Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:65960121-67280703

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233 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Chrna9 5 65934921 to 65977326 42405 + protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 9
Gm43771 5 65963851 to 65965428 1577 + unclassified gene predicted gene 43771
Tssr46515 5 65966948 to 65966952 4 + TSS region transcription start site region 46515
Tssr46516 5 65967346 to 65967381 35 + TSS region transcription start site region 46516
Tssr46517 5 65967384 to 65967401 17 + TSS region transcription start site region 46517
Tssr51152 5 65975648 to 65975688 40 - TSS region transcription start site region 51152
Tssr46518 5 65975850 to 65975866 16 + TSS region transcription start site region 46518
Tssr46519 5 65975882 to 65975893 11 + TSS region transcription start site region 46519
Tssr46520 5 65975978 to 65975989 11 + TSS region transcription start site region 46520
9130230L23Rik 5 65987928 to 66004285 16357 - protein coding gene RIKEN cDNA 9130230L23 gene
Gm25952 5 65989045 to 65989118 73 + miRNA gene predicted gene, 25952
Tssr51153 5 65990157 to 65990182 25 - TSS region transcription start site region 51153
Tssr51154 5 65991234 to 65991246 12 - TSS region transcription start site region 51154
Tssr46521 5 65991491 to 65991511 20 + TSS region transcription start site region 46521
Tssr51155 5 66001327 to 66001347 20 - TSS region transcription start site region 51155
Tssr51156 5 66001356 to 66001390 34 - TSS region transcription start site region 51156
Tssr51157 5 66003601 to 66003605 4 - TSS region transcription start site region 51157
Tssr51158 5 66004278 to 66004291 13 - TSS region transcription start site region 51158
Gm40310 5 66008325 to 66010377 2052 - lncRNA gene predicted gene, 40310
Rbm47 5 66016549 to 66151954 135405 - protein coding gene RNA binding motif protein 47
Tssr51159 5 66017618 to 66017622 4 - TSS region transcription start site region 51159
Tssr51160 5 66018560 to 66018575 15 - TSS region transcription start site region 51160
Tssr51161 5 66019005 to 66019009 4 - TSS region transcription start site region 51161
Cpgi15903 5 66019170 to 66019462 292 CpG island CpG island 15903
Tssr51162 5 66019266 to 66019293 27 - TSS region transcription start site region 51162
Tssr51163 5 66019422 to 66019434 12 - TSS region transcription start site region 51163
Tssr51164 5 66022701 to 66022723 22 - TSS region transcription start site region 51164
Tssr51165 5 66025063 to 66025090 27 - TSS region transcription start site region 51165
D5Ertd700e 5 66025550 to 66025792 242 DNA segment DNA segment, Chr 5, ERATO Doi 700, expressed
Cpgi15904 5 66026115 to 66027270 1155 CpG island CpG island 15904
D5Mit258 5 66042304 to 66042428 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 258
Tssr51166 5 66042641 to 66042645 4 - TSS region transcription start site region 51166
Tssr51167 5 66048519 to 66048523 4 - TSS region transcription start site region 51167
Tssr51168 5 66050357 to 66050369 12 - TSS region transcription start site region 51168
Tssr51169 5 66052753 to 66052775 22 - TSS region transcription start site region 51169
Tssr46522 5 66053125 to 66053136 11 + TSS region transcription start site region 46522
Tssr46523 5 66053138 to 66053149 11 + TSS region transcription start site region 46523
Tssr51170 5 66054499 to 66054561 62 - TSS region transcription start site region 51170
Gm43775 5 66069501 to 66072895 3394 - unclassified gene predicted gene 43775
Cpgi15905 5 66069581 to 66069954 373 CpG island CpG island 15905
Tssr1497 5 66069967 to 66069984 17 - TSS region transcription start site region 1497
D5Dcr46 5 66075450 to 66075547 97 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 46
Gm43323 5 66080209 to 66084466 4257 - unclassified gene predicted gene 43323
D5Ertd77e 5 66080244 to 66080473 229 DNA segment DNA segment, Chr 5, ERATO Doi 77, expressed
Tssr51171 5 66080971 to 66081009 38 - TSS region transcription start site region 51171
Tssr51172 5 66081803 to 66081816 13 - TSS region transcription start site region 51172
Tssr1498 5 66082304 to 66082311 7 - TSS region transcription start site region 1498
D5Dcr47 5 66083904 to 66084000 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 47
Tssr51173 5 66084696 to 66084700 4 - TSS region transcription start site region 51173
D5Ertd163e 5 66096020 to 66096229 209 DNA segment DNA segment, Chr 5, ERATO Doi 163, expressed
Tssr46524 5 66106214 to 66106232 18 + TSS region transcription start site region 46524
Tssr51174 5 66122647 to 66122658 11 - TSS region transcription start site region 51174
Tssr51175 5 66131968 to 66131999 31 - TSS region transcription start site region 51175
Tssr51176 5 66132132 to 66132157 25 - TSS region transcription start site region 51176
Tssr51177 5 66133711 to 66133745 34 - TSS region transcription start site region 51177
Tssr51178 5 66136078 to 66136091 13 - TSS region transcription start site region 51178
Tssr51179 5 66142456 to 66142463 7 - TSS region transcription start site region 51179
Tssr51180 5 66142943 to 66142965 22 - TSS region transcription start site region 51180
Tssr51181 5 66145745 to 66145746 1 - TSS region transcription start site region 51181
Tssr51182 5 66146803 to 66146814 11 - TSS region transcription start site region 51182
Tssr51183 5 66147562 to 66147584 22 - TSS region transcription start site region 51183
Cpgi15906 5 66150669 to 66151686 1017 CpG island CpG island 15906
Tssr51184 5 66150672 to 66150707 35 - TSS region transcription start site region 51184
Tssr46525 5 66150785 to 66150810 25 + TSS region transcription start site region 46525
Tssr51185 5 66150906 to 66150960 54 - TSS region transcription start site region 51185
Tssr51186 5 66151188 to 66151197 9 - TSS region transcription start site region 51186
Gm26725 5 66151212 to 66174945 23733 + antisense lncRNA gene predicted gene, 26725
Tssr51187 5 66151305 to 66151308 3 - TSS region transcription start site region 51187
Tssr51188 5 66151332 to 66151343 11 - TSS region transcription start site region 51188
Tssr51189 5 66151362 to 66151375 13 - TSS region transcription start site region 51189
Tssr51190 5 66151391 to 66151400 9 - TSS region transcription start site region 51190
Tssr51191 5 66151530 to 66151541 11 - TSS region transcription start site region 51191
Tssr51192 5 66151648 to 66151681 33 - TSS region transcription start site region 51192
Tssr51193 5 66151684 to 66151695 11 - TSS region transcription start site region 51193
Tssr51194 5 66151719 to 66151728 9 - TSS region transcription start site region 51194
Tssr51195 5 66151857 to 66151866 9 - TSS region transcription start site region 51195
Tssr51196 5 66151903 to 66151962 59 - TSS region transcription start site region 51196
Gm22929 5 66164556 to 66164662 106 - snRNA gene predicted gene, 22929
1700126H18Rik 5 66166607 to 66191335 24728 - antisense lncRNA gene RIKEN cDNA 1700126H18 gene
Gm40311 5 66171692 to 66172207 515 - lncRNA gene predicted gene, 40311
Tssr51197 5 66173051 to 66173058 7 - TSS region transcription start site region 51197
Gm43772 5 66174965 to 66175343 378 - pseudogene predicted gene 43772
Tssr46526 5 66195577 to 66195585 8 + TSS region transcription start site region 46526
Tssr46527 5 66195599 to 66195608 9 + TSS region transcription start site region 46527
Gm15794 5 66197878 to 66198911 1033 - pseudogene predicted gene 15794
Tssr51198 5 66214544 to 66214545 1 - TSS region transcription start site region 51198
Gm3822 5 66214747 to 66217681 2934 + protein coding gene predicted gene 3822
Tssr46528 5 66215759 to 66215807 48 + TSS region transcription start site region 46528
D5Dcr67 5 66221079 to 66221174 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 67
Cpgi15907 5 66223035 to 66223417 382 CpG island CpG island 15907
D5Dcr68 5 66246456 to 66246551 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 68
Cpgi15908 5 66259812 to 66260399 587 CpG island CpG island 15908
Tssr46529 5 66259863 to 66259887 24 + TSS region transcription start site region 46529
Tssr46530 5 66259890 to 66259904 14 + TSS region transcription start site region 46530
Nsun7 5 66259897 to 66298026 38129 + protein coding gene NOL1/NOP2/Sun domain family, member 7
Tssr46531 5 66260116 to 66260120 4 + TSS region transcription start site region 46531
Tssr46532 5 66260121 to 66260170 49 + TSS region transcription start site region 46532
Apbb2 5 66298703 to 66618784 320081 - protein coding gene amyloid beta (A4) precursor protein-binding, family B, member 2
Tssr51199 5 66299331 to 66299342 11 - TSS region transcription start site region 51199
Tssr51200 5 66299367 to 66299382 15 - TSS region transcription start site region 51200
Tssr51201 5 66299400 to 66299419 19 - TSS region transcription start site region 51201
Tssr51202 5 66299924 to 66299932 8 - TSS region transcription start site region 51202
Gm43790 5 66321005 to 66323017 2012 - unclassified gene predicted gene 43790
Tssr51203 5 66323701 to 66323713 12 - TSS region transcription start site region 51203
Tssr51204 5 66323728 to 66323748 20 - TSS region transcription start site region 51204
Gm23183 5 66325740 to 66326062 322 - unclassified non-coding RNA gene predicted gene, 23183
Tssr51205 5 66333434 to 66333437 3 - TSS region transcription start site region 51205
Cpgi15909 5 66337312 to 66337824 512 CpG island CpG island 15909
Tssr51206 5 66337625 to 66337646 21 - TSS region transcription start site region 51206
Tssr51207 5 66337647 to 66337677 30 - TSS region transcription start site region 51207
Gm43793 5 66345893 to 66347225 1332 - unclassified gene predicted gene 43793
Gm16273 5 66356918 to 66357185 267 + pseudogene predicted gene 16273
Tssr51208 5 66416859 to 66416865 6 - TSS region transcription start site region 51208
Gm43792 5 66429917 to 66432126 2209 - unclassified gene predicted gene 43792
Gm43794 5 66443732 to 66444423 691 - unclassified gene predicted gene 43794
Tssr51209 5 66451651 to 66451664 13 - TSS region transcription start site region 51209
Cpgi15910 5 66466188 to 66466706 518 CpG island CpG island 15910
D5Dcr48 5 66485240 to 66485338 98 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 48
Tssr51210 5 66492091 to 66492103 12 - TSS region transcription start site region 51210
Tssr51211 5 66492118 to 66492148 30 - TSS region transcription start site region 51211
Tssr51212 5 66514815 to 66514837 22 - TSS region transcription start site region 51212
Gm43343 5 66524187 to 66526112 1925 - unclassified gene predicted gene 43343
Tssr51213 5 66524641 to 66524660 19 - TSS region transcription start site region 51213
D5Dcr45 5 66530286 to 66530381 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 45
Gm43795 5 66531796 to 66534161 2365 - unclassified gene predicted gene 43795
Tssr51214 5 66543910 to 66543931 21 - TSS region transcription start site region 51214
C530043K16Rik 5 66592462 to 66595570 3108 - unclassified non-coding RNA gene RIKEN cDNA C530043K16 gene
Tssr51215 5 66593437 to 66593458 21 - TSS region transcription start site region 51215
Tssr51216 5 66593518 to 66593532 14 - TSS region transcription start site region 51216
Cpgi15911 5 66594616 to 66594884 268 CpG island CpG island 15911
Cpgi15912 5 66617830 to 66619060 1230 CpG island CpG island 15912
Tssr51217 5 66618636 to 66618711 75 - TSS region transcription start site region 51217
Tssr51218 5 66618752 to 66618770 18 - TSS region transcription start site region 51218
Tssr51219 5 66618772 to 66618807 35 - TSS region transcription start site region 51219
Cpgi15913 5 66620121 to 66620703 582 CpG island CpG island 15913
Uchl1os 5 66626495 to 66676497 50002 - antisense lncRNA gene ubiquitin carboxy-terminal hydrolase L1, opposite strand
Uchl1 5 66676121 to 66687234 11113 + protein coding gene ubiquitin carboxy-terminal hydrolase L1
Tssr46533 5 66676200 to 66676221 21 + TSS region transcription start site region 46533
Cpgi15914 5 66676201 to 66677126 925 CpG island CpG island 15914
Tssr46534 5 66676231 to 66676257 26 + TSS region transcription start site region 46534
Tssr46535 5 66677003 to 66677031 28 + TSS region transcription start site region 46535
Tssr46536 5 66686198 to 66686203 5 + TSS region transcription start site region 46536
Tssr46537 5 66686884 to 66686893 9 + TSS region transcription start site region 46537
Tssr46538 5 66686934 to 66686956 22 + TSS region transcription start site region 46538
Gm43279 5 66688882 to 66691393 2511 + unclassified gene predicted gene 43279
Tssr51220 5 66689917 to 66689966 49 - TSS region transcription start site region 51220
4933424C09Rik 5 66718369 to 66719918 1549 unclassified gene RIKEN cDNA 4933424C09 gene
Gm43280 5 66718370 to 66719919 1549 + unclassified gene predicted gene 43280
Tssr1499 5 66719916 to 66719923 7 - TSS region transcription start site region 1499
D5Ncnp1 5 66731742 to 66731916 174 DNA segment DNA segment, Chr 5, National Center of Neurology and Psychiatry 1
Cpgi15915 5 66745126 to 66746735 1609 CpG island CpG island 15915
Tssr46539 5 66745396 to 66745407 11 + TSS region transcription start site region 46539
Tssr46540 5 66745422 to 66745440 18 + TSS region transcription start site region 46540
Tssr46541 5 66745496 to 66745510 14 + TSS region transcription start site region 46541
Tssr46542 5 66745832 to 66745837 5 + TSS region transcription start site region 46542
Limch1 5 66745840 to 67057159 311319 + protein coding gene LIM and calponin homology domains 1
Tssr46543 5 66745856 to 66745896 40 + TSS region transcription start site region 46543
Tssr46544 5 66770935 to 66770942 7 + TSS region transcription start site region 46544
Cpgi15916 5 66802220 to 66802407 187 CpG island CpG island 15916
D5Mit110 5 66808327 to 66808467 140 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 110
Tssr46545 5 66853404 to 66853432 28 + TSS region transcription start site region 46545
Tssr46546 5 66857457 to 66857475 18 + TSS region transcription start site region 46546
Tssr46547 5 66857732 to 66857756 24 + TSS region transcription start site region 46547
Tssr46548 5 66890264 to 66890282 18 + TSS region transcription start site region 46548
Tssr46549 5 66890325 to 66890329 4 + TSS region transcription start site region 46549
Gm6517 5 66890366 to 66890876 510 + pseudogene predicted gene 6517
Tssr46550 5 66898410 to 66898463 53 + TSS region transcription start site region 46550
Tssr46551 5 66898477 to 66898494 17 + TSS region transcription start site region 46551
Gm21047 5 66902860 to 66904105 1245 - pseudogene predicted gene, 21047
Gm43281 5 66916008 to 66918711 2703 + unclassified gene predicted gene 43281
Tssr46552 5 66958599 to 66958604 5 + TSS region transcription start site region 46552
Tssr1500 5 66962679 to 66962705 26 + TSS region transcription start site region 1500
Tssr46553 5 66968421 to 66968447 26 + TSS region transcription start site region 46553
Tssr46554 5 66968532 to 66968546 14 + TSS region transcription start site region 46554
Tssr46555 5 66968559 to 66968575 16 + TSS region transcription start site region 46555
Tssr46556 5 66969109 to 66969132 23 + TSS region transcription start site region 46556
Gm43282 5 66969429 to 66971585 2156 + unclassified gene predicted gene 43282
Tssr46557 5 66977012 to 66977037 25 + TSS region transcription start site region 46557
Gm15949 5 66985091 to 66985641 550 - antisense lncRNA gene predicted gene 15949
Gm15948 5 66988816 to 66991207 2391 - antisense lncRNA gene predicted gene 15948
Cpgi15917 5 66997005 to 66997278 273 CpG island CpG island 15917
Tssr46558 5 66997031 to 66997068 37 + TSS region transcription start site region 46558
Tssr46559 5 66997086 to 66997135 49 + TSS region transcription start site region 46559
Tssr46560 5 66998617 to 66998640 23 + TSS region transcription start site region 46560
Gm33040 5 66999476 to 67001871 2395 + lncRNA gene predicted gene, 33040
Tssr46561 5 67028799 to 67028821 22 + TSS region transcription start site region 46561
Gm42713 5 67038432 to 67039376 944 - unclassified gene predicted gene 42713
Gm23841 5 67053679 to 67053792 113 - miRNA gene predicted gene, 23841
Tssr46562 5 67054462 to 67054469 7 + TSS region transcription start site region 46562
Tssr46563 5 67054765 to 67054775 10 + TSS region transcription start site region 46563
Phox2b 5 67094397 to 67099126 4729 - protein coding gene paired-like homeobox 2b
Tssr51221 5 67094871 to 67094879 8 - TSS region transcription start site region 51221
Cpgi15918 5 67095746 to 67096820 1074 CpG island CpG island 15918
Tssr51222 5 67095994 to 67095996 2 - TSS region transcription start site region 51222
Cpgi15919 5 67097511 to 67097981 470 CpG island CpG island 15919
Cpgi15920 5 67098583 to 67098888 305 CpG island CpG island 15920
Tssr46564 5 67098671 to 67098686 15 + TSS region transcription start site region 46564
Tssr51223 5 67099045 to 67099063 18 - TSS region transcription start site region 51223
Tssr51224 5 67099094 to 67099103 9 - TSS region transcription start site region 51224
Tssr51225 5 67099107 to 67099118 11 - TSS region transcription start site region 51225