Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:65653519-66443523

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197 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pds5a 5 65607777 to 65698163 90386 - protein coding gene PDS5 cohesin associated factor A
Gm24399 5 65660806 to 65660879 73 + snRNA gene predicted gene, 24399
Gm42728 5 65672609 to 65674160 1551 - unclassified gene predicted gene 42728
Tssr51127 5 65679871 to 65679875 4 - TSS region transcription start site region 51127
C030017G13Rik 5 65680014 to 65682344 2330 - unclassified gene RIKEN cDNA C030017G13 gene
Tssr51128 5 65693253 to 65693257 4 - TSS region transcription start site region 51128
Cpgi15901 5 65696677 to 65698730 2053 CpG island CpG island 15901
Tssr51129 5 65697833 to 65697848 15 - TSS region transcription start site region 51129
Tssr51130 5 65697896 to 65697963 67 - TSS region transcription start site region 51130
Tssr51131 5 65697967 to 65697990 23 - TSS region transcription start site region 51131
Tssr51132 5 65698171 to 65698253 82 - TSS region transcription start site region 51132
Gm46945 5 65745452 to 65757011 11559 - lncRNA gene predicted gene, 46945
Tssr51133 5 65752141 to 65752186 45 - TSS region transcription start site region 51133
N4bp2os 5 65760991 to 65764379 3388 - unclassified non-coding RNA gene NEDD4 binding protein 2, opposite strand
Cpgi15902 5 65763150 to 65765140 1990 CpG island CpG island 15902
Tssr46479 5 65763310 to 65763349 39 + TSS region transcription start site region 46479
Tssr46480 5 65763518 to 65763541 23 + TSS region transcription start site region 46480
N4bp2 5 65763521 to 65830108 66587 + protein coding gene NEDD4 binding protein 2
Tssr46481 5 65763547 to 65763570 23 + TSS region transcription start site region 46481
Tssr46482 5 65763764 to 65763776 12 + TSS region transcription start site region 46482
Tssr51134 5 65763962 to 65763976 14 - TSS region transcription start site region 51134
Tssr46483 5 65763990 to 65764001 11 + TSS region transcription start site region 46483
Tssr46484 5 65764012 to 65764035 23 + TSS region transcription start site region 46484
Tssr46485 5 65764036 to 65764060 24 + TSS region transcription start site region 46485
Tssr46486 5 65764073 to 65764158 85 + TSS region transcription start site region 46486
Tssr51135 5 65764350 to 65764405 55 - TSS region transcription start site region 51135
Tssr51136 5 65764411 to 65764422 11 - TSS region transcription start site region 51136
Tssr51137 5 65765032 to 65765050 18 - TSS region transcription start site region 51137
Tssr46487 5 65767410 to 65767414 4 + TSS region transcription start site region 46487
Gm24346 5 65777014 to 65777207 193 + snoRNA gene predicted gene, 24346
Gm42648 5 65778014 to 65780518 2504 + unclassified gene predicted gene 42648
Tssr46488 5 65781412 to 65781443 31 + TSS region transcription start site region 46488
Tssr46489 5 65791111 to 65791124 13 + TSS region transcription start site region 46489
Gm3521 5 65837294 to 65858307 21013 - lncRNA gene predicted gene 3521
Tssr46490 5 65851058 to 65851070 12 + TSS region transcription start site region 46490
Tssr46491 5 65851135 to 65851146 11 + TSS region transcription start site region 46491
Gm42645 5 65853332 to 65854958 1626 + unclassified gene predicted gene 42645
Gm42646 5 65857318 to 65858231 913 + unclassified gene predicted gene 42646
Tssr51138 5 65858088 to 65858124 36 - TSS region transcription start site region 51138
Tssr51139 5 65858132 to 65858141 9 - TSS region transcription start site region 51139
Tssr51140 5 65858144 to 65858161 17 - TSS region transcription start site region 51140
Tssr46492 5 65858159 to 65858174 15 + TSS region transcription start site region 46492
Tssr46493 5 65858176 to 65858183 7 + TSS region transcription start site region 46493
Tssr51141 5 65858186 to 65858214 28 - TSS region transcription start site region 51141
Tssr51142 5 65858218 to 65858240 22 - TSS region transcription start site region 51142
Tssr51143 5 65858254 to 65858261 7 - TSS region transcription start site region 51143
Gm43004 5 65859317 to 65860019 702 + unclassified gene predicted gene 43004
Tssr1495 5 65860747 to 65860759 12 + TSS region transcription start site region 1495
Tssr46494 5 65860938 to 65860976 38 + TSS region transcription start site region 46494
Tssr46495 5 65861135 to 65861149 14 + TSS region transcription start site region 46495
Tssr46496 5 65861161 to 65861172 11 + TSS region transcription start site region 46496
Tssr46497 5 65861212 to 65861237 25 + TSS region transcription start site region 46497
Tssr46498 5 65861261 to 65861318 57 + TSS region transcription start site region 46498
Tssr46499 5 65861358 to 65861368 10 + TSS region transcription start site region 46499
Rhoh 5 65861403 to 65896700 35297 + protein coding gene ras homolog family member H
Tssr46500 5 65862650 to 65862653 3 + TSS region transcription start site region 46500
Tssr46501 5 65863268 to 65863294 26 + TSS region transcription start site region 46501
Tssr46502 5 65863563 to 65863650 87 + TSS region transcription start site region 46502
Tssr46503 5 65863653 to 65863656 3 + TSS region transcription start site region 46503
Tssr46504 5 65863775 to 65863795 20 + TSS region transcription start site region 46504
Tssr46505 5 65868256 to 65868270 14 + TSS region transcription start site region 46505
Tssr46506 5 65885733 to 65885737 4 + TSS region transcription start site region 46506
Tssr51144 5 65910520 to 65910544 24 - TSS region transcription start site region 51144
Tssr46507 5 65910660 to 65910677 17 + TSS region transcription start site region 46507
Gm32474 5 65911127 to 65913845 2718 - lncRNA gene predicted gene, 32474
Gm43769 5 65911624 to 65915946 4322 + unclassified gene predicted gene 43769
Tssr51145 5 65911853 to 65911862 9 - TSS region transcription start site region 51145
Tssr51146 5 65912324 to 65912349 25 - TSS region transcription start site region 51146
Tssr51147 5 65912368 to 65912392 24 - TSS region transcription start site region 51147
Gm32556 5 65914033 to 65919746 5713 - lncRNA gene predicted gene, 32556
Tssr51148 5 65918199 to 65918204 5 - TSS region transcription start site region 51148
Tssr51149 5 65926823 to 65926826 3 - TSS region transcription start site region 51149
Tssr51150 5 65929245 to 65929258 13 - TSS region transcription start site region 51150
Tssr1496 5 65934712 to 65934717 5 + TSS region transcription start site region 1496
Tssr46508 5 65934894 to 65934902 8 + TSS region transcription start site region 46508
Tssr46509 5 65934910 to 65934921 11 + TSS region transcription start site region 46509
Chrna9 5 65934921 to 65977326 42405 + protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 9
Tssr46510 5 65934922 to 65935006 84 + TSS region transcription start site region 46510
Tssr51151 5 65935657 to 65935660 3 - TSS region transcription start site region 51151
4930480C01Rik 5 65951305 to 65952205 900 + lncRNA gene RIKEN cDNA 4930480C01 gene
Tssr46511 5 65955637 to 65955646 9 + TSS region transcription start site region 46511
Tssr46512 5 65955653 to 65955664 11 + TSS region transcription start site region 46512
Tssr46513 5 65955673 to 65955680 7 + TSS region transcription start site region 46513
Tssr46514 5 65955697 to 65955704 7 + TSS region transcription start site region 46514
Gm43771 5 65963851 to 65965428 1577 + unclassified gene predicted gene 43771
Tssr46515 5 65966948 to 65966952 4 + TSS region transcription start site region 46515
Tssr46516 5 65967346 to 65967381 35 + TSS region transcription start site region 46516
Tssr46517 5 65967384 to 65967401 17 + TSS region transcription start site region 46517
Tssr51152 5 65975648 to 65975688 40 - TSS region transcription start site region 51152
Tssr46518 5 65975850 to 65975866 16 + TSS region transcription start site region 46518
Tssr46519 5 65975882 to 65975893 11 + TSS region transcription start site region 46519
Tssr46520 5 65975978 to 65975989 11 + TSS region transcription start site region 46520
9130230L23Rik 5 65987928 to 66004285 16357 - protein coding gene RIKEN cDNA 9130230L23 gene
Gm25952 5 65989045 to 65989118 73 + miRNA gene predicted gene, 25952
Tssr51153 5 65990157 to 65990182 25 - TSS region transcription start site region 51153
Tssr51154 5 65991234 to 65991246 12 - TSS region transcription start site region 51154
Tssr46521 5 65991491 to 65991511 20 + TSS region transcription start site region 46521
Tssr51155 5 66001327 to 66001347 20 - TSS region transcription start site region 51155
Tssr51156 5 66001356 to 66001390 34 - TSS region transcription start site region 51156
Tssr51157 5 66003601 to 66003605 4 - TSS region transcription start site region 51157
Tssr51158 5 66004278 to 66004291 13 - TSS region transcription start site region 51158
Gm40310 5 66008325 to 66010377 2052 - lncRNA gene predicted gene, 40310
Rbm47 5 66016549 to 66151954 135405 - protein coding gene RNA binding motif protein 47
Tssr51159 5 66017618 to 66017622 4 - TSS region transcription start site region 51159
Tssr51160 5 66018560 to 66018575 15 - TSS region transcription start site region 51160
Tssr51161 5 66019005 to 66019009 4 - TSS region transcription start site region 51161
Cpgi15903 5 66019170 to 66019462 292 CpG island CpG island 15903
Tssr51162 5 66019266 to 66019293 27 - TSS region transcription start site region 51162
Tssr51163 5 66019422 to 66019434 12 - TSS region transcription start site region 51163
Tssr51164 5 66022701 to 66022723 22 - TSS region transcription start site region 51164
Tssr51165 5 66025063 to 66025090 27 - TSS region transcription start site region 51165
D5Ertd700e 5 66025550 to 66025792 242 DNA segment DNA segment, Chr 5, ERATO Doi 700, expressed
Cpgi15904 5 66026115 to 66027270 1155 CpG island CpG island 15904
D5Mit258 5 66042304 to 66042428 124 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 258
Tssr51166 5 66042641 to 66042645 4 - TSS region transcription start site region 51166
Tssr51167 5 66048519 to 66048523 4 - TSS region transcription start site region 51167
Tssr51168 5 66050357 to 66050369 12 - TSS region transcription start site region 51168
Tssr51169 5 66052753 to 66052775 22 - TSS region transcription start site region 51169
Tssr46522 5 66053125 to 66053136 11 + TSS region transcription start site region 46522
Tssr46523 5 66053138 to 66053149 11 + TSS region transcription start site region 46523
Tssr51170 5 66054499 to 66054561 62 - TSS region transcription start site region 51170
Gm43775 5 66069501 to 66072895 3394 - unclassified gene predicted gene 43775
Cpgi15905 5 66069581 to 66069954 373 CpG island CpG island 15905
Tssr1497 5 66069967 to 66069984 17 - TSS region transcription start site region 1497
D5Dcr46 5 66075450 to 66075547 97 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 46
Gm43323 5 66080209 to 66084466 4257 - unclassified gene predicted gene 43323
D5Ertd77e 5 66080244 to 66080473 229 DNA segment DNA segment, Chr 5, ERATO Doi 77, expressed
Tssr51171 5 66080971 to 66081009 38 - TSS region transcription start site region 51171
Tssr51172 5 66081803 to 66081816 13 - TSS region transcription start site region 51172
Tssr1498 5 66082304 to 66082311 7 - TSS region transcription start site region 1498
D5Dcr47 5 66083904 to 66084000 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 47
Tssr51173 5 66084696 to 66084700 4 - TSS region transcription start site region 51173
D5Ertd163e 5 66096020 to 66096229 209 DNA segment DNA segment, Chr 5, ERATO Doi 163, expressed
Tssr46524 5 66106214 to 66106232 18 + TSS region transcription start site region 46524
Tssr51174 5 66122647 to 66122658 11 - TSS region transcription start site region 51174
Tssr51175 5 66131968 to 66131999 31 - TSS region transcription start site region 51175
Tssr51176 5 66132132 to 66132157 25 - TSS region transcription start site region 51176
Tssr51177 5 66133711 to 66133745 34 - TSS region transcription start site region 51177
Tssr51178 5 66136078 to 66136091 13 - TSS region transcription start site region 51178
Tssr51179 5 66142456 to 66142463 7 - TSS region transcription start site region 51179
Tssr51180 5 66142943 to 66142965 22 - TSS region transcription start site region 51180
Tssr51181 5 66145745 to 66145746 1 - TSS region transcription start site region 51181
Tssr51182 5 66146803 to 66146814 11 - TSS region transcription start site region 51182
Tssr51183 5 66147562 to 66147584 22 - TSS region transcription start site region 51183
Cpgi15906 5 66150669 to 66151686 1017 CpG island CpG island 15906
Tssr51184 5 66150672 to 66150707 35 - TSS region transcription start site region 51184
Tssr46525 5 66150785 to 66150810 25 + TSS region transcription start site region 46525
Tssr51185 5 66150906 to 66150960 54 - TSS region transcription start site region 51185
Tssr51186 5 66151188 to 66151197 9 - TSS region transcription start site region 51186
Gm26725 5 66151212 to 66174945 23733 + antisense lncRNA gene predicted gene, 26725
Tssr51187 5 66151305 to 66151308 3 - TSS region transcription start site region 51187
Tssr51188 5 66151332 to 66151343 11 - TSS region transcription start site region 51188
Tssr51189 5 66151362 to 66151375 13 - TSS region transcription start site region 51189
Tssr51190 5 66151391 to 66151400 9 - TSS region transcription start site region 51190
Tssr51191 5 66151530 to 66151541 11 - TSS region transcription start site region 51191
Tssr51192 5 66151648 to 66151681 33 - TSS region transcription start site region 51192
Tssr51193 5 66151684 to 66151695 11 - TSS region transcription start site region 51193
Tssr51194 5 66151719 to 66151728 9 - TSS region transcription start site region 51194
Tssr51195 5 66151857 to 66151866 9 - TSS region transcription start site region 51195
Tssr51196 5 66151903 to 66151962 59 - TSS region transcription start site region 51196
Gm22929 5 66164556 to 66164662 106 - snRNA gene predicted gene, 22929
1700126H18Rik 5 66166607 to 66191335 24728 - antisense lncRNA gene RIKEN cDNA 1700126H18 gene
Gm40311 5 66171692 to 66172207 515 - lncRNA gene predicted gene, 40311
Tssr51197 5 66173051 to 66173058 7 - TSS region transcription start site region 51197
Gm43772 5 66174965 to 66175343 378 - pseudogene predicted gene 43772
Tssr46526 5 66195577 to 66195585 8 + TSS region transcription start site region 46526
Tssr46527 5 66195599 to 66195608 9 + TSS region transcription start site region 46527
Gm15794 5 66197878 to 66198911 1033 - pseudogene predicted gene 15794
Tssr51198 5 66214544 to 66214545 1 - TSS region transcription start site region 51198
Gm3822 5 66214747 to 66217681 2934 + protein coding gene predicted gene 3822
Tssr46528 5 66215759 to 66215807 48 + TSS region transcription start site region 46528
D5Dcr67 5 66221079 to 66221174 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 67
Cpgi15907 5 66223035 to 66223417 382 CpG island CpG island 15907
D5Dcr68 5 66246456 to 66246551 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 68
Cpgi15908 5 66259812 to 66260399 587 CpG island CpG island 15908
Tssr46529 5 66259863 to 66259887 24 + TSS region transcription start site region 46529
Tssr46530 5 66259890 to 66259904 14 + TSS region transcription start site region 46530
Nsun7 5 66259897 to 66298026 38129 + protein coding gene NOL1/NOP2/Sun domain family, member 7
Tssr46531 5 66260116 to 66260120 4 + TSS region transcription start site region 46531
Tssr46532 5 66260121 to 66260170 49 + TSS region transcription start site region 46532
Apbb2 5 66298703 to 66618784 320081 - protein coding gene amyloid beta (A4) precursor protein-binding, family B, member 2
Tssr51199 5 66299331 to 66299342 11 - TSS region transcription start site region 51199
Tssr51200 5 66299367 to 66299382 15 - TSS region transcription start site region 51200
Tssr51201 5 66299400 to 66299419 19 - TSS region transcription start site region 51201
Tssr51202 5 66299924 to 66299932 8 - TSS region transcription start site region 51202
Gm43790 5 66321005 to 66323017 2012 - unclassified gene predicted gene 43790
Tssr51203 5 66323701 to 66323713 12 - TSS region transcription start site region 51203
Tssr51204 5 66323728 to 66323748 20 - TSS region transcription start site region 51204
Gm23183 5 66325740 to 66326062 322 - unclassified non-coding RNA gene predicted gene, 23183
Tssr51205 5 66333434 to 66333437 3 - TSS region transcription start site region 51205
Cpgi15909 5 66337312 to 66337824 512 CpG island CpG island 15909
Tssr51206 5 66337625 to 66337646 21 - TSS region transcription start site region 51206
Tssr51207 5 66337647 to 66337677 30 - TSS region transcription start site region 51207
Gm43793 5 66345893 to 66347225 1332 - unclassified gene predicted gene 43793
Gm16273 5 66356918 to 66357185 267 + pseudogene predicted gene 16273
Tssr51208 5 66416859 to 66416865 6 - TSS region transcription start site region 51208
Gm43792 5 66429917 to 66432126 2209 - unclassified gene predicted gene 43792