Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:64815664-65535930

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147 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Klf3 5 64803523 to 64832903 29380 + protein coding gene Kruppel-like factor 3 (basic)
Gm31684 5 64816838 to 64819750 2912 + lncRNA gene predicted gene, 31684
Tssr46420 5 64820955 to 64820959 4 + TSS region transcription start site region 46420
Tssr46421 5 64821915 to 64821930 15 + TSS region transcription start site region 46421
Tssr46422 5 64822078 to 64822108 30 + TSS region transcription start site region 46422
Tssr46423 5 64822117 to 64822173 56 + TSS region transcription start site region 46423
Tssr46424 5 64822220 to 64822246 26 + TSS region transcription start site region 46424
Tssr46425 5 64822984 to 64823010 26 + TSS region transcription start site region 46425
Cpgi15889 5 64826596 to 64826757 161 CpG island CpG island 15889
Tssr46426 5 64829879 to 64829900 21 + TSS region transcription start site region 46426
Tssr46427 5 64830018 to 64830045 27 + TSS region transcription start site region 46427
Tssr46428 5 64830464 to 64830468 4 + TSS region transcription start site region 46428
Tssr1489 5 64864766 to 64864788 22 - TSS region transcription start site region 1489
Tssr51071 5 64865454 to 64865504 50 - TSS region transcription start site region 51071
Tssr51072 5 64865545 to 64865560 15 - TSS region transcription start site region 51072
Gm31889 5 64879545 to 64888266 8721 + lncRNA gene predicted gene, 31889
Gm21011 5 64896930 to 64898539 1609 - pseudogene predicted gene, 21011
Tssr51073 5 64899019 to 64899032 13 - TSS region transcription start site region 51073
Tssr46429 5 64899055 to 64899066 11 + TSS region transcription start site region 46429
Tssr46430 5 64899113 to 64899139 26 + TSS region transcription start site region 46430
Tssr46431 5 64906281 to 64906310 29 + TSS region transcription start site region 46431
Tssr46432 5 64909285 to 64909332 47 + TSS region transcription start site region 46432
Tssr46433 5 64910222 to 64910233 11 + TSS region transcription start site region 46433
Tssr46434 5 64910286 to 64910311 25 + TSS region transcription start site region 46434
Tssr46435 5 64917699 to 64917702 3 + TSS region transcription start site region 46435
Tssr46436 5 64924185 to 64924199 14 + TSS region transcription start site region 46436
Tlr1 5 64924679 to 64933563 8884 - protein coding gene toll-like receptor 1
Tssr51074 5 64932891 to 64932904 13 - TSS region transcription start site region 51074
Tssr51075 5 64932911 to 64932952 41 - TSS region transcription start site region 51075
Tssr51076 5 64933550 to 64933606 56 - TSS region transcription start site region 51076
Tlr6 5 64952031 to 64960097 8066 - protein coding gene toll-like receptor 6
Tssr51077 5 64959117 to 64959175 58 - TSS region transcription start site region 51077
Tssr51078 5 64959177 to 64959196 19 - TSS region transcription start site region 51078
Tssr51079 5 64960032 to 64960069 37 - TSS region transcription start site region 51079
Tssr1490 5 64960809 to 64960829 20 - TSS region transcription start site region 1490
Tssr51080 5 64960836 to 64960851 15 - TSS region transcription start site region 51080
Tssr51081 5 64961031 to 64961045 14 - TSS region transcription start site region 51081
Cpgi15890 5 64961035 to 64961224 189 CpG island CpG island 15890
Tssr51082 5 64961049 to 64961064 15 - TSS region transcription start site region 51082
Tssr1491 5 64961329 to 64961337 8 - TSS region transcription start site region 1491
Tssr46437 5 64961432 to 64961439 7 + TSS region transcription start site region 46437
Cpgi15891 5 64969539 to 64970692 1153 CpG island CpG island 15891
Tssr46438 5 64970069 to 64970089 20 + TSS region transcription start site region 46438
Fam114a1 5 64970071 to 65041886 71815 + protein coding gene family with sequence similarity 114, member A1
Tssr46439 5 64970092 to 64970132 40 + TSS region transcription start site region 46439
Mir574 5 64970318 to 64970395 77 + miRNA gene microRNA 574
Gm43627 5 64972650 to 64974948 2298 + unclassified gene predicted gene 43627
Gm32374 5 64992391 to 65020711 28320 - lncRNA gene predicted gene, 32374
Tssr46440 5 65013382 to 65013387 5 + TSS region transcription start site region 46440
Tssr51083 5 65019117 to 65019120 3 - TSS region transcription start site region 51083
Tssr51084 5 65019143 to 65019150 7 - TSS region transcription start site region 51084
Tssr1492 5 65019171 to 65019178 7 - TSS region transcription start site region 1492
Tssr51085 5 65019194 to 65019207 13 - TSS region transcription start site region 51085
Tssr51086 5 65019260 to 65019276 16 - TSS region transcription start site region 51086
Tssr46441 5 65024328 to 65024352 24 + TSS region transcription start site region 46441
Tssr51087 5 65046134 to 65046143 9 - TSS region transcription start site region 51087
Tssr51088 5 65046877 to 65046881 4 - TSS region transcription start site region 51088
Tmem156 5 65058215 to 65092181 33966 - protein coding gene transmembrane protein 156
Tssr1493 5 65080961 to 65080965 4 + TSS region transcription start site region 1493
Tssr51089 5 65091598 to 65091616 18 - TSS region transcription start site region 51089
Tssr51090 5 65091619 to 65091637 18 - TSS region transcription start site region 51090
Cpgi15892 5 65107229 to 65108133 904 CpG island CpG island 15892
Klhl5 5 65107527 to 65168173 60646 + protein coding gene kelch-like 5
Tssr46442 5 65107551 to 65107582 31 + TSS region transcription start site region 46442
Tssr46443 5 65107595 to 65107613 18 + TSS region transcription start site region 46443
Tssr46444 5 65107613 to 65107616 3 + TSS region transcription start site region 46444
Tssr46445 5 65107618 to 65107655 37 + TSS region transcription start site region 46445
Tssr46446 5 65107658 to 65107665 7 + TSS region transcription start site region 46446
Tssr46447 5 65114943 to 65114950 7 + TSS region transcription start site region 46447
Tssr46448 5 65130999 to 65131010 11 + TSS region transcription start site region 46448
Tssr46449 5 65131109 to 65131158 49 + TSS region transcription start site region 46449
Tssr46450 5 65131184 to 65131214 30 + TSS region transcription start site region 46450
Tssr46451 5 65135214 to 65135225 11 + TSS region transcription start site region 46451
Gm25154 5 65136302 to 65136420 118 + rRNA gene predicted gene, 25154
Tssr46452 5 65154979 to 65154990 11 + TSS region transcription start site region 46452
Tssr46453 5 65155095 to 65155103 8 + TSS region transcription start site region 46453
Cpgi15893 5 65175664 to 65175930 266 CpG island CpG island 15893
Cpgi15894 5 65199455 to 65200049 594 CpG island CpG island 15894
Tssr46454 5 65199691 to 65199735 44 + TSS region transcription start site region 46454
Wdr19 5 65199696 to 65260415 60719 + protein coding gene WD repeat domain 19
Tssr1494 5 65247322 to 65247329 7 + TSS region transcription start site region 1494
Tssr46455 5 65250797 to 65250808 11 + TSS region transcription start site region 46455
Rfc1 5 65261850 to 65335670 73820 - protein coding gene replication factor C (activator 1) 1
Gm43628 5 65307808 to 65308994 1186 - unclassified gene predicted gene 43628
D5Ertd301e 5 65307829 to 65308068 239 DNA segment DNA segment, Chr 5, ERATO Doi 301, expressed
Tssr51091 5 65327641 to 65327644 3 - TSS region transcription start site region 51091
Tssr51092 5 65330139 to 65330148 9 - TSS region transcription start site region 51092
Cpgi15895 5 65335128 to 65335989 861 CpG island CpG island 15895
Tssr51093 5 65335581 to 65335592 11 - TSS region transcription start site region 51093
Tssr51094 5 65335597 to 65335679 82 - TSS region transcription start site region 51094
Tssr46456 5 65348328 to 65348346 18 + TSS region transcription start site region 46456
Tssr46457 5 65348386 to 65348406 20 + TSS region transcription start site region 46457
Klb 5 65348411 to 65384020 35609 + protein coding gene klotho beta
Tssr46458 5 65348475 to 65348502 27 + TSS region transcription start site region 46458
Cpgi15896 5 65379437 to 65379977 540 CpG island CpG island 15896
Tssr46459 5 65386455 to 65386457 2 + TSS region transcription start site region 46459
Rpl9 5 65388364 to 65391431 3067 - protein coding gene ribosomal protein L9
Cpgi15897 5 65390535 to 65391745 1210 CpG island CpG island 15897
Tssr51095 5 65391385 to 65391405 20 - TSS region transcription start site region 51095
Tssr51096 5 65391408 to 65391451 43 - TSS region transcription start site region 51096
Lias 5 65391497 to 65410423 18926 + protein coding gene lipoic acid synthetase
Tssr46460 5 65391523 to 65391565 42 + TSS region transcription start site region 46460
Tssr46461 5 65391577 to 65391588 11 + TSS region transcription start site region 46461
Tssr46462 5 65391593 to 65391594 1 + TSS region transcription start site region 46462
Tssr46463 5 65392642 to 65392647 5 + TSS region transcription start site region 46463
1110003F10Rik 5 65405751 to 65406517 766 + unclassified gene RIKEN cDNA 1110003F10 gene
Gm43311 5 65410651 to 65413027 2376 - unclassified gene predicted gene 43311
Ugdh 5 65413207 to 65435842 22635 - protein coding gene UDP-glucose dehydrogenase
Tssr51097 5 65419133 to 65419162 29 - TSS region transcription start site region 51097
Tssr51098 5 65421581 to 65421590 9 - TSS region transcription start site region 51098
Tssr51099 5 65422884 to 65422895 11 - TSS region transcription start site region 51099
Tssr51100 5 65422907 to 65422918 11 - TSS region transcription start site region 51100
D5Mit15 5 65422974 to 65423122 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 15
Tssr46464 5 65423587 to 65423621 34 + TSS region transcription start site region 46464
Tssr51101 5 65424328 to 65424339 11 - TSS region transcription start site region 51101
Gm43552 5 65427427 to 65492833 65406 - protein coding gene predicted gene 43552
Tssr51102 5 65427523 to 65427552 29 - TSS region transcription start site region 51102
Tssr51103 5 65428354 to 65428365 11 - TSS region transcription start site region 51103
Tssr51104 5 65428398 to 65428405 7 - TSS region transcription start site region 51104
Gm43289 5 65430106 to 65431580 1474 - unclassified gene predicted gene 43289
Tssr51105 5 65434885 to 65434889 4 - TSS region transcription start site region 51105
Cpgi15898 5 65435231 to 65436410 1179 CpG island CpG island 15898
Tssr51106 5 65435655 to 65435695 40 - TSS region transcription start site region 51106
Tssr51107 5 65435717 to 65435734 17 - TSS region transcription start site region 51107
Tssr51108 5 65435759 to 65435766 7 - TSS region transcription start site region 51108
Tssr51109 5 65435806 to 65435829 23 - TSS region transcription start site region 51109
Tssr51110 5 65435881 to 65435929 48 - TSS region transcription start site region 51110
Tssr51111 5 65436424 to 65436462 38 - TSS region transcription start site region 51111
Smim14 5 65446844 to 65537184 90340 - protein coding gene small integral membrane protein 14
Tssr51112 5 65453393 to 65453404 11 - TSS region transcription start site region 51112
Tssr51113 5 65454718 to 65454735 17 - TSS region transcription start site region 51113
Tssr51114 5 65454748 to 65454764 16 - TSS region transcription start site region 51114
Gm43290 5 65476505 to 65478061 1556 - unclassified gene predicted gene 43290
Tssr51115 5 65479816 to 65479844 28 - TSS region transcription start site region 51115
Tssr51116 5 65479871 to 65479881 10 - TSS region transcription start site region 51116
Tssr51117 5 65484038 to 65484076 38 - TSS region transcription start site region 51117
Tssr51118 5 65486089 to 65486096 7 - TSS region transcription start site region 51118
Cpgi15899 5 65492063 to 65493381 1318 CpG island CpG island 15899
Tssr51119 5 65492399 to 65492435 36 - TSS region transcription start site region 51119
Tssr51120 5 65492790 to 65492868 78 - TSS region transcription start site region 51120
Tssr51121 5 65492874 to 65492889 15 - TSS region transcription start site region 51121
Tssr51122 5 65492900 to 65492921 21 - TSS region transcription start site region 51122
Tssr51123 5 65492925 to 65492970 45 - TSS region transcription start site region 51123
Tssr51124 5 65492984 to 65492991 7 - TSS region transcription start site region 51124
4930589O11Rik 5 65493096 to 65494015 919 + unclassified gene RIKEN cDNA 4930589O11 gene
Tssr46465 5 65493436 to 65493468 32 + TSS region transcription start site region 46465
Gm42725 5 65531568 to 65535760 4192 - unclassified gene predicted gene 42725