Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:66839109-67099132

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Limch1 5 66745840 to 67057159 311319 + protein coding gene LIM and calponin homology domains 1
Tssr46545 5 66853404 to 66853432 28 + TSS region transcription start site region 46545
Tssr46546 5 66857457 to 66857475 18 + TSS region transcription start site region 46546
Tssr46547 5 66857732 to 66857756 24 + TSS region transcription start site region 46547
Tssr46548 5 66890264 to 66890282 18 + TSS region transcription start site region 46548
Tssr46549 5 66890325 to 66890329 4 + TSS region transcription start site region 46549
Gm6517 5 66890366 to 66890876 510 + pseudogene predicted gene 6517
Tssr46550 5 66898410 to 66898463 53 + TSS region transcription start site region 46550
Tssr46551 5 66898477 to 66898494 17 + TSS region transcription start site region 46551
Gm21047 5 66902860 to 66904105 1245 - pseudogene predicted gene, 21047
Gm43281 5 66916008 to 66918711 2703 + unclassified gene predicted gene 43281
Tssr46552 5 66958599 to 66958604 5 + TSS region transcription start site region 46552
Tssr1500 5 66962679 to 66962705 26 + TSS region transcription start site region 1500
Tssr46553 5 66968421 to 66968447 26 + TSS region transcription start site region 46553
Tssr46554 5 66968532 to 66968546 14 + TSS region transcription start site region 46554
Tssr46555 5 66968559 to 66968575 16 + TSS region transcription start site region 46555
Tssr46556 5 66969109 to 66969132 23 + TSS region transcription start site region 46556
Gm43282 5 66969429 to 66971585 2156 + unclassified gene predicted gene 43282
Tssr46557 5 66977012 to 66977037 25 + TSS region transcription start site region 46557
Gm15949 5 66985091 to 66985641 550 - antisense lncRNA gene predicted gene 15949
Gm15948 5 66988816 to 66991207 2391 - antisense lncRNA gene predicted gene 15948
Cpgi15917 5 66997005 to 66997278 273 CpG island CpG island 15917
Tssr46558 5 66997031 to 66997068 37 + TSS region transcription start site region 46558
Tssr46559 5 66997086 to 66997135 49 + TSS region transcription start site region 46559
Tssr46560 5 66998617 to 66998640 23 + TSS region transcription start site region 46560
Gm33040 5 66999476 to 67001871 2395 + lncRNA gene predicted gene, 33040
Tssr46561 5 67028799 to 67028821 22 + TSS region transcription start site region 46561
Gm42713 5 67038432 to 67039376 944 - unclassified gene predicted gene 42713
Gm23841 5 67053679 to 67053792 113 - miRNA gene predicted gene, 23841
Tssr46562 5 67054462 to 67054469 7 + TSS region transcription start site region 46562
Tssr46563 5 67054765 to 67054775 10 + TSS region transcription start site region 46563
Phox2b 5 67094397 to 67099126 4729 - protein coding gene paired-like homeobox 2b
Tssr51221 5 67094871 to 67094879 8 - TSS region transcription start site region 51221
Cpgi15918 5 67095746 to 67096820 1074 CpG island CpG island 15918
Tssr51222 5 67095994 to 67095996 2 - TSS region transcription start site region 51222
Cpgi15919 5 67097511 to 67097981 470 CpG island CpG island 15919
Cpgi15920 5 67098583 to 67098888 305 CpG island CpG island 15920
Tssr46564 5 67098671 to 67098686 15 + TSS region transcription start site region 46564
Tssr51223 5 67099045 to 67099063 18 - TSS region transcription start site region 51223
Tssr51224 5 67099094 to 67099103 9 - TSS region transcription start site region 51224
Tssr51225 5 67099107 to 67099118 11 - TSS region transcription start site region 51225