Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:65253364-65526431

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wdr19 5 65199696 to 65260415 60719 + protein coding gene WD repeat domain 19
Rfc1 5 65261850 to 65335670 73820 - protein coding gene replication factor C (activator 1) 1
Gm43628 5 65307808 to 65308994 1186 - unclassified gene predicted gene 43628
D5Ertd301e 5 65307829 to 65308068 239 DNA segment DNA segment, Chr 5, ERATO Doi 301, expressed
Tssr51091 5 65327641 to 65327644 3 - TSS region transcription start site region 51091
Tssr51092 5 65330139 to 65330148 9 - TSS region transcription start site region 51092
Cpgi15895 5 65335128 to 65335989 861 CpG island CpG island 15895
Tssr51093 5 65335581 to 65335592 11 - TSS region transcription start site region 51093
Tssr51094 5 65335597 to 65335679 82 - TSS region transcription start site region 51094
Tssr46456 5 65348328 to 65348346 18 + TSS region transcription start site region 46456
Tssr46457 5 65348386 to 65348406 20 + TSS region transcription start site region 46457
Klb 5 65348411 to 65384020 35609 + protein coding gene klotho beta
Tssr46458 5 65348475 to 65348502 27 + TSS region transcription start site region 46458
Cpgi15896 5 65379437 to 65379977 540 CpG island CpG island 15896
Tssr46459 5 65386455 to 65386457 2 + TSS region transcription start site region 46459
Rpl9 5 65388364 to 65391431 3067 - protein coding gene ribosomal protein L9
Cpgi15897 5 65390535 to 65391745 1210 CpG island CpG island 15897
Tssr51095 5 65391385 to 65391405 20 - TSS region transcription start site region 51095
Tssr51096 5 65391408 to 65391451 43 - TSS region transcription start site region 51096
Lias 5 65391497 to 65410423 18926 + protein coding gene lipoic acid synthetase
Tssr46460 5 65391523 to 65391565 42 + TSS region transcription start site region 46460
Tssr46461 5 65391577 to 65391588 11 + TSS region transcription start site region 46461
Tssr46462 5 65391593 to 65391594 1 + TSS region transcription start site region 46462
Tssr46463 5 65392642 to 65392647 5 + TSS region transcription start site region 46463
1110003F10Rik 5 65405751 to 65406517 766 + unclassified gene RIKEN cDNA 1110003F10 gene
Gm43311 5 65410651 to 65413027 2376 - unclassified gene predicted gene 43311
Ugdh 5 65413207 to 65435842 22635 - protein coding gene UDP-glucose dehydrogenase
Tssr51097 5 65419133 to 65419162 29 - TSS region transcription start site region 51097
Tssr51098 5 65421581 to 65421590 9 - TSS region transcription start site region 51098
Tssr51099 5 65422884 to 65422895 11 - TSS region transcription start site region 51099
Tssr51100 5 65422907 to 65422918 11 - TSS region transcription start site region 51100
D5Mit15 5 65422974 to 65423122 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 15
Tssr46464 5 65423587 to 65423621 34 + TSS region transcription start site region 46464
Tssr51101 5 65424328 to 65424339 11 - TSS region transcription start site region 51101
Gm43552 5 65427427 to 65492833 65406 - protein coding gene predicted gene 43552
Tssr51102 5 65427523 to 65427552 29 - TSS region transcription start site region 51102
Tssr51103 5 65428354 to 65428365 11 - TSS region transcription start site region 51103
Tssr51104 5 65428398 to 65428405 7 - TSS region transcription start site region 51104
Gm43289 5 65430106 to 65431580 1474 - unclassified gene predicted gene 43289
Tssr51105 5 65434885 to 65434889 4 - TSS region transcription start site region 51105
Cpgi15898 5 65435231 to 65436410 1179 CpG island CpG island 15898
Tssr51106 5 65435655 to 65435695 40 - TSS region transcription start site region 51106
Tssr51107 5 65435717 to 65435734 17 - TSS region transcription start site region 51107
Tssr51108 5 65435759 to 65435766 7 - TSS region transcription start site region 51108
Tssr51109 5 65435806 to 65435829 23 - TSS region transcription start site region 51109
Tssr51110 5 65435881 to 65435929 48 - TSS region transcription start site region 51110
Tssr51111 5 65436424 to 65436462 38 - TSS region transcription start site region 51111
Smim14 5 65446844 to 65537184 90340 - protein coding gene small integral membrane protein 14
Tssr51112 5 65453393 to 65453404 11 - TSS region transcription start site region 51112
Tssr51113 5 65454718 to 65454735 17 - TSS region transcription start site region 51113
Tssr51114 5 65454748 to 65454764 16 - TSS region transcription start site region 51114
Gm43290 5 65476505 to 65478061 1556 - unclassified gene predicted gene 43290
Tssr51115 5 65479816 to 65479844 28 - TSS region transcription start site region 51115
Tssr51116 5 65479871 to 65479881 10 - TSS region transcription start site region 51116
Tssr51117 5 65484038 to 65484076 38 - TSS region transcription start site region 51117
Tssr51118 5 65486089 to 65486096 7 - TSS region transcription start site region 51118
Cpgi15899 5 65492063 to 65493381 1318 CpG island CpG island 15899
Tssr51119 5 65492399 to 65492435 36 - TSS region transcription start site region 51119
Tssr51120 5 65492790 to 65492868 78 - TSS region transcription start site region 51120
Tssr51121 5 65492874 to 65492889 15 - TSS region transcription start site region 51121
Tssr51122 5 65492900 to 65492921 21 - TSS region transcription start site region 51122
Tssr51123 5 65492925 to 65492970 45 - TSS region transcription start site region 51123
Tssr51124 5 65492984 to 65492991 7 - TSS region transcription start site region 51124
4930589O11Rik 5 65493096 to 65494015 919 + unclassified gene RIKEN cDNA 4930589O11 gene
Tssr46465 5 65493436 to 65493468 32 + TSS region transcription start site region 46465