5 - TSS region transcription start site region 51343
Gm42572 5 73041777 to 73045154 3377 - unclassified gene predicted gene 42572
Cpgi15954 5 73071441 to 73071603 162 CpG island CpG island 15954
Tssr51344 5 73100118 to 73100121 3 - TSS region transcription start site region 51344
Obq27 5 73128312 to 73128312 0 QTL obesity QTL 27
Tssr51345 5 73131432 to 73131437 5 - TSS region transcription start site region 51345
Tssr51346 5 73132948 to 73132967 19 - TSS region transcription start site region 51346
Tssr51347 5 73156370 to 73156390 20 - TSS region transcription start site region 51347
1700071G01Rik 5 73157014 to 73157884 870 + antisense lncRNA gene RIKEN cDNA 1700071G01 gene
Tssr51348 5 73168409 to 73168420 11 - TSS region transcription start site region 51348
Tssr51349 5 73173460 to 73173463 3 - TSS region transcription start site region 51349
Tssr51350 5 73175164 to 73175170 6 - TSS region transcription start site region 51350
Tssr51351 5 73180198 to 73180201 3 - TSS region transcription start site region 51351
Tssr51352 5 73182645 to 73182650 5 - TSS region transcription start site region 51352
Gm42571 5 73187954 to 73190417 2463 - unclassified gene predicted gene 42571
Tssr51353 5 73191836 to 73191847 11 - TSS region transcription start site region 51353
Tssr51354 5 73191848 to 73191922 74 - TSS region transcription start site region 51354
Tssr51355 5 73191927 to 73191932 5 - TSS region transcription start site region 51355
Tssr51356 5 73191948 to 73191961 13 - TSS region transcription start site region 51356
D5Mit356.3 5 73195916 to 73196032 116 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 356.3
D5Mit356 5 73196008 to 73196131 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 356
Tssr51357 5 73209632 to 73209635 3 - TSS region transcription start site region 51357
Gm17207 5 73210156 to 73212643 2487 - sense intronic lncRNA gene predicted gene 17207
Tssr51358 5 73212567 to 73212605 38 - TSS region transcription start site region 51358
Tssr51359 5 73212606 to 73212622 16 - TSS region transcription start site region 51359
Tssr51360 5 73212638 to 73212646 8 - TSS region transcription start site region 51360
Tssr46631 5 73230469 to 73230470 1 + TSS region transcription start site region 46631
D5Buc49 5 73254209 to 73254416 207 DNA segment DNA segment, Chr 5, Bucan 49
Cpgi15955 5 73255323 to 73256820 1497 CpG island CpG island 15955
Tssr51361 5 73256522 to 73256534 12 - TSS region transcription start site region 51361
Tssr51362 5 73256555 to 73256636 81 - TSS region transcription start site region 51362
Tssr46632 5 73256773 to 73256792 19 + TSS region transcription start site region 46632
Tssr46633 5 73256956 to 73256968 12 + TSS region transcription start site region 46633
Gm34411 5 73263429 to 73268986 5557 + lincRNA gene predicted gene, 34411
1700025M24Rik 5 73268580 to 73284184 15604 - lincRNA gene RIKEN cDNA 1700025M24 gene
Gm42734 5 73272872 to 73273749 877 + unclassified gene predicted gene 42734