Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:71719610-72809624

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gabrb1 5 71658113 to 72149037 490924 + protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit beta 1
Tssr46607 5 71729192 to 71729195 3 + TSS region transcription start site region 46607
C230036F13Rik 5 71748247 to 71751717 3470 unclassified gene RIKEN cDNA C230036F13 gene
D5Buc46 5 71804342 to 71804599 257 DNA segment DNA segment, Chr 5, Bucan 46
D5Mit355 5 71895202 to 71895305 103 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 355
D5Buc38 5 71937438 to 71937738 300 DNA segment DNA segment, Chr 5, Bucan 38
D5Buc37 5 71937624 to 71937798 174 DNA segment DNA segment, Chr 5, Bucan 37
D5Buc35 5 71962875 to 71963070 195 DNA segment DNA segment, Chr 5, Bucan 35
Gm15617 5 72032718 to 72033488 770 - pseudogene predicted gene 15617
Tssr46608 5 72047127 to 72047139 12 + TSS region transcription start site region 46608
Gm15616 5 72047205 to 72047579 374 + pseudogene predicted gene 15616
D5Buc28 5 72082374 to 72082629 255 DNA segment DNA segment, Chr 5, Bucan 28
D5Buc34 5 72097304 to 72097551 247 DNA segment DNA segment, Chr 5, Bucan 34
D5Buc32 5 72126624 to 72126809 185 DNA segment DNA segment, Chr 5, Bucan 32
Cpgi15941 5 72136459 to 72136830 371 CpG island CpG island 15941
D5Buc29 5 72141444 to 72141718 274 DNA segment DNA segment, Chr 5, Bucan 29
D5Buc30e 5 72141807 to 72141970 163 DNA segment DNA segment, Chr 5, Bucan 30 expressed
C030009O12Rik 5 72146379 to 72149034 2655 unclassified gene RIKEN cDNA C030009O12 gene
D5Buc27 5 72150386 to 72151000 614 DNA segment DNA segment, Chr 5, Bucan 27
Commd8 5 72156576 to 72168183 11607 - protein coding gene COMM domain containing 8
Tssr51288 5 72159786 to 72159801 15 - TSS region transcription start site region 51288
Tssr51289 5 72163061 to 72163076 15 - TSS region transcription start site region 51289
Tssr51290 5 72165134 to 72165138 4 - TSS region transcription start site region 51290
Cpgi15942 5 72167712 to 72168289 577 CpG island CpG island 15942
Tssr51291 5 72168118 to 72168138 20 - TSS region transcription start site region 51291
Tssr51292 5 72168142 to 72168199 57 - TSS region transcription start site region 51292
Gm42569 5 72171817 to 72172288 471 - pseudogene predicted gene 42569
Cpgi15943 5 72203167 to 72203646 479 CpG island CpG island 15943
Tssr46609 5 72203296 to 72203364 68 + TSS region transcription start site region 46609
Atp10d 5 72203329 to 72298771 95442 + polymorphic pseudogene ATPase, class V, type 10D
Tssr46610 5 72203378 to 72203388 10 + TSS region transcription start site region 46610
D5Buc25 5 72214241 to 72214377 136 DNA segment DNA segment, Chr 5, Bucan 25
Tssr46611 5 72259494 to 72259513 19 + TSS region transcription start site region 46611
Tssr46612 5 72261421 to 72261428 7 + TSS region transcription start site region 46612
Tssr46613 5 72261432 to 72261437 5 + TSS region transcription start site region 46613
Tssr51293 5 72262066 to 72262079 13 - TSS region transcription start site region 51293
Tssr51294 5 72264597 to 72264606 9 - TSS region transcription start site region 51294
Tssr51295 5 72264610 to 72264624 14 - TSS region transcription start site region 51295
D5Buc23 5 72298057 to 72298368 311 DNA segment DNA segment, Chr 5, Bucan 23
Corin 5 72300025 to 72504473 204448 - protein coding gene corin, serine peptidase
Gm25768 5 72305365 to 72305462 97 - snRNA gene predicted gene, 25768
Gm20647 5 72316354 to 72368048 51694 + antisense lncRNA gene predicted gene 20647
D5Buc22 5 72331403 to 72331574 171 DNA segment DNA segment, Chr 5, Bucan 22
Tssr51296 5 72378730 to 72378732 2 - TSS region transcription start site region 51296
D5Mit305 5 72409248 to 72409344 96 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 305
Gm19560 5 72409444 to 72409957 513 + pseudogene predicted gene, 19560
Tssr51297 5 72417717 to 72417728 11 - TSS region transcription start site region 51297
Gm23712 5 72418713 to 72418819 106 - snRNA gene predicted gene, 23712
D5Buc20 5 72425281 to 72425562 281 DNA segment DNA segment, Chr 5, Bucan 20
Ahl13 5 72488531 to 72488652 121 QTL age related hearing loss, early onset 13
D5Mit336 5 72488531 to 72488652 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 336
AU023070 5 72496200 to 72497104 904 - lincRNA gene expressed sequence AU023070
Tssr51298 5 72501873 to 72501909 36 - TSS region transcription start site region 51298
Tssr51299 5 72503382 to 72503393 11 - TSS region transcription start site region 51299
Tssr51300 5 72503407 to 72503417 10 - TSS region transcription start site region 51300
Cpgi15944 5 72503416 to 72504499 1083 CpG island CpG island 15944
Tssr51301 5 72504061 to 72504066 5 - TSS region transcription start site region 51301
Tssr51302 5 72504177 to 72504188 11 - TSS region transcription start site region 51302
Tssr51303 5 72504189 to 72504200 11 - TSS region transcription start site region 51303
Tssr51304 5 72504202 to 72504247 45 - TSS region transcription start site region 51304
Tssr51305 5 72504249 to 72504276 27 - TSS region transcription start site region 51305
Tssr51306 5 72504277 to 72504289 12 - TSS region transcription start site region 51306
Tssr51307 5 72504303 to 72504310 7 - TSS region transcription start site region 51307
Tssr51308 5 72504335 to 72504346 11 - TSS region transcription start site region 51308
Tssr51309 5 72504500 to 72504520 20 - TSS region transcription start site region 51309
Tssr51310 5 72504529 to 72504551 22 - TSS region transcription start site region 51310
Tssr51311 5 72504568 to 72504581 13 - TSS region transcription start site region 51311
Nfxl1 5 72513301 to 72559684 46383 - protein coding gene nuclear transcription factor, X-box binding-like 1
Gm43815 5 72554240 to 72555229 989 - unclassified gene predicted gene 43815
Tssr51312 5 72556283 to 72556316 33 - TSS region transcription start site region 51312
Cpgi15945 5 72558938 to 72560000 1062 CpG island CpG island 15945
Tssr51313 5 72559614 to 72559691 77 - TSS region transcription start site region 51313
D5Mit152 5 72560395 to 72560492 97 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 152
Gm34144 5 72572174 to 72572432 258 + pseudogene predicted gene, 34144
Zar1 5 72577113 to 72581362 4249 - protein coding gene zygote arrest 1
Cpgi15946 5 72580243 to 72581289 1046 CpG island CpG island 15946
Gm5868 5 72581639 to 72587550 5911 - protein coding gene predicted gene 5868
Cpgi15947 5 72586830 to 72587603 773 CpG island CpG island 15947
Tssr51314 5 72587544 to 72587555 11 - TSS region transcription start site region 51314
Tssr46614 5 72602805 to 72602810 5 + TSS region transcription start site region 46614
Cnga1 5 72603696 to 72642752 39056 - protein coding gene cyclic nucleotide gated channel alpha 1
Tssr51315 5 72616775 to 72616784 9 - TSS region transcription start site region 51315
Tssr51316 5 72617382 to 72617391 9 - TSS region transcription start site region 51316
Gm5297 5 72626858 to 72628028 1170 - pseudogene predicted gene 5297
Tssr51317 5 72627937 to 72627942 5 - TSS region transcription start site region 51317
Tssr46615 5 72635004 to 72635038 34 + TSS region transcription start site region 46615
Tssr51318 5 72636206 to 72636218 12 - TSS region transcription start site region 51318
Tssr51319 5 72636227 to 72636236 9 - TSS region transcription start site region 51319
Tssr51320 5 72642725 to 72642749 24 - TSS region transcription start site region 51320
Tssr51321 5 72642758 to 72642766 8 - TSS region transcription start site region 51321
Tssr46616 5 72644409 to 72644418 9 + TSS region transcription start site region 46616
4933408A14Rik 5 72644410 to 72646552 2142 + lincRNA gene RIKEN cDNA 4933408A14 gene
Cpgi15948 5 72647330 to 72648388 1058 CpG island CpG island 15948
Tssr51322 5 72647667 to 72647683 16 - TSS region transcription start site region 51322
Tssr46617 5 72647779 to 72647801 22 + TSS region transcription start site region 46617
Nipal1 5 72647796 to 72671078 23282 + protein coding gene NIPA-like domain containing 1
Tssr46618 5 72647810 to 72647853 43 + TSS region transcription start site region 46618
D5Buc48 5 72651840 to 72652095 255 DNA segment DNA segment, Chr 5, Bucan 48
Tssr51323 5 72675285 to 72675286 1 - TSS region transcription start site region 51323
Txk 5 72695978 to 72752777 56799 - protein coding gene TXK tyrosine kinase
Gm43717 5 72726062 to 72726371 309 + pseudogene predicted gene 43717
Tssr51324 5 72736540 to 72736575 35 - TSS region transcription start site region 51324
Tssr51325 5 72736598 to 72736610 12 - TSS region transcription start site region 51325
D5Nds2 5 72750852 to 72751015 163 DNA segment DNA segment, Chr 5, Nuffield Department of Surgery 2
Tssr51326 5 72752732 to 72752762 30 - TSS region transcription start site region 51326
Tssr51327 5 72752763 to 72752784 21 - TSS region transcription start site region 51327
Tssr51328 5 72752788 to 72752797 9 - TSS region transcription start site region 51328
Tec 5 72755716 to 72868483 112767 - protein coding gene tec protein tyrosine kinase
Tssr51329 5 72763712 to 72763734 22 - TSS region transcription start site region 51329
Tssr51330 5 72763743 to 72763779 36 - TSS region transcription start site region 51330
Tssr51331 5 72763790 to 72763803 13 - TSS region transcription start site region 51331
Tssr51332 5 72774943 to 72774954 11 - TSS region transcription start site region 51332
D5Mit134 5 72775341 to 72775450 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 134
Desp3 5 72775341 to 77098356 4323015 QTL despair 3
Tssr46619 5 72803097 to 72803100 3 + TSS region transcription start site region 46619