Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:65304871-66054875

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208 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rfc1 5 65261850 to 65335670 73820 - protein coding gene replication factor C (activator 1) 1
Gm43628 5 65307808 to 65308994 1186 - unclassified gene predicted gene 43628
D5Ertd301e 5 65307829 to 65308068 239 DNA segment DNA segment, Chr 5, ERATO Doi 301, expressed
Tssr51091 5 65327641 to 65327644 3 - TSS region transcription start site region 51091
Tssr51092 5 65330139 to 65330148 9 - TSS region transcription start site region 51092
Cpgi15895 5 65335128 to 65335989 861 CpG island CpG island 15895
Tssr51093 5 65335581 to 65335592 11 - TSS region transcription start site region 51093
Tssr51094 5 65335597 to 65335679 82 - TSS region transcription start site region 51094
Tssr46456 5 65348328 to 65348346 18 + TSS region transcription start site region 46456
Tssr46457 5 65348386 to 65348406 20 + TSS region transcription start site region 46457
Klb 5 65348411 to 65384020 35609 + protein coding gene klotho beta
Tssr46458 5 65348475 to 65348502 27 + TSS region transcription start site region 46458
Cpgi15896 5 65379437 to 65379977 540 CpG island CpG island 15896
Tssr46459 5 65386455 to 65386457 2 + TSS region transcription start site region 46459
Rpl9 5 65388364 to 65391431 3067 - protein coding gene ribosomal protein L9
Cpgi15897 5 65390535 to 65391745 1210 CpG island CpG island 15897
Tssr51095 5 65391385 to 65391405 20 - TSS region transcription start site region 51095
Tssr51096 5 65391408 to 65391451 43 - TSS region transcription start site region 51096
Lias 5 65391497 to 65410423 18926 + protein coding gene lipoic acid synthetase
Tssr46460 5 65391523 to 65391565 42 + TSS region transcription start site region 46460
Tssr46461 5 65391577 to 65391588 11 + TSS region transcription start site region 46461
Tssr46462 5 65391593 to 65391594 1 + TSS region transcription start site region 46462
Tssr46463 5 65392642 to 65392647 5 + TSS region transcription start site region 46463
1110003F10Rik 5 65405751 to 65406517 766 + unclassified gene RIKEN cDNA 1110003F10 gene
Gm43311 5 65410651 to 65413027 2376 - unclassified gene predicted gene 43311
Ugdh 5 65413207 to 65435842 22635 - protein coding gene UDP-glucose dehydrogenase
Tssr51097 5 65419133 to 65419162 29 - TSS region transcription start site region 51097
Tssr51098 5 65421581 to 65421590 9 - TSS region transcription start site region 51098
Tssr51099 5 65422884 to 65422895 11 - TSS region transcription start site region 51099
Tssr51100 5 65422907 to 65422918 11 - TSS region transcription start site region 51100
D5Mit15 5 65422974 to 65423122 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 15
Tssr46464 5 65423587 to 65423621 34 + TSS region transcription start site region 46464
Tssr51101 5 65424328 to 65424339 11 - TSS region transcription start site region 51101
Gm43552 5 65427427 to 65492833 65406 - protein coding gene predicted gene 43552
Tssr51102 5 65427523 to 65427552 29 - TSS region transcription start site region 51102
Tssr51103 5 65428354 to 65428365 11 - TSS region transcription start site region 51103
Tssr51104 5 65428398 to 65428405 7 - TSS region transcription start site region 51104
Gm43289 5 65430106 to 65431580 1474 - unclassified gene predicted gene 43289
Tssr51105 5 65434885 to 65434889 4 - TSS region transcription start site region 51105
Cpgi15898 5 65435231 to 65436410 1179 CpG island CpG island 15898
Tssr51106 5 65435655 to 65435695 40 - TSS region transcription start site region 51106
Tssr51107 5 65435717 to 65435734 17 - TSS region transcription start site region 51107
Tssr51108 5 65435759 to 65435766 7 - TSS region transcription start site region 51108
Tssr51109 5 65435806 to 65435829 23 - TSS region transcription start site region 51109
Tssr51110 5 65435881 to 65435929 48 - TSS region transcription start site region 51110
Tssr51111 5 65436424 to 65436462 38 - TSS region transcription start site region 51111
Smim14 5 65446844 to 65537184 90340 - protein coding gene small integral membrane protein 14
Tssr51112 5 65453393 to 65453404 11 - TSS region transcription start site region 51112
Tssr51113 5 65454718 to 65454735 17 - TSS region transcription start site region 51113
Tssr51114 5 65454748 to 65454764 16 - TSS region transcription start site region 51114
Gm43290 5 65476505 to 65478061 1556 - unclassified gene predicted gene 43290
Tssr51115 5 65479816 to 65479844 28 - TSS region transcription start site region 51115
Tssr51116 5 65479871 to 65479881 10 - TSS region transcription start site region 51116
Tssr51117 5 65484038 to 65484076 38 - TSS region transcription start site region 51117
Tssr51118 5 65486089 to 65486096 7 - TSS region transcription start site region 51118
Cpgi15899 5 65492063 to 65493381 1318 CpG island CpG island 15899
Tssr51119 5 65492399 to 65492435 36 - TSS region transcription start site region 51119
Tssr51120 5 65492790 to 65492868 78 - TSS region transcription start site region 51120
Tssr51121 5 65492874 to 65492889 15 - TSS region transcription start site region 51121
Tssr51122 5 65492900 to 65492921 21 - TSS region transcription start site region 51122
Tssr51123 5 65492925 to 65492970 45 - TSS region transcription start site region 51123
Tssr51124 5 65492984 to 65492991 7 - TSS region transcription start site region 51124
4930589O11Rik 5 65493096 to 65494015 919 + unclassified gene RIKEN cDNA 4930589O11 gene
Tssr46465 5 65493436 to 65493468 32 + TSS region transcription start site region 46465
Gm42725 5 65531568 to 65535760 4192 - unclassified gene predicted gene 42725
Cpgi15900 5 65536697 to 65538022 1325 CpG island CpG island 15900
Tssr46466 5 65536841 to 65536846 5 + TSS region transcription start site region 46466
Tssr46467 5 65536852 to 65536872 20 + TSS region transcription start site region 46467
Tssr46468 5 65536881 to 65536900 19 + TSS region transcription start site region 46468
Tssr46469 5 65536904 to 65536931 27 + TSS region transcription start site region 46469
Tssr51125 5 65537139 to 65537173 34 - TSS region transcription start site region 51125
Tssr46470 5 65537209 to 65537214 5 + TSS region transcription start site region 46470
Ube2k 5 65537233 to 65598988 61755 + protein coding gene ubiquitin-conjugating enzyme E2K
Tssr46471 5 65537255 to 65537266 11 + TSS region transcription start site region 46471
Tssr46472 5 65537267 to 65537331 64 + TSS region transcription start site region 46472
Tssr46473 5 65537344 to 65537357 13 + TSS region transcription start site region 46473
Tssr46474 5 65539519 to 65539536 17 + TSS region transcription start site region 46474
Tssr46475 5 65540048 to 65540071 23 + TSS region transcription start site region 46475
Gm40309 5 65541929 to 65543680 1751 + lncRNA gene predicted gene, 40309
Tssr46476 5 65541951 to 65541955 4 + TSS region transcription start site region 46476
Tssr46477 5 65579004 to 65579021 17 + TSS region transcription start site region 46477
Tssr46478 5 65584779 to 65584791 12 + TSS region transcription start site region 46478
Gm42726 5 65587716 to 65591440 3724 - antisense lncRNA gene predicted gene 42726
B230308N11Rik 5 65605722 to 65611883 6161 unclassified non-coding RNA gene RIKEN cDNA B230308N11 gene
Pds5a 5 65607777 to 65698163 90386 - protein coding gene PDS5 cohesin associated factor A
Gm42727 5 65616949 to 65619771 2822 + unclassified gene predicted gene 42727
Tssr51126 5 65619767 to 65619771 4 - TSS region transcription start site region 51126
Gm42729 5 65623934 to 65626863 2929 + unclassified gene predicted gene 42729
Gm24399 5 65660806 to 65660879 73 + snRNA gene predicted gene, 24399
Gm42728 5 65672609 to 65674160 1551 - unclassified gene predicted gene 42728
Tssr51127 5 65679871 to 65679875 4 - TSS region transcription start site region 51127
C030017G13Rik 5 65680014 to 65682344 2330 - unclassified gene RIKEN cDNA C030017G13 gene
Tssr51128 5 65693253 to 65693257 4 - TSS region transcription start site region 51128
Cpgi15901 5 65696677 to 65698730 2053 CpG island CpG island 15901
Tssr51129 5 65697833 to 65697848 15 - TSS region transcription start site region 51129
Tssr51130 5 65697896 to 65697963 67 - TSS region transcription start site region 51130
Tssr51131 5 65697967 to 65697990 23 - TSS region transcription start site region 51131
Tssr51132 5 65698171 to 65698253 82 - TSS region transcription start site region 51132
Gm46945 5 65745452 to 65757011 11559 - lncRNA gene predicted gene, 46945
Tssr51133 5 65752141 to 65752186 45 - TSS region transcription start site region 51133
N4bp2os 5 65760991 to 65764379 3388 - unclassified non-coding RNA gene NEDD4 binding protein 2, opposite strand
Cpgi15902 5 65763150 to 65765140 1990 CpG island CpG island 15902
Tssr46479 5 65763310 to 65763349 39 + TSS region transcription start site region 46479
Tssr46480 5 65763518 to 65763541 23 + TSS region transcription start site region 46480
N4bp2 5 65763521 to 65830108 66587 + protein coding gene NEDD4 binding protein 2
Tssr46481 5 65763547 to 65763570 23 + TSS region transcription start site region 46481
Tssr46482 5 65763764 to 65763776 12 + TSS region transcription start site region 46482
Tssr51134 5 65763962 to 65763976 14 - TSS region transcription start site region 51134
Tssr46483 5 65763990 to 65764001 11 + TSS region transcription start site region 46483
Tssr46484 5 65764012 to 65764035 23 + TSS region transcription start site region 46484
Tssr46485 5 65764036 to 65764060 24 + TSS region transcription start site region 46485
Tssr46486 5 65764073 to 65764158 85 + TSS region transcription start site region 46486
Tssr51135 5 65764350 to 65764405 55 - TSS region transcription start site region 51135
Tssr51136 5 65764411 to 65764422 11 - TSS region transcription start site region 51136
Tssr51137 5 65765032 to 65765050 18 - TSS region transcription start site region 51137
Tssr46487 5 65767410 to 65767414 4 + TSS region transcription start site region 46487
Gm24346 5 65777014 to 65777207 193 + snoRNA gene predicted gene, 24346
Gm42648 5 65778014 to 65780518 2504 + unclassified gene predicted gene 42648
Tssr46488 5 65781412 to 65781443 31 + TSS region transcription start site region 46488
Tssr46489 5 65791111 to 65791124 13 + TSS region transcription start site region 46489
Gm3521 5 65837294 to 65858307 21013 - lncRNA gene predicted gene 3521
Tssr46490 5 65851058 to 65851070 12 + TSS region transcription start site region 46490
Tssr46491 5 65851135 to 65851146 11 + TSS region transcription start site region 46491
Gm42645 5 65853332 to 65854958 1626 + unclassified gene predicted gene 42645
Gm42646 5 65857318 to 65858231 913 + unclassified gene predicted gene 42646
Tssr51138 5 65858088 to 65858124 36 - TSS region transcription start site region 51138
Tssr51139 5 65858132 to 65858141 9 - TSS region transcription start site region 51139
Tssr51140 5 65858144 to 65858161 17 - TSS region transcription start site region 51140
Tssr46492 5 65858159 to 65858174 15 + TSS region transcription start site region 46492
Tssr46493 5 65858176 to 65858183 7 + TSS region transcription start site region 46493
Tssr51141 5 65858186 to 65858214 28 - TSS region transcription start site region 51141
Tssr51142 5 65858218 to 65858240 22 - TSS region transcription start site region 51142
Tssr51143 5 65858254 to 65858261 7 - TSS region transcription start site region 51143
Gm43004 5 65859317 to 65860019 702 + unclassified gene predicted gene 43004
Tssr1495 5 65860747 to 65860759 12 + TSS region transcription start site region 1495
Tssr46494 5 65860938 to 65860976 38 + TSS region transcription start site region 46494
Tssr46495 5 65861135 to 65861149 14 + TSS region transcription start site region 46495
Tssr46496 5 65861161 to 65861172 11 + TSS region transcription start site region 46496
Tssr46497 5 65861212 to 65861237 25 + TSS region transcription start site region 46497
Tssr46498 5 65861261 to 65861318 57 + TSS region transcription start site region 46498
Tssr46499 5 65861358 to 65861368 10 + TSS region transcription start site region 46499
Rhoh 5 65861403 to 65896700 35297 + protein coding gene ras homolog family member H
Tssr46500 5 65862650 to 65862653 3 + TSS region transcription start site region 46500
Tssr46501 5 65863268 to 65863294 26 + TSS region transcription start site region 46501
Tssr46502 5 65863563 to 65863650 87 + TSS region transcription start site region 46502
Tssr46503 5 65863653 to 65863656 3 + TSS region transcription start site region 46503
Tssr46504 5 65863775 to 65863795 20 + TSS region transcription start site region 46504
Tssr46505 5 65868256 to 65868270 14 + TSS region transcription start site region 46505
Tssr46506 5 65885733 to 65885737 4 + TSS region transcription start site region 46506
Tssr51144 5 65910520 to 65910544 24 - TSS region transcription start site region 51144
Tssr46507 5 65910660 to 65910677 17 + TSS region transcription start site region 46507
Gm32474 5 65911127 to 65913845 2718 - lncRNA gene predicted gene, 32474
Gm43769 5 65911624 to 65915946 4322 + unclassified gene predicted gene 43769
Tssr51145 5 65911853 to 65911862 9 - TSS region transcription start site region 51145
Tssr51146 5 65912324 to 65912349 25 - TSS region transcription start site region 51146
Tssr51147 5 65912368 to 65912392 24 - TSS region transcription start site region 51147
Gm32556 5 65914033 to 65919746 5713 - lncRNA gene predicted gene, 32556
Tssr51148 5 65918199 to 65918204 5 - TSS region transcription start site region 51148
Tssr51149 5 65926823 to 65926826 3 - TSS region transcription start site region 51149
Tssr51150 5 65929245 to 65929258 13 - TSS region transcription start site region 51150
Tssr1496 5 65934712 to 65934717 5 + TSS region transcription start site region 1496
Tssr46508 5 65934894 to 65934902 8 + TSS region transcription start site region 46508
Tssr46509 5 65934910 to 65934921 11 + TSS region transcription start site region 46509
Chrna9 5 65934921 to 65977326 42405 + protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 9
Tssr46510 5 65934922 to 65935006 84 + TSS region transcription start site region 46510
Tssr51151 5 65935657 to 65935660 3 - TSS region transcription start site region 51151
4930480C01Rik 5 65951305 to 65952205 900 + lncRNA gene RIKEN cDNA 4930480C01 gene
Tssr46511 5 65955637 to 65955646 9 + TSS region transcription start site region 46511
Tssr46512 5 65955653 to 65955664 11 + TSS region transcription start site region 46512
Tssr46513 5 65955673 to 65955680 7 + TSS region transcription start site region 46513
Tssr46514 5 65955697 to 65955704 7 + TSS region transcription start site region 46514
Gm43771 5 65963851 to 65965428 1577 + unclassified gene predicted gene 43771
Tssr46515 5 65966948 to 65966952 4 + TSS region transcription start site region 46515
Tssr46516 5 65967346 to 65967381 35 + TSS region transcription start site region 46516
Tssr46517 5 65967384 to 65967401 17 + TSS region transcription start site region 46517
Tssr51152 5 65975648 to 65975688 40 - TSS region transcription start site region 51152
Tssr46518 5 65975850 to 65975866 16 + TSS region transcription start site region 46518
Tssr46519 5 65975882 to 65975893 11 + TSS region transcription start site region 46519
Tssr46520 5 65975978 to 65975989 11 + TSS region transcription start site region 46520
9130230L23Rik 5 65987928 to 66004285 16357 - protein coding gene RIKEN cDNA 9130230L23 gene
Gm25952 5 65989045 to 65989118 73 + miRNA gene predicted gene, 25952
Tssr51153 5 65990157 to 65990182 25 - TSS region transcription start site region 51153
Tssr51154 5 65991234 to 65991246 12 - TSS region transcription start site region 51154
Tssr46521 5 65991491 to 65991511 20 + TSS region transcription start site region 46521
Tssr51155 5 66001327 to 66001347 20 - TSS region transcription start site region 51155
Tssr51156 5 66001356 to 66001390 34 - TSS region transcription start site region 51156
Tssr51157 5 66003601 to 66003605 4 - TSS region transcription start site region 51157
Tssr51158 5 66004278 to 66004291 13 - TSS region transcription start site region 51158
Gm40310 5 66008325 to 66010377 2052 - lncRNA gene predicted gene, 40310
Rbm47 5 66016549 to 66151954 135405 - protein coding gene RNA binding motif protein 47
Tssr51159 5 66017618 to 66017622 4 - TSS region transcription start site region 51159
Tssr51160 5 66018560 to 66018575 15 - TSS region transcription start site region 51160
Tssr51161 5 66019005 to 66019009 4 - TSS region transcription start site region 51161
Cpgi15903 5 66019170 to 66019462 292 CpG island CpG island 15903
Tssr51162 5 66019266 to 66019293 27 - TSS region transcription start site region 51162
Tssr51163 5 66019422 to 66019434 12 - TSS region transcription start site region 51163
Tssr51164 5 66022701 to 66022723 22 - TSS region transcription start site region 51164
Tssr51165 5 66025063 to 66025090 27 - TSS region transcription start site region 51165
D5Ertd700e 5 66025550 to 66025792 242 DNA segment DNA segment, Chr 5, ERATO Doi 700, expressed
Cpgi15904 5 66026115 to 66027270 1155 CpG island CpG island 15904