Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:65482777-65823163

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm43552 5 65427427 to 65492833 65406 - protein coding gene predicted gene 43552
Smim14 5 65446844 to 65537184 90340 - protein coding gene small integral membrane protein 14
Tssr51117 5 65484038 to 65484076 38 - TSS region transcription start site region 51117
Tssr51118 5 65486089 to 65486096 7 - TSS region transcription start site region 51118
Cpgi15899 5 65492063 to 65493381 1318 CpG island CpG island 15899
Tssr51119 5 65492399 to 65492435 36 - TSS region transcription start site region 51119
Tssr51120 5 65492790 to 65492868 78 - TSS region transcription start site region 51120
Tssr51121 5 65492874 to 65492889 15 - TSS region transcription start site region 51121
Tssr51122 5 65492900 to 65492921 21 - TSS region transcription start site region 51122
Tssr51123 5 65492925 to 65492970 45 - TSS region transcription start site region 51123
Tssr51124 5 65492984 to 65492991 7 - TSS region transcription start site region 51124
4930589O11Rik 5 65493096 to 65494015 919 + unclassified gene RIKEN cDNA 4930589O11 gene
Tssr46465 5 65493436 to 65493468 32 + TSS region transcription start site region 46465
Gm42725 5 65531568 to 65535760 4192 - unclassified gene predicted gene 42725
Cpgi15900 5 65536697 to 65538022 1325 CpG island CpG island 15900
Tssr46466 5 65536841 to 65536846 5 + TSS region transcription start site region 46466
Tssr46467 5 65536852 to 65536872 20 + TSS region transcription start site region 46467
Tssr46468 5 65536881 to 65536900 19 + TSS region transcription start site region 46468
Tssr46469 5 65536904 to 65536931 27 + TSS region transcription start site region 46469
Tssr51125 5 65537139 to 65537173 34 - TSS region transcription start site region 51125
Tssr46470 5 65537209 to 65537214 5 + TSS region transcription start site region 46470
Ube2k 5 65537233 to 65598988 61755 + protein coding gene ubiquitin-conjugating enzyme E2K
Tssr46471 5 65537255 to 65537266 11 + TSS region transcription start site region 46471
Tssr46472 5 65537267 to 65537331 64 + TSS region transcription start site region 46472
Tssr46473 5 65537344 to 65537357 13 + TSS region transcription start site region 46473
Tssr46474 5 65539519 to 65539536 17 + TSS region transcription start site region 46474
Tssr46475 5 65540048 to 65540071 23 + TSS region transcription start site region 46475
Gm40309 5 65541929 to 65543680 1751 + lncRNA gene predicted gene, 40309
Tssr46476 5 65541951 to 65541955 4 + TSS region transcription start site region 46476
Tssr46477 5 65579004 to 65579021 17 + TSS region transcription start site region 46477
Tssr46478 5 65584779 to 65584791 12 + TSS region transcription start site region 46478
Gm42726 5 65587716 to 65591440 3724 - antisense lncRNA gene predicted gene 42726
B230308N11Rik 5 65605722 to 65611883 6161 unclassified non-coding RNA gene RIKEN cDNA B230308N11 gene
Pds5a 5 65607777 to 65698163 90386 - protein coding gene PDS5 cohesin associated factor A
Gm42727 5 65616949 to 65619771 2822 + unclassified gene predicted gene 42727
Tssr51126 5 65619767 to 65619771 4 - TSS region transcription start site region 51126
Gm42729 5 65623934 to 65626863 2929 + unclassified gene predicted gene 42729
Gm24399 5 65660806 to 65660879 73 + snRNA gene predicted gene, 24399
Gm42728 5 65672609 to 65674160 1551 - unclassified gene predicted gene 42728
Tssr51127 5 65679871 to 65679875 4 - TSS region transcription start site region 51127
C030017G13Rik 5 65680014 to 65682344 2330 - unclassified gene RIKEN cDNA C030017G13 gene
Tssr51128 5 65693253 to 65693257 4 - TSS region transcription start site region 51128
Cpgi15901 5 65696677 to 65698730 2053 CpG island CpG island 15901
Tssr51129 5 65697833 to 65697848 15 - TSS region transcription start site region 51129
Tssr51130 5 65697896 to 65697963 67 - TSS region transcription start site region 51130
Tssr51131 5 65697967 to 65697990 23 - TSS region transcription start site region 51131
Tssr51132 5 65698171 to 65698253 82 - TSS region transcription start site region 51132
Gm46945 5 65745452 to 65757011 11559 - lncRNA gene predicted gene, 46945
Tssr51133 5 65752141 to 65752186 45 - TSS region transcription start site region 51133
N4bp2os 5 65760991 to 65764379 3388 - unclassified non-coding RNA gene NEDD4 binding protein 2, opposite strand
Cpgi15902 5 65763150 to 65765140 1990 CpG island CpG island 15902
Tssr46479 5 65763310 to 65763349 39 + TSS region transcription start site region 46479
Tssr46480 5 65763518 to 65763541 23 + TSS region transcription start site region 46480
N4bp2 5 65763521 to 65830108 66587 + protein coding gene NEDD4 binding protein 2
Tssr46481 5 65763547 to 65763570 23 + TSS region transcription start site region 46481
Tssr46482 5 65763764 to 65763776 12 + TSS region transcription start site region 46482
Tssr51134 5 65763962 to 65763976 14 - TSS region transcription start site region 51134
Tssr46483 5 65763990 to 65764001 11 + TSS region transcription start site region 46483
Tssr46484 5 65764012 to 65764035 23 + TSS region transcription start site region 46484
Tssr46485 5 65764036 to 65764060 24 + TSS region transcription start site region 46485
Tssr46486 5 65764073 to 65764158 85 + TSS region transcription start site region 46486
Tssr51135 5 65764350 to 65764405 55 - TSS region transcription start site region 51135
Tssr51136 5 65764411 to 65764422 11 - TSS region transcription start site region 51136
Tssr51137 5 65765032 to 65765050 18 - TSS region transcription start site region 51137
Tssr46487 5 65767410 to 65767414 4 + TSS region transcription start site region 46487
Gm24346 5 65777014 to 65777207 193 + snoRNA gene predicted gene, 24346
Gm42648 5 65778014 to 65780518 2504 + unclassified gene predicted gene 42648
Tssr46488 5 65781412 to 65781443 31 + TSS region transcription start site region 46488
Tssr46489 5 65791111 to 65791124 13 + TSS region transcription start site region 46489