Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:66805697-67715711

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Limch1 5 66745840 to 67057159 311319 + protein coding gene LIM and calponin homology domains 1
D5Mit110 5 66808327 to 66808467 140 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 110
Tssr46545 5 66853404 to 66853432 28 + TSS region transcription start site region 46545
Tssr46546 5 66857457 to 66857475 18 + TSS region transcription start site region 46546
Tssr46547 5 66857732 to 66857756 24 + TSS region transcription start site region 46547
Tssr46548 5 66890264 to 66890282 18 + TSS region transcription start site region 46548
Tssr46549 5 66890325 to 66890329 4 + TSS region transcription start site region 46549
Gm6517 5 66890366 to 66890876 510 + pseudogene predicted gene 6517
Tssr46550 5 66898410 to 66898463 53 + TSS region transcription start site region 46550
Tssr46551 5 66898477 to 66898494 17 + TSS region transcription start site region 46551
Gm21047 5 66902860 to 66904105 1245 - pseudogene predicted gene, 21047
Gm43281 5 66916008 to 66918711 2703 + unclassified gene predicted gene 43281
Tssr46552 5 66958599 to 66958604 5 + TSS region transcription start site region 46552
Tssr1500 5 66962679 to 66962705 26 + TSS region transcription start site region 1500
Tssr46553 5 66968421 to 66968447 26 + TSS region transcription start site region 46553
Tssr46554 5 66968532 to 66968546 14 + TSS region transcription start site region 46554
Tssr46555 5 66968559 to 66968575 16 + TSS region transcription start site region 46555
Tssr46556 5 66969109 to 66969132 23 + TSS region transcription start site region 46556
Gm43282 5 66969429 to 66971585 2156 + unclassified gene predicted gene 43282
Tssr46557 5 66977012 to 66977037 25 + TSS region transcription start site region 46557
Gm15949 5 66985091 to 66985641 550 - antisense lncRNA gene predicted gene 15949
Gm15948 5 66988816 to 66991207 2391 - antisense lncRNA gene predicted gene 15948
Cpgi15917 5 66997005 to 66997278 273 CpG island CpG island 15917
Tssr46558 5 66997031 to 66997068 37 + TSS region transcription start site region 46558
Tssr46559 5 66997086 to 66997135 49 + TSS region transcription start site region 46559
Tssr46560 5 66998617 to 66998640 23 + TSS region transcription start site region 46560
Gm33040 5 66999476 to 67001871 2395 + lncRNA gene predicted gene, 33040
Tssr46561 5 67028799 to 67028821 22 + TSS region transcription start site region 46561
Gm42713 5 67038432 to 67039376 944 - unclassified gene predicted gene 42713
Gm23841 5 67053679 to 67053792 113 - miRNA gene predicted gene, 23841
Tssr46562 5 67054462 to 67054469 7 + TSS region transcription start site region 46562
Tssr46563 5 67054765 to 67054775 10 + TSS region transcription start site region 46563
Phox2b 5 67094397 to 67099126 4729 - protein coding gene paired-like homeobox 2b
Tssr51221 5 67094871 to 67094879 8 - TSS region transcription start site region 51221
Cpgi15918 5 67095746 to 67096820 1074 CpG island CpG island 15918
Tssr51222 5 67095994 to 67095996 2 - TSS region transcription start site region 51222
Cpgi15919 5 67097511 to 67097981 470 CpG island CpG island 15919
Cpgi15920 5 67098583 to 67098888 305 CpG island CpG island 15920
Tssr46564 5 67098671 to 67098686 15 + TSS region transcription start site region 46564
Tssr51223 5 67099045 to 67099063 18 - TSS region transcription start site region 51223
Tssr51224 5 67099094 to 67099103 9 - TSS region transcription start site region 51224
Tssr51225 5 67099107 to 67099118 11 - TSS region transcription start site region 51225
Tssr51226 5 67099152 to 67099165 13 - TSS region transcription start site region 51226
Tssr51227 5 67099173 to 67099182 9 - TSS region transcription start site region 51227
Tssr51228 5 67099208 to 67099219 11 - TSS region transcription start site region 51228
Tssr51229 5 67099235 to 67099255 20 - TSS region transcription start site region 51229
Cpgi15921 5 67100589 to 67100815 226 CpG island CpG island 15921
Gm33167 5 67127503 to 67130145 2642 + lncRNA gene predicted gene, 33167
D5Mit234 5 67135262 to 67135399 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 234
Cpgi15922 5 67188305 to 67188567 262 CpG island CpG island 15922
Tssr46565 5 67205809 to 67205820 11 + TSS region transcription start site region 46565
Cpgi15923 5 67215454 to 67215700 246 CpG island CpG island 15923
Cpgi15924 5 67216154 to 67216927 773 CpG island CpG island 15924
Gm33293 5 67220873 to 67231889 11016 - lncRNA gene predicted gene, 33293
Cpgi15925 5 67222565 to 67223028 463 CpG island CpG island 15925
Cpgi15926 5 67227815 to 67227984 169 CpG island CpG island 15926
Cpgi15927 5 67228470 to 67228763 293 CpG island CpG island 15927
Cpgi15928 5 67230531 to 67231356 825 CpG island CpG island 15928
Tssr51230 5 67231683 to 67231686 3 - TSS region transcription start site region 51230
Gm40314 5 67243802 to 67250234 6432 - lncRNA gene predicted gene, 40314
Cpgi15929 5 67246464 to 67246724 260 CpG island CpG island 15929
Gm42670 5 67259971 to 67261262 1291 - antisense lncRNA gene predicted gene 42670
Cpgi15930 5 67260463 to 67261363 900 CpG island CpG island 15930
Tmem33 5 67260565 to 67291461 30896 + protein coding gene transmembrane protein 33
Tssr46566 5 67260671 to 67260692 21 + TSS region transcription start site region 46566
Tssr46567 5 67260697 to 67260711 14 + TSS region transcription start site region 46567
Tssr1501 5 67260716 to 67260720 4 + TSS region transcription start site region 1501
Tssr46568 5 67260725 to 67260741 16 + TSS region transcription start site region 46568
Tssr46569 5 67260744 to 67260779 35 + TSS region transcription start site region 46569
Tssr46570 5 67260794 to 67260814 20 + TSS region transcription start site region 46570
Tssr46571 5 67260818 to 67260827 9 + TSS region transcription start site region 46571
Tssr46572 5 67260925 to 67260970 45 + TSS region transcription start site region 46572
Tssr51231 5 67261068 to 67261114 46 - TSS region transcription start site region 51231
Tssr51232 5 67269477 to 67269490 13 - TSS region transcription start site region 51232
Tssr51233 5 67269498 to 67269505 7 - TSS region transcription start site region 51233
Tssr46573 5 67287441 to 67287446 5 + TSS region transcription start site region 46573
D5Ncnp3 5 67295278 to 67295656 378 DNA segment DNA segment, Chr 5, National Center of Neurology and Psychiatry 3
Cpgi15931 5 67306541 to 67307671 1130 CpG island CpG island 15931
Slc30a9 5 67306937 to 67356834 49897 + protein coding gene solute carrier family 30 (zinc transporter), member 9
Tssr46574 5 67306941 to 67306977 36 + TSS region transcription start site region 46574
Tssr46575 5 67306978 to 67307014 36 + TSS region transcription start site region 46575
Tssr46576 5 67307024 to 67307033 9 + TSS region transcription start site region 46576
Tssr46577 5 67315786 to 67315806 20 + TSS region transcription start site region 46577
Tssr46578 5 67360367 to 67360377 10 + TSS region transcription start site region 46578
Gm43698 5 67360387 to 67366599 6212 + lincRNA gene predicted gene 43698
9430027B09Rik 5 67381178 to 67382135 957 unclassified gene RIKEN cDNA 9430027B09 gene
Bend4 5 67392147 to 67428310 36163 - protein coding gene BEN domain containing 4
D5Ncnp4 5 67393832 to 67393978 146 DNA segment DNA segment, Chr 5, National Center of Neurology and Psychiatry 4
Tssr51234 5 67394355 to 67394359 4 - TSS region transcription start site region 51234
Tssr46579 5 67395706 to 67395711 5 + TSS region transcription start site region 46579
Tssr46580 5 67404602 to 67404614 12 + TSS region transcription start site region 46580
Gm33345 5 67405468 to 67417978 12510 + lncRNA gene predicted gene, 33345
Tssr51235 5 67425160 to 67425164 4 - TSS region transcription start site region 51235
Tssr51236 5 67425632 to 67425654 22 - TSS region transcription start site region 51236
Cpgi15932 5 67426219 to 67428348 2129 CpG island CpG island 15932
Tssr46581 5 67426785 to 67426801 16 + TSS region transcription start site region 46581
Tssr51237 5 67427586 to 67427593 7 - TSS region transcription start site region 51237
Tssr51238 5 67427674 to 67427691 17 - TSS region transcription start site region 51238
Gm26756 5 67427680 to 67437990 10310 + antisense lncRNA gene predicted gene, 26756
Tssr51239 5 67427699 to 67427776 77 - TSS region transcription start site region 51239
Tssr51240 5 67427794 to 67427813 19 - TSS region transcription start site region 51240
Gm42632 5 67427993 to 67430403 2410 + unclassified gene predicted gene 42632
Tssr51241 5 67428038 to 67428053 15 - TSS region transcription start site region 51241
Tssr51242 5 67428059 to 67428095 36 - TSS region transcription start site region 51242
Tssr51243 5 67428100 to 67428138 38 - TSS region transcription start site region 51243
Tssr46582 5 67450469 to 67450506 37 + TSS region transcription start site region 46582
Gm40315 5 67450493 to 67457308 6815 + lncRNA gene predicted gene, 40315
Tssr46583 5 67450513 to 67450550 37 + TSS region transcription start site region 46583
Tssr46584 5 67450624 to 67450633 9 + TSS region transcription start site region 46584
Tssr46585 5 67453466 to 67453469 3 + TSS region transcription start site region 46585
Gm20072 5 67453479 to 67453770 291 + pseudogene predicted gene, 20072
Tssr46586 5 67463886 to 67463937 51 + TSS region transcription start site region 46586
C330024D21Rik 5 67463897 to 67477632 13735 + lncRNA gene RIKEN cDNA C330024D21 gene
Tssr1502 5 67473923 to 67473926 3 + TSS region transcription start site region 1502
Cpgi15933 5 67607191 to 67608998 1807 CpG island CpG island 15933
1700025A08Rik 5 67607218 to 67607826 608 - unclassified gene RIKEN cDNA 1700025A08 gene
Tssr46587 5 67607873 to 67607889 16 + TSS region transcription start site region 46587
Shisa3 5 67607883 to 67613987 6104 + protein coding gene shisa family member 3
Tssr46588 5 67607997 to 67608008 11 + TSS region transcription start site region 46588
Tssr51244 5 67608239 to 67608262 23 - TSS region transcription start site region 51244
Tssr46589 5 67608364 to 67608395 31 + TSS region transcription start site region 46589
Tssr46590 5 67608530 to 67608540 10 + TSS region transcription start site region 46590
Tssr46591 5 67608580 to 67608614 34 + TSS region transcription start site region 46591
Tssr46592 5 67611333 to 67611341 8 + TSS region transcription start site region 46592
Tssr46593 5 67613203 to 67613223 20 + TSS region transcription start site region 46593
Atp8a1 5 67618140 to 67847434 229294 - protein coding gene ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
Tssr51245 5 67619421 to 67619425 4 - TSS region transcription start site region 51245
Gm23617 5 67631825 to 67631919 94 - miRNA gene predicted gene, 23617
Gm42735 5 67633663 to 67635308 1645 - unclassified gene predicted gene 42735
Tssr46594 5 67639883 to 67639893 10 + TSS region transcription start site region 46594
Tssr46595 5 67642168 to 67642202 34 + TSS region transcription start site region 46595
Gm15478 5 67642401 to 67646776 4375 + antisense lncRNA gene predicted gene 15478
Gm46914 5 67697664 to 67702536 4872 - lncRNA gene predicted gene, 46914
Tssr51246 5 67697751 to 67697799 48 - TSS region transcription start site region 51246