Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:66546884-66826893

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Apbb2 5 66298703 to 66618784 320081 - protein coding gene amyloid beta (A4) precursor protein-binding, family B, member 2
C530043K16Rik 5 66592462 to 66595570 3108 - unclassified non-coding RNA gene RIKEN cDNA C530043K16 gene
Tssr51215 5 66593437 to 66593458 21 - TSS region transcription start site region 51215
Tssr51216 5 66593518 to 66593532 14 - TSS region transcription start site region 51216
Cpgi15911 5 66594616 to 66594884 268 CpG island CpG island 15911
Cpgi15912 5 66617830 to 66619060 1230 CpG island CpG island 15912
Tssr51217 5 66618636 to 66618711 75 - TSS region transcription start site region 51217
Tssr51218 5 66618752 to 66618770 18 - TSS region transcription start site region 51218
Tssr51219 5 66618772 to 66618807 35 - TSS region transcription start site region 51219
Cpgi15913 5 66620121 to 66620703 582 CpG island CpG island 15913
Uchl1os 5 66626495 to 66676497 50002 - antisense lncRNA gene ubiquitin carboxy-terminal hydrolase L1, opposite strand
Uchl1 5 66676121 to 66687234 11113 + protein coding gene ubiquitin carboxy-terminal hydrolase L1
Tssr46533 5 66676200 to 66676221 21 + TSS region transcription start site region 46533
Cpgi15914 5 66676201 to 66677126 925 CpG island CpG island 15914
Tssr46534 5 66676231 to 66676257 26 + TSS region transcription start site region 46534
Tssr46535 5 66677003 to 66677031 28 + TSS region transcription start site region 46535
Tssr46536 5 66686198 to 66686203 5 + TSS region transcription start site region 46536
Tssr46537 5 66686884 to 66686893 9 + TSS region transcription start site region 46537
Tssr46538 5 66686934 to 66686956 22 + TSS region transcription start site region 46538
Gm43279 5 66688882 to 66691393 2511 + unclassified gene predicted gene 43279
Tssr51220 5 66689917 to 66689966 49 - TSS region transcription start site region 51220
4933424C09Rik 5 66718369 to 66719918 1549 unclassified gene RIKEN cDNA 4933424C09 gene
Gm43280 5 66718370 to 66719919 1549 + unclassified gene predicted gene 43280
Tssr1499 5 66719916 to 66719923 7 - TSS region transcription start site region 1499
D5Ncnp1 5 66731742 to 66731916 174 DNA segment DNA segment, Chr 5, National Center of Neurology and Psychiatry 1
Cpgi15915 5 66745126 to 66746735 1609 CpG island CpG island 15915
Tssr46539 5 66745396 to 66745407 11 + TSS region transcription start site region 46539
Tssr46540 5 66745422 to 66745440 18 + TSS region transcription start site region 46540
Tssr46541 5 66745496 to 66745510 14 + TSS region transcription start site region 46541
Tssr46542 5 66745832 to 66745837 5 + TSS region transcription start site region 46542
Limch1 5 66745840 to 67057159 311319 + protein coding gene LIM and calponin homology domains 1
Tssr46543 5 66745856 to 66745896 40 + TSS region transcription start site region 46543
Tssr46544 5 66770935 to 66770942 7 + TSS region transcription start site region 46544
Cpgi15916 5 66802220 to 66802407 187 CpG island CpG island 15916
D5Mit110 5 66808327 to 66808467 140 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 110