Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:64804679-65053563

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38457 5 64802365 to 64804975 2610 - protein coding gene predicted gene, 38457
Klf3 5 64803523 to 64832903 29380 + protein coding gene Kruppel-like factor 3 (basic)
C230096K16Rik 5 64804014 to 64805735 1721 + protein coding gene RIKEN cDNA C230096K16 gene
Tssr51068 5 64805321 to 64805328 7 - TSS region transcription start site region 51068
Tssr51069 5 64806263 to 64806278 15 - TSS region transcription start site region 51069
Tssr46416 5 64806361 to 64806364 3 + TSS region transcription start site region 46416
Tssr46417 5 64810218 to 64810262 44 + TSS region transcription start site region 46417
Tssr46418 5 64812336 to 64812350 14 + TSS region transcription start site region 46418
Tssr46419 5 64812360 to 64812378 18 + TSS region transcription start site region 46419
Tssr51070 5 64812783 to 64812796 13 - TSS region transcription start site region 51070
Gm31684 5 64816838 to 64819750 2912 + lncRNA gene predicted gene, 31684
Tssr46420 5 64820955 to 64820959 4 + TSS region transcription start site region 46420
Tssr46421 5 64821915 to 64821930 15 + TSS region transcription start site region 46421
Tssr46422 5 64822078 to 64822108 30 + TSS region transcription start site region 46422
Tssr46423 5 64822117 to 64822173 56 + TSS region transcription start site region 46423
Tssr46424 5 64822220 to 64822246 26 + TSS region transcription start site region 46424
Tssr46425 5 64822984 to 64823010 26 + TSS region transcription start site region 46425
Cpgi15889 5 64826596 to 64826757 161 CpG island CpG island 15889
Tssr46426 5 64829879 to 64829900 21 + TSS region transcription start site region 46426
Tssr46427 5 64830018 to 64830045 27 + TSS region transcription start site region 46427
Tssr46428 5 64830464 to 64830468 4 + TSS region transcription start site region 46428
Tssr1489 5 64864766 to 64864788 22 - TSS region transcription start site region 1489
Tssr51071 5 64865454 to 64865504 50 - TSS region transcription start site region 51071
Tssr51072 5 64865545 to 64865560 15 - TSS region transcription start site region 51072
Gm31889 5 64879545 to 64888266 8721 + lncRNA gene predicted gene, 31889
Gm21011 5 64896930 to 64898539 1609 - pseudogene predicted gene, 21011
Tssr51073 5 64899019 to 64899032 13 - TSS region transcription start site region 51073
Tssr46429 5 64899055 to 64899066 11 + TSS region transcription start site region 46429
Tssr46430 5 64899113 to 64899139 26 + TSS region transcription start site region 46430
Tssr46431 5 64906281 to 64906310 29 + TSS region transcription start site region 46431
Tssr46432 5 64909285 to 64909332 47 + TSS region transcription start site region 46432
Tssr46433 5 64910222 to 64910233 11 + TSS region transcription start site region 46433
Tssr46434 5 64910286 to 64910311 25 + TSS region transcription start site region 46434
Tssr46435 5 64917699 to 64917702 3 + TSS region transcription start site region 46435
Tssr46436 5 64924185 to 64924199 14 + TSS region transcription start site region 46436
Tlr1 5 64924679 to 64933563 8884 - protein coding gene toll-like receptor 1
Tssr51074 5 64932891 to 64932904 13 - TSS region transcription start site region 51074
Tssr51075 5 64932911 to 64932952 41 - TSS region transcription start site region 51075
Tssr51076 5 64933550 to 64933606 56 - TSS region transcription start site region 51076
Tlr6 5 64952031 to 64960097 8066 - protein coding gene toll-like receptor 6
Tssr51077 5 64959117 to 64959175 58 - TSS region transcription start site region 51077
Tssr51078 5 64959177 to 64959196 19 - TSS region transcription start site region 51078
Tssr51079 5 64960032 to 64960069 37 - TSS region transcription start site region 51079
Tssr1490 5 64960809 to 64960829 20 - TSS region transcription start site region 1490
Tssr51080 5 64960836 to 64960851 15 - TSS region transcription start site region 51080
Tssr51081 5 64961031 to 64961045 14 - TSS region transcription start site region 51081
Cpgi15890 5 64961035 to 64961224 189 CpG island CpG island 15890
Tssr51082 5 64961049 to 64961064 15 - TSS region transcription start site region 51082
Tssr1491 5 64961329 to 64961337 8 - TSS region transcription start site region 1491
Tssr46437 5 64961432 to 64961439 7 + TSS region transcription start site region 46437
Cpgi15891 5 64969539 to 64970692 1153 CpG island CpG island 15891
Tssr46438 5 64970069 to 64970089 20 + TSS region transcription start site region 46438
Fam114a1 5 64970071 to 65041886 71815 + protein coding gene family with sequence similarity 114, member A1
Tssr46439 5 64970092 to 64970132 40 + TSS region transcription start site region 46439
Mir574 5 64970318 to 64970395 77 + miRNA gene microRNA 574
Gm43627 5 64972650 to 64974948 2298 + unclassified gene predicted gene 43627
Gm32374 5 64992391 to 65020711 28320 - lncRNA gene predicted gene, 32374
Tssr46440 5 65013382 to 65013387 5 + TSS region transcription start site region 46440
Tssr51083 5 65019117 to 65019120 3 - TSS region transcription start site region 51083
Tssr51084 5 65019143 to 65019150 7 - TSS region transcription start site region 51084
Tssr1492 5 65019171 to 65019178 7 - TSS region transcription start site region 1492
Tssr51085 5 65019194 to 65019207 13 - TSS region transcription start site region 51085
Tssr51086 5 65019260 to 65019276 16 - TSS region transcription start site region 51086
Tssr46441 5 65024328 to 65024352 24 + TSS region transcription start site region 46441
Tssr51087 5 65046134 to 65046143 9 - TSS region transcription start site region 51087
Tssr51088 5 65046877 to 65046881 4 - TSS region transcription start site region 51088