Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:65189885-65679889

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15894 5 65199455 to 65200049 594 CpG island CpG island 15894
Tssr46454 5 65199691 to 65199735 44 + TSS region transcription start site region 46454
Wdr19 5 65199696 to 65260415 60719 + protein coding gene WD repeat domain 19
Tssr1494 5 65247322 to 65247329 7 + TSS region transcription start site region 1494
Tssr46455 5 65250797 to 65250808 11 + TSS region transcription start site region 46455
Rfc1 5 65261850 to 65335670 73820 - protein coding gene replication factor C (activator 1) 1
Gm43628 5 65307808 to 65308994 1186 - unclassified gene predicted gene 43628
D5Ertd301e 5 65307829 to 65308068 239 DNA segment DNA segment, Chr 5, ERATO Doi 301, expressed
Tssr51091 5 65327641 to 65327644 3 - TSS region transcription start site region 51091
Tssr51092 5 65330139 to 65330148 9 - TSS region transcription start site region 51092
Cpgi15895 5 65335128 to 65335989 861 CpG island CpG island 15895
Tssr51093 5 65335581 to 65335592 11 - TSS region transcription start site region 51093
Tssr51094 5 65335597 to 65335679 82 - TSS region transcription start site region 51094
Tssr46456 5 65348328 to 65348346 18 + TSS region transcription start site region 46456
Tssr46457 5 65348386 to 65348406 20 + TSS region transcription start site region 46457
Klb 5 65348411 to 65384020 35609 + protein coding gene klotho beta
Tssr46458 5 65348475 to 65348502 27 + TSS region transcription start site region 46458
Cpgi15896 5 65379437 to 65379977 540 CpG island CpG island 15896
Tssr46459 5 65386455 to 65386457 2 + TSS region transcription start site region 46459
Rpl9 5 65388364 to 65391431 3067 - protein coding gene ribosomal protein L9
Cpgi15897 5 65390535 to 65391745 1210 CpG island CpG island 15897
Tssr51095 5 65391385 to 65391405 20 - TSS region transcription start site region 51095
Tssr51096 5 65391408 to 65391451 43 - TSS region transcription start site region 51096
Lias 5 65391497 to 65410423 18926 + protein coding gene lipoic acid synthetase
Tssr46460 5 65391523 to 65391565 42 + TSS region transcription start site region 46460
Tssr46461 5 65391577 to 65391588 11 + TSS region transcription start site region 46461
Tssr46462 5 65391593 to 65391594 1 + TSS region transcription start site region 46462
Tssr46463 5 65392642 to 65392647 5 + TSS region transcription start site region 46463
1110003F10Rik 5 65405751 to 65406517 766 + unclassified gene RIKEN cDNA 1110003F10 gene
Gm43311 5 65410651 to 65413027 2376 - unclassified gene predicted gene 43311
Ugdh 5 65413207 to 65435842 22635 - protein coding gene UDP-glucose dehydrogenase
Tssr51097 5 65419133 to 65419162 29 - TSS region transcription start site region 51097
Tssr51098 5 65421581 to 65421590 9 - TSS region transcription start site region 51098
Tssr51099 5 65422884 to 65422895 11 - TSS region transcription start site region 51099
Tssr51100 5 65422907 to 65422918 11 - TSS region transcription start site region 51100
D5Mit15 5 65422974 to 65423122 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 15
Tssr46464 5 65423587 to 65423621 34 + TSS region transcription start site region 46464
Tssr51101 5 65424328 to 65424339 11 - TSS region transcription start site region 51101
Gm43552 5 65427427 to 65492833 65406 - protein coding gene predicted gene 43552
Tssr51102 5 65427523 to 65427552 29 - TSS region transcription start site region 51102
Tssr51103 5 65428354 to 65428365 11 - TSS region transcription start site region 51103
Tssr51104 5 65428398 to 65428405 7 - TSS region transcription start site region 51104
Gm43289 5 65430106 to 65431580 1474 - unclassified gene predicted gene 43289
Tssr51105 5 65434885 to 65434889 4 - TSS region transcription start site region 51105
Cpgi15898 5 65435231 to 65436410 1179 CpG island CpG island 15898
Tssr51106 5 65435655 to 65435695 40 - TSS region transcription start site region 51106
Tssr51107 5 65435717 to 65435734 17 - TSS region transcription start site region 51107
Tssr51108 5 65435759 to 65435766 7 - TSS region transcription start site region 51108
Tssr51109 5 65435806 to 65435829 23 - TSS region transcription start site region 51109
Tssr51110 5 65435881 to 65435929 48 - TSS region transcription start site region 51110
Tssr51111 5 65436424 to 65436462 38 - TSS region transcription start site region 51111
Smim14 5 65446844 to 65537184 90340 - protein coding gene small integral membrane protein 14
Tssr51112 5 65453393 to 65453404 11 - TSS region transcription start site region 51112
Tssr51113 5 65454718 to 65454735 17 - TSS region transcription start site region 51113
Tssr51114 5 65454748 to 65454764 16 - TSS region transcription start site region 51114
Gm43290 5 65476505 to 65478061 1556 - unclassified gene predicted gene 43290
Tssr51115 5 65479816 to 65479844 28 - TSS region transcription start site region 51115
Tssr51116 5 65479871 to 65479881 10 - TSS region transcription start site region 51116
Tssr51117 5 65484038 to 65484076 38 - TSS region transcription start site region 51117
Tssr51118 5 65486089 to 65486096 7 - TSS region transcription start site region 51118
Cpgi15899 5 65492063 to 65493381 1318 CpG island CpG island 15899
Tssr51119 5 65492399 to 65492435 36 - TSS region transcription start site region 51119
Tssr51120 5 65492790 to 65492868 78 - TSS region transcription start site region 51120
Tssr51121 5 65492874 to 65492889 15 - TSS region transcription start site region 51121
Tssr51122 5 65492900 to 65492921 21 - TSS region transcription start site region 51122
Tssr51123 5 65492925 to 65492970 45 - TSS region transcription start site region 51123
Tssr51124 5 65492984 to 65492991 7 - TSS region transcription start site region 51124
4930589O11Rik 5 65493096 to 65494015 919 + unclassified gene RIKEN cDNA 4930589O11 gene
Tssr46465 5 65493436 to 65493468 32 + TSS region transcription start site region 46465
Gm42725 5 65531568 to 65535760 4192 - unclassified gene predicted gene 42725
Cpgi15900 5 65536697 to 65538022 1325 CpG island CpG island 15900
Tssr46466 5 65536841 to 65536846 5 + TSS region transcription start site region 46466
Tssr46467 5 65536852 to 65536872 20 + TSS region transcription start site region 46467
Tssr46468 5 65536881 to 65536900 19 + TSS region transcription start site region 46468
Tssr46469 5 65536904 to 65536931 27 + TSS region transcription start site region 46469
Tssr51125 5 65537139 to 65537173 34 - TSS region transcription start site region 51125
Tssr46470 5 65537209 to 65537214 5 + TSS region transcription start site region 46470
Ube2k 5 65537233 to 65598988 61755 + protein coding gene ubiquitin-conjugating enzyme E2K
Tssr46471 5 65537255 to 65537266 11 + TSS region transcription start site region 46471
Tssr46472 5 65537267 to 65537331 64 + TSS region transcription start site region 46472
Tssr46473 5 65537344 to 65537357 13 + TSS region transcription start site region 46473
Tssr46474 5 65539519 to 65539536 17 + TSS region transcription start site region 46474
Tssr46475 5 65540048 to 65540071 23 + TSS region transcription start site region 46475
Gm40309 5 65541929 to 65543680 1751 + lncRNA gene predicted gene, 40309
Tssr46476 5 65541951 to 65541955 4 + TSS region transcription start site region 46476
Tssr46477 5 65579004 to 65579021 17 + TSS region transcription start site region 46477
Tssr46478 5 65584779 to 65584791 12 + TSS region transcription start site region 46478
Gm42726 5 65587716 to 65591440 3724 - antisense lncRNA gene predicted gene 42726
B230308N11Rik 5 65605722 to 65611883 6161 unclassified non-coding RNA gene RIKEN cDNA B230308N11 gene
Pds5a 5 65607777 to 65698163 90386 - protein coding gene PDS5 cohesin associated factor A
Gm42727 5 65616949 to 65619771 2822 + unclassified gene predicted gene 42727
Tssr51126 5 65619767 to 65619771 4 - TSS region transcription start site region 51126
Gm42729 5 65623934 to 65626863 2929 + unclassified gene predicted gene 42729
Gm24399 5 65660806 to 65660879 73 + snRNA gene predicted gene, 24399
Gm42728 5 65672609 to 65674160 1551 - unclassified gene predicted gene 42728
Tssr51127 5 65679871 to 65679875 4 - TSS region transcription start site region 51127