Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:66672732-67042756

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Uchl1os 5 66626495 to 66676497 50002 - antisense lncRNA gene ubiquitin carboxy-terminal hydrolase L1, opposite strand
Uchl1 5 66676121 to 66687234 11113 + protein coding gene ubiquitin carboxy-terminal hydrolase L1
Tssr46533 5 66676200 to 66676221 21 + TSS region transcription start site region 46533
Cpgi15914 5 66676201 to 66677126 925 CpG island CpG island 15914
Tssr46534 5 66676231 to 66676257 26 + TSS region transcription start site region 46534
Tssr46535 5 66677003 to 66677031 28 + TSS region transcription start site region 46535
Tssr46536 5 66686198 to 66686203 5 + TSS region transcription start site region 46536
Tssr46537 5 66686884 to 66686893 9 + TSS region transcription start site region 46537
Tssr46538 5 66686934 to 66686956 22 + TSS region transcription start site region 46538
Gm43279 5 66688882 to 66691393 2511 + unclassified gene predicted gene 43279
Tssr51220 5 66689917 to 66689966 49 - TSS region transcription start site region 51220
4933424C09Rik 5 66718369 to 66719918 1549 unclassified gene RIKEN cDNA 4933424C09 gene
Gm43280 5 66718370 to 66719919 1549 + unclassified gene predicted gene 43280
Tssr1499 5 66719916 to 66719923 7 - TSS region transcription start site region 1499
D5Ncnp1 5 66731742 to 66731916 174 DNA segment DNA segment, Chr 5, National Center of Neurology and Psychiatry 1
Cpgi15915 5 66745126 to 66746735 1609 CpG island CpG island 15915
Tssr46539 5 66745396 to 66745407 11 + TSS region transcription start site region 46539
Tssr46540 5 66745422 to 66745440 18 + TSS region transcription start site region 46540
Tssr46541 5 66745496 to 66745510 14 + TSS region transcription start site region 46541
Tssr46542 5 66745832 to 66745837 5 + TSS region transcription start site region 46542
Limch1 5 66745840 to 67057159 311319 + protein coding gene LIM and calponin homology domains 1
Tssr46543 5 66745856 to 66745896 40 + TSS region transcription start site region 46543
Tssr46544 5 66770935 to 66770942 7 + TSS region transcription start site region 46544
Cpgi15916 5 66802220 to 66802407 187 CpG island CpG island 15916
D5Mit110 5 66808327 to 66808467 140 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 110
Tssr46545 5 66853404 to 66853432 28 + TSS region transcription start site region 46545
Tssr46546 5 66857457 to 66857475 18 + TSS region transcription start site region 46546
Tssr46547 5 66857732 to 66857756 24 + TSS region transcription start site region 46547
Tssr46548 5 66890264 to 66890282 18 + TSS region transcription start site region 46548
Tssr46549 5 66890325 to 66890329 4 + TSS region transcription start site region 46549
Gm6517 5 66890366 to 66890876 510 + pseudogene predicted gene 6517
Tssr46550 5 66898410 to 66898463 53 + TSS region transcription start site region 46550
Tssr46551 5 66898477 to 66898494 17 + TSS region transcription start site region 46551
Gm21047 5 66902860 to 66904105 1245 - pseudogene predicted gene, 21047
Gm43281 5 66916008 to 66918711 2703 + unclassified gene predicted gene 43281
Tssr46552 5 66958599 to 66958604 5 + TSS region transcription start site region 46552
Tssr1500 5 66962679 to 66962705 26 + TSS region transcription start site region 1500
Tssr46553 5 66968421 to 66968447 26 + TSS region transcription start site region 46553
Tssr46554 5 66968532 to 66968546 14 + TSS region transcription start site region 46554
Tssr46555 5 66968559 to 66968575 16 + TSS region transcription start site region 46555
Tssr46556 5 66969109 to 66969132 23 + TSS region transcription start site region 46556
Gm43282 5 66969429 to 66971585 2156 + unclassified gene predicted gene 43282
Tssr46557 5 66977012 to 66977037 25 + TSS region transcription start site region 46557
Gm15949 5 66985091 to 66985641 550 - antisense lncRNA gene predicted gene 15949
Gm15948 5 66988816 to 66991207 2391 - antisense lncRNA gene predicted gene 15948
Cpgi15917 5 66997005 to 66997278 273 CpG island CpG island 15917
Tssr46558 5 66997031 to 66997068 37 + TSS region transcription start site region 46558
Tssr46559 5 66997086 to 66997135 49 + TSS region transcription start site region 46559
Tssr46560 5 66998617 to 66998640 23 + TSS region transcription start site region 46560
Gm33040 5 66999476 to 67001871 2395 + lncRNA gene predicted gene, 33040
Tssr46561 5 67028799 to 67028821 22 + TSS region transcription start site region 46561
Gm42713 5 67038432 to 67039376 944 - unclassified gene predicted gene 42713