Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:67328897-67612632

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc30a9 5 67306937 to 67356834 49897 + protein coding gene solute carrier family 30 (zinc transporter), member 9
Tssr46578 5 67360367 to 67360377 10 + TSS region transcription start site region 46578
Gm43698 5 67360387 to 67366599 6212 + lincRNA gene predicted gene 43698
9430027B09Rik 5 67381178 to 67382135 957 unclassified gene RIKEN cDNA 9430027B09 gene
Bend4 5 67392147 to 67428310 36163 - protein coding gene BEN domain containing 4
D5Ncnp4 5 67393832 to 67393978 146 DNA segment DNA segment, Chr 5, National Center of Neurology and Psychiatry 4
Tssr51234 5 67394355 to 67394359 4 - TSS region transcription start site region 51234
Tssr46579 5 67395706 to 67395711 5 + TSS region transcription start site region 46579
Tssr46580 5 67404602 to 67404614 12 + TSS region transcription start site region 46580
Gm33345 5 67405468 to 67417978 12510 + lncRNA gene predicted gene, 33345
Tssr51235 5 67425160 to 67425164 4 - TSS region transcription start site region 51235
Tssr51236 5 67425632 to 67425654 22 - TSS region transcription start site region 51236
Cpgi15932 5 67426219 to 67428348 2129 CpG island CpG island 15932
Tssr46581 5 67426785 to 67426801 16 + TSS region transcription start site region 46581
Tssr51237 5 67427586 to 67427593 7 - TSS region transcription start site region 51237
Tssr51238 5 67427674 to 67427691 17 - TSS region transcription start site region 51238
Gm26756 5 67427680 to 67437990 10310 + antisense lncRNA gene predicted gene, 26756
Tssr51239 5 67427699 to 67427776 77 - TSS region transcription start site region 51239
Tssr51240 5 67427794 to 67427813 19 - TSS region transcription start site region 51240
Gm42632 5 67427993 to 67430403 2410 + unclassified gene predicted gene 42632
Tssr51241 5 67428038 to 67428053 15 - TSS region transcription start site region 51241
Tssr51242 5 67428059 to 67428095 36 - TSS region transcription start site region 51242
Tssr51243 5 67428100 to 67428138 38 - TSS region transcription start site region 51243
Tssr46582 5 67450469 to 67450506 37 + TSS region transcription start site region 46582
Gm40315 5 67450493 to 67457308 6815 + lncRNA gene predicted gene, 40315
Tssr46583 5 67450513 to 67450550 37 + TSS region transcription start site region 46583
Tssr46584 5 67450624 to 67450633 9 + TSS region transcription start site region 46584
Tssr46585 5 67453466 to 67453469 3 + TSS region transcription start site region 46585
Gm20072 5 67453479 to 67453770 291 + pseudogene predicted gene, 20072
Tssr46586 5 67463886 to 67463937 51 + TSS region transcription start site region 46586
C330024D21Rik 5 67463897 to 67477632 13735 + lncRNA gene RIKEN cDNA C330024D21 gene
Tssr1502 5 67473923 to 67473926 3 + TSS region transcription start site region 1502
Cpgi15933 5 67607191 to 67608998 1807 CpG island CpG island 15933
1700025A08Rik 5 67607218 to 67607826 608 - unclassified gene RIKEN cDNA 1700025A08 gene
Tssr46587 5 67607873 to 67607889 16 + TSS region transcription start site region 46587
Shisa3 5 67607883 to 67613987 6104 + protein coding gene shisa family member 3
Tssr46588 5 67607997 to 67608008 11 + TSS region transcription start site region 46588
Tssr51244 5 67608239 to 67608262 23 - TSS region transcription start site region 51244
Tssr46589 5 67608364 to 67608395 31 + TSS region transcription start site region 46589
Tssr46590 5 67608530 to 67608540 10 + TSS region transcription start site region 46590
Tssr46591 5 67608580 to 67608614 34 + TSS region transcription start site region 46591
Tssr46592 5 67611333 to 67611341 8 + TSS region transcription start site region 46592