Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:67332664-68067536

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc30a9 5 67306937 to 67356834 49897 + protein coding gene solute carrier family 30 (zinc transporter), member 9
Tssr46578 5 67360367 to 67360377 10 + TSS region transcription start site region 46578
Gm43698 5 67360387 to 67366599 6212 + lincRNA gene predicted gene 43698
9430027B09Rik 5 67381178 to 67382135 957 unclassified gene RIKEN cDNA 9430027B09 gene
Bend4 5 67392147 to 67428310 36163 - protein coding gene BEN domain containing 4
D5Ncnp4 5 67393832 to 67393978 146 DNA segment DNA segment, Chr 5, National Center of Neurology and Psychiatry 4
Tssr51234 5 67394355 to 67394359 4 - TSS region transcription start site region 51234
Tssr46579 5 67395706 to 67395711 5 + TSS region transcription start site region 46579
Tssr46580 5 67404602 to 67404614 12 + TSS region transcription start site region 46580
Gm33345 5 67405468 to 67417978 12510 + lncRNA gene predicted gene, 33345
Tssr51235 5 67425160 to 67425164 4 - TSS region transcription start site region 51235
Tssr51236 5 67425632 to 67425654 22 - TSS region transcription start site region 51236
Cpgi15932 5 67426219 to 67428348 2129 CpG island CpG island 15932
Tssr46581 5 67426785 to 67426801 16 + TSS region transcription start site region 46581
Tssr51237 5 67427586 to 67427593 7 - TSS region transcription start site region 51237
Tssr51238 5 67427674 to 67427691 17 - TSS region transcription start site region 51238
Gm26756 5 67427680 to 67437990 10310 + antisense lncRNA gene predicted gene, 26756
Tssr51239 5 67427699 to 67427776 77 - TSS region transcription start site region 51239
Tssr51240 5 67427794 to 67427813 19 - TSS region transcription start site region 51240
Gm42632 5 67427993 to 67430403 2410 + unclassified gene predicted gene 42632
Tssr51241 5 67428038 to 67428053 15 - TSS region transcription start site region 51241
Tssr51242 5 67428059 to 67428095 36 - TSS region transcription start site region 51242
Tssr51243 5 67428100 to 67428138 38 - TSS region transcription start site region 51243
Tssr46582 5 67450469 to 67450506 37 + TSS region transcription start site region 46582
Gm40315 5 67450493 to 67457308 6815 + lncRNA gene predicted gene, 40315
Tssr46583 5 67450513 to 67450550 37 + TSS region transcription start site region 46583
Tssr46584 5 67450624 to 67450633 9 + TSS region transcription start site region 46584
Tssr46585 5 67453466 to 67453469 3 + TSS region transcription start site region 46585
Gm20072 5 67453479 to 67453770 291 + pseudogene predicted gene, 20072
Tssr46586 5 67463886 to 67463937 51 + TSS region transcription start site region 46586
C330024D21Rik 5 67463897 to 67477632 13735 + lncRNA gene RIKEN cDNA C330024D21 gene
Tssr1502 5 67473923 to 67473926 3 + TSS region transcription start site region 1502
Cpgi15933 5 67607191 to 67608998 1807 CpG island CpG island 15933
1700025A08Rik 5 67607218 to 67607826 608 - unclassified gene RIKEN cDNA 1700025A08 gene
Tssr46587 5 67607873 to 67607889 16 + TSS region transcription start site region 46587
Shisa3 5 67607883 to 67613987 6104 + protein coding gene shisa family member 3
Tssr46588 5 67607997 to 67608008 11 + TSS region transcription start site region 46588
Tssr51244 5 67608239 to 67608262 23 - TSS region transcription start site region 51244
Tssr46589 5 67608364 to 67608395 31 + TSS region transcription start site region 46589
Tssr46590 5 67608530 to 67608540 10 + TSS region transcription start site region 46590
Tssr46591 5 67608580 to 67608614 34 + TSS region transcription start site region 46591
Tssr46592 5 67611333 to 67611341 8 + TSS region transcription start site region 46592
Tssr46593 5 67613203 to 67613223 20 + TSS region transcription start site region 46593
Atp8a1 5 67618140 to 67847434 229294 - protein coding gene ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
Tssr51245 5 67619421 to 67619425 4 - TSS region transcription start site region 51245
Gm23617 5 67631825 to 67631919 94 - miRNA gene predicted gene, 23617
Gm42735 5 67633663 to 67635308 1645 - unclassified gene predicted gene 42735
Tssr46594 5 67639883 to 67639893 10 + TSS region transcription start site region 46594
Tssr46595 5 67642168 to 67642202 34 + TSS region transcription start site region 46595
Gm15478 5 67642401 to 67646776 4375 + antisense lncRNA gene predicted gene 15478
Gm46914 5 67697664 to 67702536 4872 - lncRNA gene predicted gene, 46914
Tssr51246 5 67697751 to 67697799 48 - TSS region transcription start site region 51246
Tssr51247 5 67744705 to 67744709 4 - TSS region transcription start site region 51247
Tssr51248 5 67754986 to 67754990 4 - TSS region transcription start site region 51248
Gm42737 5 67757576 to 67759330 1754 - unclassified gene predicted gene 42737
Tssr51249 5 67766714 to 67766718 4 - TSS region transcription start site region 51249
Tssr51250 5 67776124 to 67776129 5 - TSS region transcription start site region 51250
Tssr51251 5 67777337 to 67777374 37 - TSS region transcription start site region 51251
Tssr51252 5 67783729 to 67783754 25 - TSS region transcription start site region 51252
Tssr51253 5 67784212 to 67784223 11 - TSS region transcription start site region 51253
Tssr51254 5 67815801 to 67815840 39 - TSS region transcription start site region 51254
Tssr1503 5 67815844 to 67815845 1 - TSS region transcription start site region 1503
Tssr51255 5 67815852 to 67815859 7 - TSS region transcription start site region 51255
Tssr51256 5 67815866 to 67815877 11 - TSS region transcription start site region 51256
D630030B08Rik 5 67833350 to 67836828 3478 - unclassified gene RIKEN cDNA D630030B08 gene
Gm42466 5 67843120 to 67844420 1300 - unclassified gene predicted gene 42466
Cpgi15934 5 67846639 to 67848045 1406 CpG island CpG island 15934
Tssr1504 5 67847305 to 67847310 5 - TSS region transcription start site region 1504
Tssr51257 5 67847360 to 67847375 15 - TSS region transcription start site region 51257
Tssr51258 5 67847383 to 67847398 15 - TSS region transcription start site region 51258
Tssr51259 5 67847400 to 67847439 39 - TSS region transcription start site region 51259
Tssr51260 5 67847445 to 67847458 13 - TSS region transcription start site region 51260
D5Mit111 5 67857737 to 67857885 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 111
Gm42736 5 67872882 to 67874234 1352 + unclassified gene predicted gene 42736
Gm15477 5 67879720 to 67908826 29106 + antisense lncRNA gene predicted gene 15477
Gm21905 5 67927261 to 67946421 19160 - protein coding gene predicted gene, 21905
4930425K10Rik 5 67933612 to 67943081 9469 - antisense lncRNA gene RIKEN cDNA 4930425K10 gene
Gm5108 5 67941669 to 67977070 35401 + protein coding gene predicted gene 5108
Gm43027 5 67980671 to 67984361 3690 + unclassified gene predicted gene 43027
Gm43028 5 67988527 to 67989007 480 - pseudogene predicted gene 43028
Tssr46596 5 68031775 to 68031798 23 + TSS region transcription start site region 46596
Grxcr1 5 68031835 to 68166398 134563 + protein coding gene glutaredoxin, cysteine rich 1